Tag: phylogeny


Found 32 sources
Source Match ReputationScore*

ExPASy Bioinformatics Resource Portal


Swiss Institute of Bioinformatics (SIB) coordinates research and education in bioinformatics throughout Switzerland and provides bioinformatics services to the national and international research community. ExPASy gives access to numerous repositorie ...
100%

Insertion Sequence Finder


This database provides a list of insertion sequences (IS) isolated from bacteria and archae. It is organized into individual files containing their general features (name, size, origin, family.....) as well as their DNA and potential protein sequence ...
98%

Database of Orthologous Groups


OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes. Orthology refers to the last common ancestor of the species under consideration, and thus OrthoDB explicitly delineates orthologs at each radiation along the species phylogeny ...
84%

Ribosomal Database Project (RDP-II)


The Ribosomal Database Project - II (RDP-II)(1) provides data, tools and services related to ribosomal RNA sequences to the research community. Through its website (http://rdp.cme.msu.edu), RDP-II offers aligned and annotated rRNA sequence data, anal ...
84%

Dfam


The Dfam database is a open collection of DNA Transposable Element sequence alignments, hidden Markov Models (HMMs), consensus sequences, and genome annotations. Dfam represents a collection of multiple sequence alignments, each containing a set of r ...
80%

PhylomeDB


PhylomeDB is a public database for complete catalogs of gene phylogenies (phylomes). Researchers are able to use this resource to visualise the history of genes with the available phylogentic trees and multiple sequence alignments.
80%

ProtClustDB


ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters.
79%

Hymenoptera Genome Database


The Hymenoptera Genome Database (HGD) is a genome informatics resource that supports the research of insects of the order Hymenoptera (e.g. bees, wasps, ants). HGD is divided into three main divisions: BeeBase, which hosts bee genomes and the Bee Pes ...
74%

Ascidian Network for In Situ Expression and Embryological Data


Aniseed is a database designed to offer a representation of ascidian embryonic development at the level of the genome (cis-regulatory sequences, spatial gene expression, protein annotation), of the cell (cell shapes, fate, lineage) or of the whole em ...
72%

GyDB


Gypsy database of mobile genetic elements
70%

PhylomeDB v3.0


It is a public database for genome-wide collections of gene phylogenies (phylomes). It is also a major source for phylogeny-based orthology and paralogy predictions. For each protein-coding gene in a seed genome, the database provides original and pr ...
65%

HOMOLENS


Database of homologous genes from Ensembl organisms and Ensembl families, structured under ACNUC sequence database management system.
63%

MetaPhors


MetaPhOrs is a public repository of phylogeny-based orthologs and paralogs that were computed using phylogenetic trees available in twelve public repositories. Currently, over 117,131,162 of unique homologs are deposited in MetaPhOrs database. These ...
63%

SymbioGBR


Database of all currently available Symbiodinium sequences and associated host information of data collected from the Great Barrier Reef into a single relational database.
58%

VKCDB - Voltage-gated K+ Channel Database


Voltage-gated potassium channel database
58%

ElastoDB


Repository for well-characterized elastin sequences to facilitate its study. The database has since expanded to include other non-elastin sequences that share elastic properties.
57%

PhEVER


Phylogenetic Exploration of Viruses and their Evolutionary Relationships
55%

RiboDB


Fast and easy retrieval of r-protein sequences from publicly available complete prokaryotic genome sequences.
52%

nsLTP


Comprehensive classification of the plant non-specific lipid transfer protein superfamily towards its sequence-structure-function analysis | Non-specific lipid transfer protein structure modeling | Theoretical structures have been calculated for the ...
51%

PPNID


PPNID: a manually curated reference database and identification tool for plant-parasitic nematode.
50%

CZEUM


The Collection of Zoosporic Eufungi at the University of Michigan (CZEUM) is a database of barcoded Chytridiomyceta and Blastocladiomycota cultures.
50%

resiDB


ResiDB is a user-friendly sequence similarity-dependent database manager for bacteria, fungi, viruses, protozoa, invertebrate, plants, archaea, environmental and whole genome shotgun sequence data. Create a new database Access existing databases Loa ...
50%

miROrtho


Computational prediction of animal microRNA genes
49%

Ligand-Gated Ion Channel Database


The Ligand-Gated Ion Channel database provides access to information about transmembrane proteins that exist under different conformations, with three primary subfamilies: the cys-loop superfamily, the ATP gated channels superfamily, and the glutamat ...
49%

Face Of Fungi


The Face Of Fungi database allows deposition of taxonomic data, phenotypic details and other useful data. Its aim is to enhance current taxonomic understanding and ultimately enable mycologists to gain better and updated insights into the current fun ...
49%

phylogenize


Phylogenize is a web tool that allows users to link microbial genes to environments, accounting for phylogeny. More specifically, given community composition data, phylogenize links genes in microbial genomes to either microbial prevalence in, or sp ...
46%

dEMBF


EMBF is a database of enzymes of microalgal biofuel feedstock.
46%

GenOrigin


A Comprehensive Protein-coding Gene Origination Database on the Evolutionary Timescale of Life.
46%

ImmunoDB


A simple access point to view gene family assignments, annotations and phylogenetic data for insect immune-related genes and gene families.
46%

nextstrain.org


A21 Retrospectively describing hepatitis C virus transmission dynamics and tracking HCV transmission networks in real-time for strategic elimination interventions | Real-time tracking of pathogen evolution | Nextstrain is an open-source project to ha ...
46%

OGDA


A comprehensive organelle genomes database for algae cpDNA and mtDNA. Algae is the earliest evolutionary biological group on the earth, are thought to have appeared at least 2.6 billion years ago. As the most complex biological group, algae have sho ...
46%

DSMZ


The DSMZ is one of the largest biological ressource centers worldwide.Its collections currently comprise more than 50,000 items, including about 27,000 different bacterial and 4,000 fungal strains, 800 human and animal cell lines, 700 plant cell line ...
46%

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