HymenopteraMine
HymenopteraMine integrates genomic data for bees, ants and the parasitoid jewel wasp. Expression and variation data are provided for A. mellifera.
Description
More detailed information about this field from each metasource.
HymenopteraMine integrates genomic data for bees, ants and the parasitoid jewel wasp. Expression and variation data are provided for A. mellifera.
metasource: Fairsharing.orgversion: FAIRsharing.org: HymenopteraMine; HymenopteraMine; DOI: https://doi.org/10.25504/FAIRsharing.PsyMBm; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
An integrated data warehouse for the Hymenoptera Genome Database
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:22.228175
Webpage:
http://hymenopteragenome.org/hymenopteramine/Webpage
More detailed information about this field from each metasource.
http://hymenopteragenome.org/hymenopteramine/
metasource: Fairsharing.orgversion: FAIRsharing.org: HymenopteraMine; HymenopteraMine; DOI: https://doi.org/10.25504/FAIRsharing.PsyMBm; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://hymenopteragenome.org/hymenopteramine
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:22.228175
Licence:
Name: LGPL-2.1Licence name
More detailed information about this field from each metasource.
Publications:
Publications
More detailed information about this field from each metasource.
Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine
PMID: 26578564
metasource: Fairsharing.org
version: FAIRsharing.org: HymenopteraMine; HymenopteraMine; DOI: https://doi.org/10.25504/FAIRsharing.PsyMBm; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://dx.doi.org/10.1093/bioinformatics/bts577
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:22.228175
Publications
More detailed information about this field from each metasource.
Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine
PMID: 26578564
metasource: Fairsharing.org
version: FAIRsharing.org: HymenopteraMine; HymenopteraMine; DOI: https://doi.org/10.25504/FAIRsharing.PsyMBm; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://dx.doi.org/10.1093/bioinformatics/bts577
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:22.228175
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Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine
PubMed citations: 60.
60 articles citing: Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine
HumanMine: advanced data searching, analysis and cross-species comparison. PMID:35820040
Nuclear translocation of vitellogenin in the honey bee (Apis mellifera). PMID:35309709
A peptide toxin in ant venom mimics vertebrate EGF-like hormones to cause long-lasting hypersensitivity in mammals. PMID:35131940
Searching beyond the streetlight: Neonicotinoid exposure alters the neurogenomic state of worker honey bees. PMID:35003705
The evolution of insect visual opsin genes with specific consideration of the influence of ocelli and life history traits. PMID:34996358
Thrice out of Asia and the adaptive radiation of the western honey bee. PMID:34860547
InsectBase 2.0: a comprehensive gene resource for insects. PMID:34792158
Hymenoptera Genome Database: new genomes and annotation datasets for improved go enrichment and orthologue analyses. PMID:34747465
Convergent Loss of Chemoreceptors across Independent Origins of Slave-Making in Ants. PMID:34668533
Multi-tiered analyses of honey bees that resist or succumb to parasitic mites and viruses. PMID:34610790
The genomic basis of army ant chemosensory adaptations. PMID:34582590
Workflows for Rapid Functional Annotation of Diverse Arthropod Genomes. PMID:34442314
Conservation genomics reveals pesticide and pathogen exposure in the declining bumble bee Bombus terricola. PMID:34181797
Identification of quantitative trait loci associated with calmness and gentleness in honey bees using whole-genome sequences. PMID:33970494
The genomic basis of evolutionary differentiation among honey bees. PMID:33947700
Gene Coexpression Network Reveals Highly Conserved, Well-Regulated Anti-Ageing Mechanisms in Old Ant Queens. PMID:33944936
Reproductive activation in honeybee (Apis mellifera) workers protects against abiotic and biotic stress. PMID:33678021
Universal fluorescence in situ hybridization (FISH) protocol for mapping repetitive DNAs in insects and other arthropods. PMID:33625598
Local Variation in Recombination Rates of the Honey Bee (Apis mellifera) Genome among Samples from Six Disparate Populations. PMID:33311731
Deformed Wing Virus in Two Widespread Invasive Ants: Geographical Distribution, Prevalence, and Phylogeny. PMID:33203145
Colony-Level Effects of Amygdalin on Honeybees and Their Microbes. PMID:33187240
Genome-wide patterns of differentiation within and among U.S. commercial honey bee stocks. PMID:33032523
