Candida Genome Database
Names
More detailed information about this field from each metasource.
Candida Genome Database
metasource: Fairsharing.org
version: FAIRsharing.org: CGD; Candida Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.j7j53; Last edited: April 26, 2021, 8:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: re3data.org
version: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
CGD
metasource: Fairsharing.org
version: FAIRsharing.org: CGD; Candida Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.j7j53; Last edited: April 26, 2021, 8:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: re3data.org
version: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
CGD - Candida Genome Database
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Candida genome database CGD
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:20.371056
cgd
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:20.371056
Names
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Candida Genome Database
metasource: Fairsharing.orgversion: FAIRsharing.org: CGD; Candida Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.j7j53; Last edited: April 26, 2021, 8:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: re3data.org
version: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
CGD
metasource: Fairsharing.orgversion: FAIRsharing.org: CGD; Candida Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.j7j53; Last edited: April 26, 2021, 8:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: re3data.org
version: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
CGD - Candida Genome Database
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Candida genome database CGD
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:20.371056
cgd
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:20.371056
Other names: CGD, CGD - Candida Genome Database, Candida genome database CGD, cgd
Names
More detailed information about this field from each metasource.
Candida Genome Database
metasource: Fairsharing.orgversion: FAIRsharing.org: CGD; Candida Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.j7j53; Last edited: April 26, 2021, 8:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: re3data.org
version: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
CGD
metasource: Fairsharing.orgversion: FAIRsharing.org: CGD; Candida Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.j7j53; Last edited: April 26, 2021, 8:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: re3data.org
version: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
CGD - Candida Genome Database
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Candida genome database CGD
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:20.371056
cgd
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:20.371056
The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products.
Description
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The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products.
metasource: Fairsharing.orgversion: FAIRsharing.org: CGD; Candida Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.j7j53; Last edited: April 26, 2021, 8:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
The Candida Genome Database (CGD) provides free online access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans and related species, C. glabrata, C. parapsilosis and C. dublinensis. CGD collects and organizes data from the biological literature concerning these species, and provides curated gene product descriptions, Gene Ontology annotation, mutant phenotypes, and gene-specific reference lists. In addition, CGD gives access to genome sequences from several other Candida-related species. CGD also contains additional online resources for the Candida research community, including a gene name registry, laboratory contact information, research job opportunities, and research community news. The Candida Genome Database (CGD) project is funded by the National Institute of Dental & Craniofacial Research at the US National Institutes of Health. The CGD is in the Department of Genetics at the School of Medicine, Stanford University. .
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Candida Genome Database, a resource for genomic sequence data and gene and protein information for Candida albicans and related species. CGD is based on the Saccharomyces Genome Database. The Candida Genome Database (CGD) provides online access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans and related species. C. albicans is the best studied of the human fungal pathogens. It is a common commensal organism of healthy individuals, but can cause debilitating mucosal infections and life-threatening systemic infections, especially in immunocompromised patients. C. albicans also serves as a model organism for the study of other fungal pathogens.
metasource: re3data.orgversion: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
Provides online access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. Two tools have been added to the DB. The Biochemical Pathways tool provides visualization of metabolic pathways and analysis tools that facilitate interpretation of experimental data, including results of large-scale experiments, in the context of Candida metabolism.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:20.371056
Webpage:
http://www.candidagenome.org/Webpage
More detailed information about this field from each metasource.
http://www.candidagenome.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: CGD; Candida Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.j7j53; Last edited: April 26, 2021, 8:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:20.371056
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other
metasource: re3data.orgversion: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
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http://www.candidagenome.org/cgi-bin/reference/refsWithData.pl
metasource: re3data.orgversion: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
Publications:
Publications
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The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata
PMID: 22064862
metasource: Fairsharing.org
version: FAIRsharing.org: CGD; Candida Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.j7j53; Last edited: April 26, 2021, 8:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:20.371056
The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information
PMID: 15608216
metasource: Fairsharing.org
version: FAIRsharing.org: CGD; Candida Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.j7j53; Last edited: April 26, 2021, 8:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
New tools at the Candida Genome Database: biochemical pathways and full-text literature search
PMID: 19808938
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:20.371056
http://dx.doi.org/10.1093/nar/gkt1046
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata
PMID: 22064862
metasource: Fairsharing.org
version: FAIRsharing.org: CGD; Candida Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.j7j53; Last edited: April 26, 2021, 8:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:20.371056
The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information
PMID: 15608216
metasource: Fairsharing.org
version: FAIRsharing.org: CGD; Candida Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.j7j53; Last edited: April 26, 2021, 8:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
New tools at the Candida Genome Database: biochemical pathways and full-text literature search
PMID: 19808938
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:20.371056
http://dx.doi.org/10.1093/nar/gkt1046
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata
PubMed citations: 130.
