FAIRsharing.mzk12n; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:19.756596

brassica_genome
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:19.756596

Other names: brassica_genome

This site hosts Brassica genome databases.

Webpage:

http://www.brassicagenome.net/details.php

Publications:

Publications
More detailed information about this field from each metasource.

The genome of the mesopolyploid crop species Brassica rapa
PMID: 21873998
metasource: Fairsharing.org
version: FAIRsharing.org: Brassica Genome; Brassica Genome; DOI: https://doi.org/10.25504/FAIRsharing.mzk12n; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

http://dx.doi.org/10.1038/ng.919
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:19.756596

The genome of the mesopolyploid crop species Brassica rapa PubMed citations: 905.

905 articles citing: The genome of the mesopolyploid crop species Brassica rapa

A Chromosome Level Genome Assembly of a Winter Turnip Rape (Brassica rapa L.) to Explore the Genetic Basis of Cold Tolerance. PMID:35909760
Asymmetric subgenomic chromatin architecture impacts on gene expression in resynthesized and natural allopolyploid Brassica napus. PMID:35906482
Subgenome dominance and its evolutionary implications in crop domestication and breeding. PMID:35873727
Comparative genomics reveals the molecular mechanism of salt adaptation for zoysiagrasses. PMID:35864464
Recent transcriptomic studies to elucidate the plant adaptive response to spaceflight and to simulated space environments. PMID:35856037
Further insight into decreases in seed glucosinolate content based on QTL mapping and RNA-seq in Brassica napus L. PMID:35841418
Pervasive genome duplications across the plant tree of life and their links to major evolutionary innovations and transitions. PMID:35782740
Refining bulk segregant analyses: ontology-mediated discovery of flowering time genes in Brassica oleracea. PMID:35780674
Transcriptomics Integrated with Metabolomics Unveil Carotenoids Accumulation and Correlated Gene Regulation in White and Yellow-Fleshed Turnip (Brassica rapa ssp. rapa). PMID:35741715
Anthocyanins identification and transcriptional regulation of anthocyanin biosynthesis in purple Brassica napus. PMID:35723867
Conversion between duplicated genes generated by polyploidization contributes to the divergence of poplar and willow. PMID:35710333
Developing a bioinformatics pipeline for comparative protein classification analysis. PMID:35668373
Genome-Wide Identification and Characterization of TCP Family Genes in Pak-Choi [Brassica campestris (syn. Brassica rapa) ssp. chinensis var. communis]. PMID:35615139
Comparative Transcriptome Analysis Revealed the Freezing Tolerance Signaling Events in Winter Rapeseed (Brassica rapa L.). PMID:35559032
PolyReco: A Method to Automatically Label Collinear Regions and Recognize Polyploidy Events Based on the K S Dotplot. PMID:35518356
Non-Heading Chinese Cabbage Database: An Open-Access Platform for the Genomics of Brassica campestris (syn. Brassica rapa) ssp. chinensis. PMID:35448733
Multienvironment QTL analysis delineates a major locus associated with homoeologous exchanges for water-use efficiency and seed yield in canola. PMID:35445756
Systematic trait dissection in oilseed rape provides a comprehensive view, further insight, and exact roadmap for yield determination. PMID:35440054
Admixture of divergent genomes facilitates hybridization across species in the family Brassicaceae. PMID:35403705
Identification and charactering of APX genes provide new insights in abiotic stresses response in Brassica napus. PMID:35402101
Global Patterns of Subgenome Evolution in Organelle-Targeted Genes of Six Allotetraploid Angiosperms. PMID:35383845
Improved Reference Genome Annotation of Brassica rapa by Pacific Biosciences RNA Sequencing. PMID:35371168
Functional conservation and divergence in plant-specific GRF gene family revealed by sequences and expression analysis. PMID:35350448
BnaA03.MKK5-BnaA06.MPK3/BnaC03.MPK3 Module Positively Contributes to Sclerotinia sclerotiorum Resistance in Brassica napus. PMID:35270079
Comprehensive analysis of 1R- and 2R-MYBs reveals novel genic and protein features, complex organisation, selective expansion and insights into evolutionary tendencies. PMID:35260976
Genome-wide evolution and expression analysis of the MYB-CC gene family in Brassica spp. PMID:35237467
The adaptive evolution of Euryale ferox to the aquatic environment through paleo-hexaploidization. PMID:35218099
Quantitative Trait Loci for Heat Stress Tolerance in Brassica rapa L. Are Distributed across the Genome and Occur in Diverse Genetic Groups, Flowering Phenologies and Morphotypes. PMID:35205341
