Aphid Genomics Database

Names

More detailed information about this field from each metasource. ×

Aphid Genomics Database

metasource: Fairsharing.org
version: FAIRsharing.org: AphidBase; Aphid Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.cb05hf; Last edited: April 26, 2021, 9:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.

---

AphidBase

metasource: Fairsharing.org
version: FAIRsharing.org: AphidBase; Aphid Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.cb05hf; Last edited: April 26, 2021, 9:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:19.563691

---

aphidbase

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:19.563691

Close

Other names: AphidBase, aphidbase

The Aphid Genome Database's aim is to improve the current pea aphid genome assembly and annotation, and to provide new aphid genome sequences as well as tools for analysis of these genomes.

Webpage:

Publications:

Publications

More detailed information about this field from each metasource. ×

AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome
PMID: 20482635

metasource: Fairsharing.org
version: FAIRsharing.org: AphidBase; Aphid Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.cb05hf; Last edited: April 26, 2021, 9:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.

---

AphidBase: a database for aphid genomic resources
PMID: 17237053

metasource: Fairsharing.org
version: FAIRsharing.org: AphidBase; Aphid Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.cb05hf; Last edited: April 26, 2021, 9:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.

---

http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/6/783

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

---

http://dx.doi.org/10.1111/j.1365-2583.2009.00930.x

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:19.563691

Close

• AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome PubMed citations: 50.

  50 articles citing: AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome

  ×

  Association of voltage-gated sodium channel mutations with field-evolved pyrethroid resistant phenotypes in soybean aphid and genetic markers for their detection. PMID:35835854

  ---

  Whole-body transcriptome mining for candidate effectors from Diuraphis noxia. PMID:35799109

  ---

  A Review on Transcriptional Responses of Interactions between Insect Vectors and Plant Viruses. PMID:35203347

  ---

  Jekyll or Hyde? The genome (and more) of Nesidiocoris tenuis, a zoophytophagous predatory bug that is both a biological control agent and a pest. PMID:33305885

  ---

  Evolutionary novelty in the apoptotic pathway of aphids. PMID:33288705

  ---

  Big Genes, Small Effectors: Pea Aphid Cassette Effector Families Composed From Miniature Exons. PMID:33013944

  ---

  RNAi-Based Functional Genomics in Hemiptera. PMID:32825516

  ---

  The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest. PMID:32698880

  ---

  Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum. PMID:32471448

  ---

  Lysine Acetyltransferase p300/CBP Plays an Important Role in Reproduction, Embryogenesis and Longevity of the Pea Aphid Acyrthosiphon pisum. PMID:32357443

  ---

  Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest. PMID:32171258

  ---

  Gene Family Evolution in the Pea Aphid Based on Chromosome-Level Genome Assembly. PMID:31173104

  ---

  Genome-Wide Identification and Expression Profiling of Wnt Family Genes in the Silkworm, Bombyx mori. PMID:30862048

  ---

  Bacteriocyte cell death in the pea aphid/Buchnera symbiotic system. PMID:29432146

  ---

  Comparative genomics analysis of triatomines reveals common first line and inducible immunity-related genes and the absence of Imd canonical components among hemimetabolous arthropods. PMID:29357911

  ---

  Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species. PMID:28190401

  ---

  OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs. PMID:27899580

  ---

  Disruption of phenylalanine hydroxylase reduces adult lifespan and fecundity, and impairs embryonic development in parthenogenetic pea aphids. PMID:27694983

  ---

  Vector-Borne Bacterial Plant Pathogens: Interactions with Hemipteran Insects and Plants. PMID:27555855

  ---

  Genetic Mapping of a Major Resistance Gene to Pea Aphid (Acyrthosipon pisum) in the Model Legume Medicago truncatula. PMID:27483247

  ---

  InsectBase: a resource for insect genomes and transcriptomes. PMID:26578584

  ---

  The evolutionary landscape of intergenic trans-splicing events in insects. PMID:26521696

  ---

  Germ plasm localisation of the HELICc of Vasa in Drosophila: analysis of domain sufficiency and amino acids critical for localisation. PMID:26419889

  ---

  Characterization and expression profiling of glutathione S-transferases in the diamondback moth, Plutella xylostella (L.). PMID:25887517

  ---

  Double-stranded RNA in the biological control of grain aphid (Sitobion avenae F.). PMID:25467938

  ---

  OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software. PMID:25428351

  ---

  Comparative transcriptomic analyses revealed divergences of two agriculturally important aphid species. PMID:25424897

  ---

  iPathCons and iPathDB: an improved insect pathway construction tool and the database. PMID:25388589

  ---

  Whole-genome re-sequencing of non-model organisms: lessons from unmapped reads. PMID:25269379

  ---

  Engineering plants for aphid resistance: current status and future perspectives. PMID:25151153