130 articles citing: The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata
Fun30 and Rtt109 Mediate Epigenetic Regulation of the DNA Damage Response Pathway in C. albicans. PMID:35736042
Genome-wide analysis of PTR transporters in Candida species and their functional characterization in Candida auris. PMID:35648145
Estrogen promotes innate immune evasion of Candida albicans through inactivation of the alternative complement system. PMID:34986357
CO2 enhances the formation, nutrient scavenging and drug resistance properties of C. albicans biofilms. PMID:34385462
Survival Strategies of Pathogenic Candida Species in Human Blood Show Independent and Specific Adaptations. PMID:33024045
Fun(gi)omics: Advanced and Diverse Technologies to Explore Emerging Fungal Pathogens and Define Mechanisms of Antifungal Resistance. PMID:33024032
Advances in Molecular Tools and In Vivo Models for the Study of Human Fungal Pathogenesis. PMID:32466582
Identifying Candida albicans Gene Networks Involved in Pathogenicity. PMID:32391057
Phosphate in Virulence of Candida albicans and Candida glabrata. PMID:32224872
Transcriptional responses of Candida glabrata biofilm cells to fluconazole are modulated by the carbon source. PMID:31993211
Methidathion Poisoning. PMID:31723659
Global Secretome Characterization of the Pathogenic Yeast Candida glabrata. PMID:31621333
Remasking of Candida albicans β-Glucan in Response to Environmental pH Is Regulated by Quorum Sensing. PMID:31615961
Screening of Candida albicans GRACE library revealed a unique pattern of biofilm formation under repression of the essential gene ILS1. PMID:31235750
Coordinated host-pathogen transcriptional dynamics revealed using sorted subpopulations and single macrophages infected with Candida albicans. PMID:30962448
AYbRAH: a curated ortholog database for yeasts and fungi spanning 600 million years of evolution. PMID:30893420
Hemizygosity Enables a Mutational Transition Governing Fungal Virulence and Commensalism. PMID:30824263
Repurposing Pilocarpine Hydrochloride for Treatment of Candida albicans Infections. PMID:30674648
Functional Mapping of Transcription Factor Grf10 That Regulates Adenine-Responsive and Filamentation Genes in Candida albicans. PMID:30355670
Candida albicans Dispersed Cells Are Developmentally Distinct from Biofilm and Planktonic Cells. PMID:30131358
A phenotypic small-molecule screen identifies halogenated salicylanilides as inhibitors of fungal morphogenesis, biofilm formation and host cell invasion. PMID:30068935
Restriction digest screening facilitates efficient detection of site-directed mutations introduced by CRISPR in C. albicans UME6. PMID:29892505
Using the Candida Genome Database. PMID:29761455
Biphasic zinc compartmentalisation in a human fungal pathogen. PMID:29727465
Redox Regulation, Rather than Stress-Induced Phosphorylation, of a Hog1 Mitogen-Activated Protein Kinase Modulates Its Nitrosative-Stress-Specific Outputs. PMID:29588408
Put3 Positively Regulates Proline Utilization in Candida albicans. PMID:29242833
pH-Dependant Antifungal Activity of Valproic Acid against the Human Fungal Pathogen Candida albicans. PMID:29062309
The Candida albicans transcription factor Cas5 couples stress responses, drug resistance and cell cycle regulation. PMID:28894103
The Transcriptional Response of Candida albicans to Weak Organic Acids, Carbon Source, and MIG1 Inactivation Unveils a Role for HGT16 in Mediating the Fungistatic Effect of Acetic Acid. PMID:28877970
Eukaryotic transporters for hydroxyderivatives of benzoic acid. PMID:28827635
A Simple Light Isotope Metabolic Labeling (SLIM-labeling) Strategy: A Powerful Tool to Address the Dynamics of Proteome Variations In Vivo. PMID:28821603