Drought tolerance improvement in Solanum lycopersicum: an insight into "OMICS" approaches and genome editing. PMID:35186660
Large-scale analyses of heat shock transcription factors and database construction based on whole-genome genes in horticultural and representative plants. PMID:35184193
IAGS: Inferring Ancestor Genome Structure under a Wide Range of Evolutionary Scenarios. PMID:35176153
A cluster of transcripts identifies a transition stage initiating leafy head growth in heading morphotypes of Brassica. PMID:35118736
Development of novel clubroot resistant rapeseed lines (Brassica napus L.) effective against Japanese field isolates by marker assisted selection. PMID:35087317
Expanding the genetic variation of Brassica juncea by introgression of the Brassica rapa Genome. PMID:35043197
Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways. PMID:35037202
Chromosome-level Thlaspi arvense genome provides new tools for translational research and for a newly domesticated cash cover crop of the cooler climates. PMID:34990041
Genetic and Molecular Characterization of a Self-Compatible Brassica rapa Line Possessing a New Class II S Haplotype. PMID:34961286
Functional Characterization of BrF3'H, Which Determines the Typical Flavonoid Profile of Purple Chinese Cabbage. PMID:34956292
Comprehensive Analysis of the SUV Gene Family in Allopolyploid Brassica napus and Its Diploid Ancestors. PMID:34946800
Advances in Multi-Omics Approaches for Molecular Breeding of Black Rot Resistance in Brassica oleracea L. PMID:34938304
BrCNGC gene family in field mustard: genome-wide identification, characterization, comparative synteny, evolution and expression profiling. PMID:34921218
Topology of the redox network during induction of photosynthesis as revealed by time-resolved proteomics in tobacco. PMID:34919428
Comprehensive Analysis of Arabinogalactan Protein-Encoding Genes Reveals the Involvement of Three BrFLA Genes in Pollen Germination in Brassica rapa. PMID:34884948
Genome-wide and expression analysis of B-box gene family in pepper. PMID:34872495
Whole-Genome Identification and Comparative Expression Analysis of Anthocyanin Biosynthetic Genes in Brassica napus. PMID:34868247
Asymmetric Divergence in Transmitted SNPs of DNA Replication/Transcription and Their Impact on Gene Expression in Polyploid Brassica napus. PMID:34868229
Novel genome characteristics contribute to the invasiveness of Phragmites australis (common reed). PMID:34839548
The BrGI Circadian Clock Gene Is Involved in the Regulation of Glucosinolates in Chinese Cabbage. PMID:34828270
Systematic analysis of CCCH zinc finger family in Brassica napus showed that BnRR-TZFs are involved in stress resistance. PMID:34814855
Sat-BSA: an NGS-based method using local de novo assembly of long reads for rapid identification of genomic structural variations associated with agronomic traits. PMID:34776737
Grape Small Auxin Upregulated RNA (SAUR) 041 Is a Candidate Regulator of Berry Size in Grape. PMID:34769249
BrWAX2 plays an essential role in cuticular wax biosynthesis in Chinese cabbage (Brassica rapa L. ssp. pekinensis). PMID:34766198
BRAD V3.0: an upgraded Brassicaceae database. PMID:34755871
Characterization of the Brassica napus Flavonol Synthase Gene Family Reveals Bifunctional Flavonol Synthases. PMID:34721462
Non-vernalization requirement in Chinese kale caused by loss of BoFLC and low expressions of its paralogs. PMID:34716468
DNA Methylation Level Changes in Transgenic Chinese Cabbage (Brassica rapa ssp. pekinensis) Plants and Their Effects on Corresponding Gene Expression Patterns. PMID:34680957
Genome-Wide Identification, Evolution, and Comparative Analysis of B-Box Genes in Brassica rapa, B. oleracea, and B. napus and Their Expression Profiling in B. rapa in Response to Multiple Hormones and Abiotic Stresses. PMID:34638707
Circular RNAs Repertoire and Expression Profile during Brassica rapa Pollen Development. PMID:34638635
Distribution, expression and methylation analysis of positively selected genes provides insights into the evolution in Brassica rapa. PMID:34624037
Insights Into the Molecular Evolution of AT-Hook Motif Nuclear Localization Genes in Brassica napus. PMID:34567028
Non-homologous chromosome pairing during meiosis in haploid Brassica rapa. PMID:34542669
Effects of BrMYC2/3/4 on Plant Development, Glucosinolate Metabolism, and Sclerotinia sclerotiorum Resistance in Transgenic Arabidopsis thaliana. PMID:34539701
Incipient diploidization of the medicinal plant Perilla within 10,000 years. PMID:34535649