  ---

  Phylogenetic analyses and characterization of RNase X25 from Drosophila melanogaster suggest a conserved housekeeping role and additional functions for RNase T2 enzymes in protostomes. PMID:25133712

  ---

  Masculinization of the x chromosome in the pea aphid. PMID:23950732

  ---

  KONAGAbase: a genomic and transcriptomic database for the diamondback moth, Plutella xylostella. PMID:23837716

  ---

  Computational framework to support integration of biomolecular and clinical data within a translational approach. PMID:23742129

  ---

  The banana genome hub. PMID:23707967

  ---

  Computational identification of functional introns: high positional conservation of introns that harbor RNA genes. PMID:23605046

  ---

  Mechanisms and dynamics of orphan gene emergence in insect genomes. PMID:23348040

  ---

  OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs. PMID:23180791

  ---

  Chado controller: advanced annotation management with a community annotation system. PMID:22285827

  ---

  MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects. PMID:22192575

  ---

  GyDB mobilomics: LTR retroelements and integrase-related transposons of the pea aphid Acyrthosiphon pisum genome. PMID:22016855

  ---

  Genomics of environmentally induced phenotypes in 2 extremely plastic arthropods. PMID:21525179

  ---

  Diversity in protein glycosylation among insect species. PMID:21373189

  ---

  Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genome. PMID:21092105

  ---

  PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions. PMID:21075798

  ---

  OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011. PMID:20972218

  ---

  Combining next-generation sequencing strategies for rapid molecular resource development from an invasive aphid species, Aphis glycines. PMID:20614011

  ---

  A full-length cDNA resource for the pea aphid, Acyrthosiphon pisum. PMID:20482637

  ---

  Evolution of a genomic regulatory domain: the role of gene co-option and gene duplication in the Enhancer of split complex. PMID:20458100

  ---

  Genome sequence of the pea aphid Acyrthosiphon pisum. PMID:20186266
• AphidBase: a database for aphid genomic resources PubMed citations: 18.

  18 articles citing: AphidBase: a database for aphid genomic resources

  ×

  Potato leafroll virus reduces Buchnera aphidocola titer and alters vector transcriptome responses. PMID:34907187

  ---

  Cross-Kingdom Analysis of Diversity, Evolutionary History, and Site Selection within the Eukaryotic Macrophage Migration Inhibitory Factor Superfamily. PMID:31554205

  ---

  ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods. PMID:27242037

  ---

  Assessment and reconstruction of novel HSP90 genes: duplications, gains and losses in fungal and animal lineages. PMID:24066039

  ---

  Why so many unknown genes? Partitioning orphans from a representative transcriptome of the lone star tick Amblyomma americanum. PMID:23445305

  ---

  ASGARD: an open-access database of annotated transcriptomes for emerging model arthropod species. PMID:23180770

  ---

  Expression of small RNA in Aphis gossypii and its potential role in the resistance interaction with melon. PMID:23173035

  ---

  Deep sequencing of the transcriptomes of soybean aphid and associated endosymbionts. PMID:22984624

  ---

  A remarkably stable TipE gene cluster: evolution of insect Para sodium channel auxiliary subunits. PMID:22098672

  ---

  CycADS: an annotation database system to ease the development and update of BioCyc databases. PMID:21474551

  ---

  AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome. PMID:20482635

  ---

  Genome sequence of the pea aphid Acyrthosiphon pisum. PMID:20186266

  ---

  Aphid wing dimorphisms: linking environmental and genetic control of trait variation. PMID:20083636

  ---

  Genomic resources for invertebrate vectors of human pathogens, and the role of VectorBase. PMID:18262474

  ---

  The Molecular Biology Database Collection: 2008 update. PMID:18025043

  ---

  Genomic resources for Myzus persicae: EST sequencing, SNP identification, and microarray design. PMID:18021414

  ---

  A protein key to plant virus transmission at the tip of the insect vector stylet. PMID:17962414

  ---

  Gene knockdown by RNAi in the pea aphid Acyrthosiphon pisum. PMID:17903251
• http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/6/783
• http://dx.doi.org/10.1111/j.1365-2583.2009.00930.x

Tags:

Tags

More detailed information about this field from each metasource. ×

genome

metasource: Fairsharing.org
version: FAIRsharing.org: AphidBase; Aphid Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.cb05hf; Last edited: April 26, 2021, 9:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.

---

genome annotation

metasource: Fairsharing.org
version: FAIRsharing.org: AphidBase; Aphid Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.cb05hf; Last edited: April 26, 2021, 9:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.

---

genomic assembly

metasource: Fairsharing.org
version: FAIRsharing.org: AphidBase; Aphid Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.cb05hf; Last edited: April 26, 2021, 9:33 a.m.; Last accessed: Jan 03 2022 7:08 p.m.

---

genomics databases (non-vertebrate)

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

---

invertebrate genome databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

---

genomics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:19.563691

Close

genome genome annotation genomic assembly genomics invertebrate genome genomics