Grf10 and Bas1 Regulate Transcription of Adenylate and One-Carbon Biosynthesis Genes and Affect Virulence in the Human Fungal Pathogen Candida albicans. PMID:28776040
Transcriptional Profiling of C. albicans in a Two Species Biofilm with Rothia dentocariosa. PMID:28752078
The CCAAT-Binding Complex Controls Respiratory Gene Expression and Iron Homeostasis in Candida Glabrata. PMID:28615656
Sfp1 and Rtg3 reciprocally modulate carbon source-conditional stress adaptation in the pathogenic yeast Candida albicans. PMID:28574606
Phosphate is the third nutrient monitored by TOR in Candida albicans and provides a target for fungal-specific indirect TOR inhibition. PMID:28566496
A tool named Iris for versatile high-throughput phenotyping in microorganisms. PMID:28211844
Encapsulation of Antifungals in Micelles Protects Candida albicans during Gall-Bladder Infection. PMID:28203228
Untargeted metabolomics of colonic digests reveals kynurenine pathway metabolites, dityrosine and 3-dehydroxycarnitine as red versus white meat discriminating metabolites. PMID:28195169
Online Databases for Taxonomy and Identification of Pathogenic Fungi and Proposal for a Cloud-Based Dynamic Data Network Platform. PMID:28179406
Protein Bioinformatics Databases and Resources. PMID:28150231
Evolution of the Sterol Biosynthetic Pathway of Pythium insidiosum and Related Oomycetes Contributes to Antifungal Drug Resistance. PMID:28115356
Genome-Wide Screen for Haploinsufficient Cell Size Genes in the Opportunistic Yeast Candida albicans. PMID:28040776
Characterization of the Candida albicans Amino Acid Permease Family: Gap2 Is the Only General Amino Acid Permease and Gap4 Is an S-Adenosylmethionine (SAM) Transporter Required for SAM-Induced Morphogenesis. PMID:28028545
Lactate signalling regulates fungal β-glucan masking and immune evasion. PMID:27941860
Robust Extracellular pH Modulation by Candida albicans during Growth in Carboxylic Acids. PMID:27935835
Zinc Cluster Transcription Factors Alter Virulence in Candida albicans. PMID:27932543
Investigating Conservation of the Cell-Cycle-Regulated Transcriptional Program in the Fungal Pathogen, Cryptococcus neoformans. PMID:27918582
Candida albicans Is Resistant to Polyglutamine Aggregation and Toxicity. PMID:27807047
Integrating Candida albicans metabolism with biofilm heterogeneity by transcriptome mapping. PMID:27765942
A Multistate Toggle Switch Defines Fungal Cell Fates and Is Regulated by Synergistic Genetic Cues. PMID:27711197
Biotin Auxotrophy and Biotin Enhanced Germ Tube Formation in Candida albicans. PMID:27681931
Identification of Non-Coding RNAs in the Candida parapsilosis Species Group. PMID:27658249
Transcriptional rewiring over evolutionary timescales changes quantitative and qualitative properties of gene expression. PMID:27614020
Identification of Genes in Candida glabrata Conferring Altered Responses to Caspofungin, a Cell Wall Synthesis Inhibitor. PMID:27449515
Sir2 regulates stability of repetitive domains differentially in the human fungal pathogen Candida albicans. PMID:27369382
The roles of zinc and copper sensing in fungal pathogenesis. PMID:27327380
Selection for reduced translation costs at the intronic 5' end in fungi. PMID:27260512
A Network of Paralogous Stress Response Transcription Factors in the Human Pathogen Candida glabrata. PMID:27242683
Hsf1 and Hsp90 orchestrate temperature-dependent global transcriptional remodelling and chromatin architecture in Candida albicans. PMID:27226156
The Metacaspase (Mca1p) Restricts O-glycosylation During Farnesol-induced Apoptosis in Candida albicans. PMID:27125826