Restoring fertility in yeast hybrids: Breeding and quantitative genetics of beneficial traits. PMID:34518218
A Modified Meiotic Recombination in Brassica napus Largely Improves Its Breeding Efficiency. PMID:34440003
Sequencing and Chromosome-Scale Assembly of Plant Genomes, Brassica rapa as a Use Case. PMID:34439964
Conserved oligomeric Golgi (COG) complex genes functioning in defense are expressed in root cells undergoing a defense response to a pathogenic infection and exhibit regulation my MAPKs. PMID:34437620
Functional homoeologous alleles of CONSTANS contribute to seasonal crop type in rapeseed. PMID:34410456
Statistical Identification of Important Nodes in Biological Systems. PMID:34393461
A single amino acid residue substitution in BraA04g017190.3C, a histone methyltransferase, results in premature bolting in Chinese cabbage (Brassica rapa L. ssp. Pekinensis). PMID:34388969
Extra-large G-proteins influence plant response to Sclerotinia sclerotiorum by regulating glucosinolate metabolism in Brassica juncea. PMID:34374201
Molecular Breeding Strategy and Challenges Towards Improvement of Downy Mildew Resistance in Cauliflower (Brassica oleracea var. botrytis L.). PMID:34354719
Genome-Wide Comparative Analysis of Flowering-Time Genes; Insights on the Gene Family Expansion and Evolutionary Perspective. PMID:34290729
Metabolite Profiling and Transcriptome Analysis Provide Insight into Seed Coat Color in Brassica juncea. PMID:34281271
Draft Genome Assembly and Transcriptome Dataset for European Turnip (Brassica rapa L. ssp. rapifera), ECD4 Carrying Clubroot Resistance. PMID:34276765
Trajectories of Homoeolog-Specific Expression in Allotetraploid Tragopogon castellanus Populations of Independent Origins. PMID:34249049
Comparative Transcriptome-Based Mining of Senescence-Related MADS, NAC, and WRKY Transcription Factors in the Rapid-Senescence Line DLS-91 of Brassica rapa. PMID:34199515
Genome-Wide Analysis of the YABBY Transcription Factor Family in Rapeseed (Brassica napus L.). PMID:34199012
A complex interplay of Gβ and Gγ proteins regulates plant growth and defence traits in the allotetraploid Brassica juncea. PMID:34176052
Characterization of Histone H3 Lysine 4 and 36 Tri-methylation in Brassica rapa L. PMID:34163501
Genome-wide association study and its applications in the non-model crop Sesamum indicum. PMID:34157965
New Players in the Interaction Between Beetle Polygalacturonases and Plant Polygalacturonase-Inhibiting Proteins: Insights From Proteomics and Gene Expression Analyses. PMID:34149758
Molecular genetic diversity and population structure analyses of rutabaga accessions from Nordic countries as revealed by single nucleotide polymorphism markers. PMID:34118867
Characterization of APX and APX-R gene family in Brassica juncea and B. rapa for tolerance against abiotic stresses. PMID:34115169
Status and advances in mining for blackleg (Leptosphaeria maculans) quantitative resistance (QR) in oilseed rape (Brassica napus). PMID:34104999
Challenges and prospects for a potential allohexaploid Brassica crop. PMID:34089067
Characterization of Brassica rapa metallothionein and phytochelatin synthase genes potentially involved in heavy metal detoxification. PMID:34086824
The Expression Characteristics of NPF Genes and Their Response to Vernalization and Nitrogen Deficiency in Rapeseed. PMID:34066572
Comprehensive analysis of SSRs and database construction using all complete gene-coding sequences in major horticultural and representative plants. PMID:34059664
Molecular basis of heterosis and related breeding strategies reveal its importance in vegetable breeding. PMID:34059656
Impacts of allopolyploidization and structural variation on intraspecific diversification in Brassica rapa. PMID:34059118
A prescient evolutionary model for genesis, duplication and differentiation of MIR160 homologs in Brassicaceae. PMID:34052911
Genome structural evolution in Brassica crops. PMID:34045706
Exploring the gene pool of Brassica napus by genomics-based approaches. PMID:34031989
Fine Mapping and Candidate Gene Identification of a White Flower Gene BrWF3 in Chinese Cabbage (Brassica rapa L. ssp. pekinensis). PMID:34025693
Comparative phylogenetics of repetitive elements in a diverse order of flowering plants (Brassicales). PMID:33993297
Whole-Genome Sequence of Synthesized Allopolyploids in Cucumis Reveals Insights into the Genome Evolution of Allopolyploidization. PMID:33977063
Genome sequencing sheds light on the contribution of structural variants to Brassica oleracea diversification. PMID:33952264