Transcriptomic signatures of cold adaptation and heat stress in the winter ant (Prenolepis imparis). PMID:33002025
High-Quality Assemblies for Three Invasive Social Wasps from the Vespula Genus. PMID:32859687
Saccharomyces cerevisiae fermentation products (SCFP) stabilize the ruminal microbiota of lactating dairy cows during periods of a depressed rumen pH. PMID:32653000
Interaction of Varroa destructor and Sublethal Clothianidin Doses during the Larval Stage on Subsequent Adult Honey Bee (Apis mellifera L.) Health, Cellular Immunity, Deformed Wing Virus Levels and Differential Gene Expression. PMID:32517245
An Integrated Proteomic and Transcriptomic Analysis Reveals the Venom Complexity of the Bullet Ant Paraponera clavata. PMID:32422990
Disparate expression specificities coded by a shared Hox-C enhancer. PMID:32342858
Characteristic and Functional Study of Intersex, a Gene Related to Female Fertility in Bemisia tabaci. PMID:32158397
Genome Architecture Facilitates Phenotypic Plasticity in the Honeybee (Apis mellifera). PMID:32134461
Evaluation of reference genes for gene expression analysis by real-time quantitative PCR (qPCR) in three stingless bee species (Hymenoptera: Apidae: Meliponini). PMID:31776359
Sequence-Based Prediction of Olfactory Receptor Responses. PMID:31665762
Patterns and Constraints in the Evolution of Sperm Individualization Genes in Insects, with an Emphasis on Beetles. PMID:31590243
Cross-Kingdom Analysis of Diversity, Evolutionary History, and Site Selection within the Eukaryotic Macrophage Migration Inhibitory Factor Superfamily. PMID:31554205
Immediate Transcriptional Response to a Temperature Pulse under a Fluctuating Thermal Regime. PMID:31173075
Honey bee predisposition of resistance to ubiquitous mite infestations. PMID:31127129
Transcriptomic responses to diet quality and viral infection in Apis mellifera. PMID:31117959
A comparative analysis of methods for de novo assembly of hymenopteran genomes using either haploid or diploid samples. PMID:31019201
Rhodnius prolixus: Identification of missing components of the IMD immune signaling pathway and functional characterization of its role in eliminating bacteria. PMID:30943246
Effects of sublethal doses of clothianidin and/or V. destructor on honey bee (Apis mellifera) self-grooming behavior and associated gene expression. PMID:30914660
Genome-Wide Identification and Expression Profiling of Wnt Family Genes in the Silkworm, Bombyx mori. PMID:30862048
Apollo: Democratizing genome annotation. PMID:30726205
Sequence and structural properties of circular RNAs in the brain of nurse and forager honeybees (Apis mellifera). PMID:30683059
Parasitoid Jewel Wasp Mounts Multipronged Neurochemical Attack to Hijack a Host Brain. PMID:30293061
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. PMID:30239679
Transcriptional response of honey bee (Apis mellifera) to differential nutritional status and Nosema infection. PMID:30134827
Pattern of DNA Methylation in Daphnia: Evolutionary Perspective. PMID:30060190
Genetic Basis of Body Color and Spotting Pattern in Redheaded Pine Sawfly Larvae (Neodiprion lecontei). PMID:29496749
HsTRPA of the Red Imported Fire Ant, Solenopsis invicta, Functions as a Nocisensor and Uncovers the Evolutionary Plasticity of HsTRPA Channels. PMID:29445768
Gene Expression Profile Analysis is Directly Affected by the Selected Reference Gene: The Case of Leaf-Cutting Atta Sexdens. PMID:29419794
The molecular evolutionary dynamics of oxidative phosphorylation (OXPHOS) genes in Hymenoptera. PMID:29281964
Transcriptome sequencing reveals high isoform diversity in the ant Formica exsecta. PMID:29177112
The Nuclear and Mitochondrial Genomes of the Facultatively Eusocial Orchid Bee Euglossa dilemma. PMID:28701376
Phosphoproteome Analysis Reveals Phosphorylation Underpinnings in the Brains of Nurse and Forager Honeybees (Apis mellifera). PMID:28512345
Contrasting Sex-and Caste-Dependent piRNA Profiles in the Transposon Depleted Haplodiploid Honeybee Apis mellifera. PMID:28472327
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species. PMID:27899636
OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs. PMID:27899580
Identification of Complete Repertoire of Apis florea Odorant Receptors Reveals Complex Orthologous Relationships with Apis mellifera. PMID:27540087
Composition and genomic organization of arthropod Hox clusters. PMID:27168931
A comparative cytogenetic study of Drosophila parasitoids (Hymenoptera, Figitidae) using DNA-binding fluorochromes and FISH with 45S rDNA probe. PMID:27150102 - http://dx.doi.org/10.1093/bioinformatics/bts577
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More detailed information about this field from each metasource.