Evaluation of capacity to detect ability to form biofilm in Candida parapsilosis sensu stricto strains by MALDI-TOF MS. PMID:27068413
Partial Decay of Thiamine Signal Transduction Pathway Alters Growth Properties of Candida glabrata. PMID:27015653
Candida albicans Agglutinin-Like Sequence (Als) Family Vignettes: A Review of Als Protein Structure and Function. PMID:27014205
Hgc1-Cdc28-how much does a single protein kinase do in the regulation of hyphal development in Candida albicans? PMID:26920877
A Systems Biology Approach to the Coordination of Defensive and Offensive Molecular Mechanisms in the Innate and Adaptive Host-Pathogen Interaction Networks. PMID:26881892
Phylogenetic and Transcripts Profiling of Glucose Sensing Related Genes in Candida glabrata. PMID:26855740
Identification and Characterization of Wor4, a New Transcriptional Regulator of White-Opaque Switching. PMID:26772749
BioGRID: A Resource for Studying Biological Interactions in Yeast. PMID:26729913
Candida albicans Shaving to Profile Human Serum Proteins on Hyphal Surface. PMID:26696967
Transcriptomic analysis of cobalt stress in the marine yeast Debaryomyces hansenii. PMID:26546454
Acquired Flucytosine Resistance during Combination Therapy with Caspofungin and Flucytosine for Candida glabrata Cystitis. PMID:26525799
How to Use the Candida Genome Database. PMID:26519061
New strategic insights into managing fungal biofilms. PMID:26500623
The transcriptome of Candida albicans mitochondria and the evolution of organellar transcription units in yeasts. PMID:26487099
Adaptations of the Secretome of Candida albicans in Response to Host-Related Environmental Conditions. PMID:26453650
Using Gene Essentiality and Synthetic Lethality Information to Correct Yeast and CHO Cell Genome-Scale Models. PMID:26426067
Integrated inference and evaluation of host-fungi interaction networks. PMID:26300851
Nucleotide sequence composition adjacent to intronic splice sites improves splicing efficiency via its effect on pre-mRNA local folding in fungi. PMID:26246046
Candida glabrata: new tools and technologies-expanding the toolkit. PMID:26205243
Structural Hot Spots Determine Functional Diversity of the Candida glabrata Epithelial Adhesin Family. PMID:26105055
Contribution of Fdh3 and Glr1 to Glutathione Redox State, Stress Adaptation and Virulence in Candida albicans. PMID:26039593
The Candida albicans Exocyst Subunit Sec6 Contributes to Cell Wall Integrity and Is a Determinant of Hyphal Branching. PMID:26002719
A Candida albicans CRISPR system permits genetic engineering of essential genes and gene families. PMID:25977940
Plasma Membrane Proteolipid 3 Protein Modulates Amphotericin B Resistance through Sphingolipid Biosynthetic Pathway. PMID:25965669
A single nucleotide polymorphism uncovers a novel function for the transcription factor Ace2 during Candida albicans hyphal development. PMID:25875512
Biochemical functional predictions for protein structures of unknown or uncertain function. PMID:25848497
The elicitin-like glycoprotein, ELI025, is secreted by the pathogenic oomycete Pythium insidiosum and evades host antibody responses. PMID:25793767
An expanded regulatory network temporally controls Candida albicans biofilm formation. PMID:25784162
Analysis of the Candida albicans Phosphoproteome. PMID:25750214
Computational prediction of molecular pathogen-host interactions based on dual transcriptome data. PMID:25705211
The evolution of drug resistance in clinical isolates of Candida albicans. PMID:25646566
Signaling domains of mucin Msb2 in Candida albicans. PMID:25636320
The transcriptional stress response of Candida albicans to weak organic acids. PMID:25636313
Defining the transcriptomic landscape of Candida glabrata by RNA-Seq. PMID:25586221
Microevolution of Candida albicans in macrophages restores filamentation in a nonfilamentous mutant. PMID:25474009
The BioGRID interaction database: 2015 update. PMID:25428363
The metacaspase (Mca1p) has a dual role in farnesol-induced apoptosis in Candida albicans. PMID:25348831
FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species. PMID:25294921
Comparative phenotypic analysis of the major fungal pathogens Candida parapsilosis and Candida albicans. PMID:25233198
Metabolism in fungal pathogenesis. PMID:25190251
Novel entries in a fungal biofilm matrix encyclopedia. PMID:25096878
Conservation and divergence of transcriptional coregulations between box C/D snoRNA and ribosomal protein genes in Ascomycota. PMID:25002674
New Clox Systems for rapid and efficient gene disruption in Candida albicans. PMID:24940603
A novel antifungal is active against Candida albicans biofilms and inhibits mutagenic acetaldehyde production in vitro. PMID:24867320
Conservation of PHO pathway in ascomycetes and the role of Pho84. PMID:24845516
Extensive and coordinated control of allele-specific expression by both transcription and translation in Candida albicans. PMID:24732588
Modeling the transcriptional regulatory network that controls the early hypoxic response in Candida albicans. PMID:24681685
Regulatory networks controlling nitrogen sensing and uptake in Candida albicans. PMID:24651113
Distinct roles of Candida albicans-specific genes in host-pathogen interactions. PMID:24610660
Yeast endocytic adaptor AP-2 binds the stress sensor Mid2 and functions in polarized cell responses. PMID:24460703
Spaceflight enhances cell aggregation and random budding in Candida albicans. PMID:24324620
PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome. PMID:24275491
The Candida Genome Database: the new homology information page highlights protein similarity and phylogeny. PMID:24185697
Calmodulin binding to Dfi1p promotes invasiveness of Candida albicans. PMID:24155896
Characterization of genetic determinants that modulate Candida albicans filamentation in the presence of bacteria. PMID:23951271
Interspecies protein-protein interaction network construction for characterization of host-pathogen interactions: a Candida albicans-zebrafish interaction study. PMID:23947337
A temperature-responsive network links cell shape and virulence traits in a primary fungal pathogen. PMID:23935449
The APSES transcription factor Efg1 is a global regulator that controls morphogenesis and biofilm formation in Candida parapsilosis. PMID:23895281
Passage through the mammalian gut triggers a phenotypic switch that promotes Candida albicans commensalism. PMID:23892606
Unraveling the molecular basis of temperature-dependent genetic regulation in Penicillium marneffei. PMID:23851338
GoSynthetic database tool to analyse natural and engineered molecular processes. PMID:23813641
Candida albicans: A Model Organism for Studying Fungal Pathogens. PMID:23762753
FSRD: fungal stress response database. PMID:23757396
Antifungal activity of fused Mannich ketones triggers an oxidative stress response and is Cap1-dependent in Candida albicans. PMID:23646117
Mitochondrial two-component signaling systems in Candida albicans. PMID:23584995
Comparative genome analysis and gene finding in Candida species using CGOB. PMID:23486613
Candida albicans pathogenicity mechanisms. PMID:23302789
The BioGRID interaction database: 2013 update. PMID:23203989
Improved gene ontology annotation for biofilm formation, filamentous growth, and phenotypic switching in Candida albicans. PMID:23143685 -
The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information
PubMed citations: 57.