function analysis
metasource: Fairsharing.org
version: FAIRsharing.org: HymenopteraMine; HymenopteraMine; DOI: https://doi.org/10.25504/FAIRsharing.PsyMBm; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: HymenopteraMine; HymenopteraMine; DOI: https://doi.org/10.25504/FAIRsharing.PsyMBm; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
gene expression
metasource: Fairsharing.org
version: FAIRsharing.org: HymenopteraMine; HymenopteraMine; DOI: https://doi.org/10.25504/FAIRsharing.PsyMBm; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: HymenopteraMine; HymenopteraMine; DOI: https://doi.org/10.25504/FAIRsharing.PsyMBm; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
homologous
metasource: Fairsharing.org
version: FAIRsharing.org: HymenopteraMine; HymenopteraMine; DOI: https://doi.org/10.25504/FAIRsharing.PsyMBm; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
orthologous
metasource: Fairsharing.org
version: FAIRsharing.org: HymenopteraMine; HymenopteraMine; DOI: https://doi.org/10.25504/FAIRsharing.PsyMBm; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: HymenopteraMine; HymenopteraMine; DOI: https://doi.org/10.25504/FAIRsharing.PsyMBm; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
sequence variant
metasource: Fairsharing.org
version: FAIRsharing.org: HymenopteraMine; HymenopteraMine; DOI: https://doi.org/10.25504/FAIRsharing.PsyMBm; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
data management
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:22.228175
genomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:22.228175
proteomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:22.228175
Tags
More detailed information about this field from each metasource.
function analysis
metasource: Fairsharing.orgversion: FAIRsharing.org: HymenopteraMine; HymenopteraMine; DOI: https://doi.org/10.25504/FAIRsharing.PsyMBm; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: HymenopteraMine; HymenopteraMine; DOI: https://doi.org/10.25504/FAIRsharing.PsyMBm; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
gene expression
metasource: Fairsharing.orgversion: FAIRsharing.org: HymenopteraMine; HymenopteraMine; DOI: https://doi.org/10.25504/FAIRsharing.PsyMBm; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: HymenopteraMine; HymenopteraMine; DOI: https://doi.org/10.25504/FAIRsharing.PsyMBm; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
homologous
metasource: Fairsharing.orgversion: FAIRsharing.org: HymenopteraMine; HymenopteraMine; DOI: https://doi.org/10.25504/FAIRsharing.PsyMBm; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
orthologous
metasource: Fairsharing.orgversion: FAIRsharing.org: HymenopteraMine; HymenopteraMine; DOI: https://doi.org/10.25504/FAIRsharing.PsyMBm; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: HymenopteraMine; HymenopteraMine; DOI: https://doi.org/10.25504/FAIRsharing.PsyMBm; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
sequence variant
metasource: Fairsharing.orgversion: FAIRsharing.org: HymenopteraMine; HymenopteraMine; DOI: https://doi.org/10.25504/FAIRsharing.PsyMBm; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
data management
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:22.228175
genomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:22.228175
proteomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:22.228175
function analysis gene gene expression gene expression homologous orthology protein sequence variant data management genomics proteomics
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