57 articles citing: The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information
Insight Into the Properties and Immunoregulatory Effect of Extracellular Vesicles Produced by Candida glabrata, Candida parapsilosis, and Candida tropicalis Biofilms. PMID:35734578
GIP: an open-source computational pipeline for mapping genomic instability from protists to cancer cells. PMID:34928370
Characteristics of Extracellular Vesicles Released by the Pathogenic Yeast-Like Fungi Candida glabrata, Candida parapsilosis and Candida tropicalis. PMID:32708393
Protein markers for Candida albicans EVs include claudin-like Sur7 family proteins. PMID:32363014
Moonlighting proteins are variably exposed at the cell surfaces of Candida glabrata, Candida parapsilosis and Candida tropicalis under certain growth conditions. PMID:31269895
Atomic Force Microscopy Demonstrates that Candida glabrata Uses Three Epa Proteins To Mediate Adhesion to Abiotic Surfaces. PMID:31043520
Investigating Common Pathogenic Mechanisms between Homo sapiens and Different Strains of Candida albicans for Drug Design: Systems Biology Approach via Two-Sided NGS Data Identification. PMID:30769958
Molecular and Physiological Study of Candida albicans by Quantitative Proteome Analysis. PMID:30231513
Restriction digest screening facilitates efficient detection of site-directed mutations introduced by CRISPR in C. albicans UME6. PMID:29892505
Chemogenomic Profiling of the Fungal Pathogen Candida albicans. PMID:29203491
Haplotyping a Non-meiotic Diploid Fungal Pathogen Using Induced Aneuploidies and SNP/CGH Microarray Analysis. PMID:28138844
The Candida Genome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data. PMID:27738138
ZCF32, a fungus specific Zn(II)2 Cys6 transcription factor, is a repressor of the biofilm development in the human pathogen Candida albicans. PMID:27498700
Examination of the pathogenic potential of Candida albicans filamentous cells in an animal model of haematogenously disseminated candidiasis. PMID:26851404
Integrated inference and evaluation of host-fungi interaction networks. PMID:26300851
YMAP: a pipeline for visualization of copy number variation and loss of heterozygosity in eukaryotic pathogens. PMID:25505934
Characterization of a putative spindle assembly checkpoint kinase Mps1, suggests its involvement in cell division, morphogenesis and oxidative stress tolerance in Candida albicans. PMID:25025778
Essential functional modules for pathogenic and defensive mechanisms in Candida albicans infections. PMID:24757665
Morphogenesis-regulated localization of protein kinase A to genomic sites in Candida albicans. PMID:24289325
The Candida Genome Database: the new homology information page highlights protein similarity and phylogeny. PMID:24185697
Curcumin targets cell wall integrity via calcineurin-mediated signaling in Candida albicans. PMID:24145527
Dynamic transcript profiling of Candida albicans infection in zebrafish: a pathogen-host interaction study. PMID:24019870
Mitochondrial two-component signaling systems in Candida albicans. PMID:23584995
Improved gene ontology annotation for biofilm formation, filamentous growth, and phenotypic switching in Candida albicans. PMID:23143685
Insight into the antiadhesive effect of yeast wall protein 1 of Candida albicans. PMID:22505336
Network evolution: rewiring and signatures of conservation in signaling. PMID:22438796
Tetrahymena Genome Database Wiki: a community-maintained model organism database. PMID:22434841
Candida albicans possesses Sap7 as a pepstatin A-insensitive secreted aspartic protease. PMID:22384266
The Comprehensive Phytopathogen Genomics Resource: a web-based resource for data-mining plant pathogen genomes. PMID:22120664
The reconstruction of condition-specific transcriptional modules provides new insights in the evolution of yeast AP-1 proteins. PMID:21695268
FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens. PMID:21496229
Sch9 kinase integrates hypoxia and CO2 sensing to suppress hyphal morphogenesis in Candida albicans. PMID:21335533
Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions. PMID:20627862
The evolutionary rate variation among genes of HOG-signaling pathway in yeast genomes. PMID:20618989
Impact of genetic background on allele selection in a highly mutable Candida albicans gene, PNG2. PMID:20231904
Proteomic analysis of cytoplasmic and surface proteins from yeast cells, hyphae, and biofilms of Candida albicans. PMID:19322777
Kex2 protease converts the endoplasmic reticulum alpha1,2-mannosidase of Candida albicans into a soluble cytosolic form. PMID:19047746
Candida albicans cell wall proteins. PMID:18772287
Immunological dominance of Trypanosoma cruzi tandem repeat proteins. PMID:18625739
Microtubule motor protein Kar3 is required for normal mitotic division and morphogenesis in Candida albicans. PMID:18586948
Onto-CC: a web server for identifying Gene Ontology conceptual clusters. PMID:18544607
Candida albicans Tup1 is involved in farnesol-mediated inhibition of filamentous-growth induction. PMID:18424510
Functional mapping of the Candida albicans Efg1 regulator. PMID:18375615
Tetracycline alters drug susceptibility in Candida albicans and other pathogenic fungi. PMID:18310042
UME6, a novel filament-specific regulator of Candida albicans hyphal extension and virulence. PMID:18216277
CandidaDB: a multi-genome database for Candida species and related Saccharomycotina. PMID:18039716
Responses of pathogenic and nonpathogenic yeast species to steroids reveal the functioning and evolution of multidrug resistance transcriptional networks. PMID:17993571
Role of actin cytoskeletal dynamics in activation of the cyclic AMP pathway and HWP1 gene expression in Candida albicans. PMID:17715368
Protein arginine methylation in Candida albicans: role in nuclear transport. PMID:17483287
SemCat: semantically categorized entities for genomics. PMID:17238442
Sequence resources at the Candida Genome Database. PMID:17090582
A glucose sensor in Candida albicans. PMID:17030998
A small subpopulation of blastospores in candida albicans biofilms exhibit resistance to amphotericin B associated with differential regulation of ergosterol and beta-1,6-glucan pathway genes. PMID:16966398
Identification of a copper-inducible promoter for use in ectopic expression in the fungal pathogen Histoplasma capsulatum. PMID:16757741
Overexpression of Candida albicans CDR1, CDR2, or MDR1 does not produce significant changes in echinocandin susceptibility. PMID:16569823
A human-curated annotation of the Candida albicans genome. PMID:16103911
Induction of the Candida albicans filamentous growth program by relief of transcriptional repression: a genome-wide analysis. PMID:15814840 -
New tools at the Candida Genome Database: biochemical pathways and full-text literature search
PubMed citations: 33.
33 articles citing: New tools at the Candida Genome Database: biochemical pathways and full-text literature search
The δ subunit of F1Fo-ATP synthase is required for pathogenicity of Candida albicans. PMID:34654833
Inhibition of Respiration of Candida albicans by Small Molecules Increases Phagocytosis Efficacy by Macrophages. PMID:32295866
The antifungal plant defensin HsAFP1 induces autophagy, vacuolar dysfunction and cell cycle impairment in yeast. PMID:32145284
Honokiol induces superoxide production by targeting mitochondrial respiratory chain complex I in Candida albicans. PMID:28854218
Stimulation of superoxide production increases fungicidal action of miconazole against Candida albicans biofilms. PMID:27272719
Budding off: bringing functional genomics to Candida albicans. PMID:26424829
Dynamic transcript profiling of Candida albicans infection in zebrafish: a pathogen-host interaction study. PMID:24019870
Candida albicans: A Model Organism for Studying Fungal Pathogens. PMID:23762753
Candida guilliermondii: biotechnological applications, perspectives for biological control, emerging clinical importance and recent advances in genetics. PMID:23616192
Genetic and genomic architecture of the evolution of resistance to antifungal drug combinations. PMID:23593013
Factors supporting cysteine tolerance and sulfite production in Candida albicans. PMID:23417561
Probiotic interference of Lactobacillus rhamnosus GR-1 and Lactobacillus reuteri RC-14 with the opportunistic fungal pathogen Candida albicans. PMID:22811591
BRG1 and NRG1 form a novel feedback circuit regulating Candida albicans hypha formation and virulence. PMID:22757963
The functions of Mediator in Candida albicans support a role in shaping species-specific gene expression. PMID:22496666
The novel Candida albicans transporter Dur31 Is a multi-stage pathogenicity factor. PMID:22438810
An Interspecies Regulatory Network Inferred from Simultaneous RNA-seq of Candida albicans Invading Innate Immune Cells. PMID:22416242
Hosting infection: experimental models to assay Candida virulence. PMID:22235206
Identification of cell cycle-regulated, putative hyphal genes in Candida albicans. PMID:22174285
CharProtDB: a database of experimentally characterized protein annotations. PMID:22140108
The UniProt-GO Annotation database in 2011. PMID:22123736
FungiDB: an integrated functional genomics database for fungi. PMID:22064857
Using the Saccharomyces Genome Database (SGD) for analysis of genomic information. PMID:21901739
An iron homeostasis regulatory circuit with reciprocal roles in Candida albicans commensalism and pathogenesis. PMID:21843869
Regulation of white and opaque cell-type formation in Candida albicans by Rtt109 and Hst3. PMID:21749487
The Candida albicans-specific gene EED1 encodes a key regulator of hyphal extension. PMID:21512583
Molecular and proteomic analyses highlight the importance of ubiquitination for the stress resistance, metabolic adaptation, morphogenetic regulation and virulence of Candida albicans. PMID:21269335
Gene annotation and drug target discovery in Candida albicans with a tagged transposon mutant collection. PMID:20949076
Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq. PMID:20810668
The transcriptomes of two heritable cell types illuminate the circuit governing their differentiation. PMID:20808890
Experimental annotation of the human pathogen Candida albicans coding and noncoding transcribed regions using high-resolution tiling arrays. PMID:20618945
Systematic screens of a Candida albicans homozygous deletion library decouple morphogenetic switching and pathogenicity. PMID:20543849
Melanin externalization in Candida albicans depends on cell wall chitin structures. PMID:20543065
Real-time PCR expression profiling of genes encoding potential virulence factors in Candida albicans biofilms: identification of model-dependent and -independent gene expression. PMID:20398368 - http://dx.doi.org/10.1093/nar/gkt1046
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More detailed information about this field from each metasource.
curated information
metasource: Fairsharing.org
version: FAIRsharing.org: CGD; Candida Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.j7j53; Last edited: April 26, 2021, 8:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
dna sequence data
metasource: Fairsharing.org
version: FAIRsharing.org: CGD; Candida Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.j7j53; Last edited: April 26, 2021, 8:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: CGD; Candida Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.j7j53; Last edited: April 26, 2021, 8:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: re3data.org
version: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
nucleotide
metasource: Fairsharing.org
version: FAIRsharing.org: CGD; Candida Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.j7j53; Last edited: April 26, 2021, 8:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
pathogen
metasource: Fairsharing.org
version: FAIRsharing.org: CGD; Candida Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.j7j53; Last edited: April 26, 2021, 8:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
fungal genome databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
c. albicans
metasource: re3data.org
version: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
c. dubliniensis
metasource: re3data.org
version: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
c. glabrata
metasource: re3data.org
version: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
c. parapsilosis
metasource: re3data.org
version: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
sequence analysis
metasource: re3data.org
version: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
yeast
metasource: re3data.org
version: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
endocrinology and metabolism
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:20.371056
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:20.371056
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:20.371056
experimental design and studies
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:20.371056
Tags
More detailed information about this field from each metasource.
curated information
metasource: Fairsharing.orgversion: FAIRsharing.org: CGD; Candida Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.j7j53; Last edited: April 26, 2021, 8:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
dna sequence data
metasource: Fairsharing.orgversion: FAIRsharing.org: CGD; Candida Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.j7j53; Last edited: April 26, 2021, 8:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: CGD; Candida Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.j7j53; Last edited: April 26, 2021, 8:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: re3data.org
version: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
nucleotide
metasource: Fairsharing.orgversion: FAIRsharing.org: CGD; Candida Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.j7j53; Last edited: April 26, 2021, 8:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
pathogen
metasource: Fairsharing.orgversion: FAIRsharing.org: CGD; Candida Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.j7j53; Last edited: April 26, 2021, 8:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
fungal genome databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
c. albicans
metasource: re3data.orgversion: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
c. dubliniensis
metasource: re3data.orgversion: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
c. glabrata
metasource: re3data.orgversion: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
c. parapsilosis
metasource: re3data.orgversion: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
sequence analysis
metasource: re3data.orgversion: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
yeast
metasource: re3data.orgversion: re3data.org: Candida Genome Database; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36312 last accessed: 2022-11-04
endocrinology and metabolism
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:20.371056
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:20.371056
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:20.371056
experimental design and studies
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:20.371056
dna sequences genome nucleotide pathogen genomics fungal genome c. albicans c. dubliniensis c. glabrata c. parapsilosis sequence analysis yeast endocrinology and metabolism model organisms molecular interactions, pathways and networks experimental design and studies
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