Brassica rapa Domestication: Untangling Wild and Feral Forms and Convergence of Crop Morphotypes. PMID:33930151
Nitrogen Signaling Genes and SOC1 Determine the Flowering Time in a Reciprocal Negative Feedback Loop in Chinese Cabbage (Brassica rapa L.) Based on CRISPR/Cas9-Mediated Mutagenesis of Multiple BrSOC1 Homologs. PMID:33924895
Identification and Validation of Genetic Variations in Transgenic Chinese Cabbage Plants (Brassica rapa ssp. pekinensis) by Next-Generation Sequencing. PMID:33922022
Genome-Wide In Silico Identification and Comparative Analysis of Dof Gene Family in Brassica napus. PMID:33916912
Evolution of pathogen response genes associated with increased disease susceptibility during adaptation to an extreme drought in a Brassica rapa plant population. PMID:33882815
The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible. PMID:33863805
Use of Comparative Transcriptomics Combined With Physiological Analyses to Identify Key Factors Underlying Cadmium Accumulation in Brassica juncea L. PMID:33854528
Evolutionary diversification of cytokinin-specific glucosyltransferases in angiosperms and enigma of missing cis-zeatin O-glucosyltransferase gene in Brassicaceae. PMID:33846460
Magnesium and calcium overaccumulate in the leaves of a schengen3 mutant of Brassica rapa. PMID:33831190
Sequence and functional analysis of MIR319 promoter homologs from Brassica juncea reveals regulatory diversification and altered expression under stress. PMID:33797588
Divergence of three BRX homoeologs in Brassica rapa and its effect on leaf morphology. PMID:33790228
Genome-wide analysis of long noncoding RNAs, 24-nt siRNAs, DNA methylation and H3K27me3 marks in Brassica rapa. PMID:33788851
Genome-wide characterization and analysis of bHLH transcription factors related to anthocyanin biosynthesis in spine grapes (Vitis davidii). PMID:33767241
Current Status of the Disease-Resistant Gene(s)/QTLs, and Strategies for Improvement in Brassica juncea. PMID:33747001
Comparison of Brassica Genomes reveals asymmetrical gene retention between functional groups of genes in recurrent polyploidizations. PMID:33742369
Using wild relatives and related species to build climate resilience in Brassica crops. PMID:33730183
Genome-wide identification and characterization of the OFP gene family in Chinese cabbage (Brassica rapa L. ssp. pekinensis). PMID:33717690
Genomics Armed With Diversity Leads the Way in Brassica Improvement in a Changing Global Environment. PMID:33679880
Genome-wide analysis of changes in miRNA and target gene expression reveals key roles in heterosis for Chinese cabbage biomass. PMID:33642594
The chromosome-based lavender genome provides new insights into Lamiaceae evolution and terpenoid biosynthesis. PMID:33642593
Characterization and fine mapping of a new dwarf mutant in Brassica napus. PMID:33637037
Genome Triplication Leads to Transcriptional Divergence of FLOWERING LOCUS C Genes During Vernalization in the Genus Brassica. PMID:33633752
Brassica carinata genome characterization clarifies U's triangle model of evolution and polyploidy in Brassica. PMID:33599732
Ribosome heterogeneity and specialization in development. PMID:33565275
Variability in the Viral Protein Linked to the Genome of Turnip Mosaic Virus Influences Interactions with eIF(iso)4Es in Brassica rapa. PMID:33551696
Hydrogen sulfide promotes flowering in heading Chinese cabbage by S-sulfhydration of BraFLCs. PMID:33518701
Statistical Identification of Important Nodes in Biological Systems. PMID:33456274
QTL Mapping and Candidate Gene Identification of Swollen Root Formation in Turnip. PMID:33440867
Analysis of Transcriptional Changes in Different Brassica napus Synthetic Allopolyploids. PMID:33440604
Comparative transcriptome analysis revealed differential gene expression in multiple signaling pathways at flowering in polyploid Brassica rapa. PMID:33436051
Recent Findings Unravel Genes and Genetic Factors Underlying Leptosphaeria maculans Resistance in Brassica napus and Its Relatives. PMID:33396785
Genome-Wide Identification and Evolution of Receptor-Like Kinases (RLKs) and Receptor like Proteins (RLPs) in Brassica juncea. PMID:33396674
Challenges and Opportunities of Light-Emitting Diode (LED) as Key to Modulate Antioxidant Compounds in Plants. A Review. PMID:33396461
A chromosome-level reference genome of non-heading Chinese cabbage [Brassica campestris (syn. Brassica rapa) ssp. chinensis]. PMID:33372175
Genetic and genomic resources to study natural variation in Brassica rapa. PMID:33364543
Perception of unrelated microbe-associated molecular patterns triggers conserved yet variable physiological and transcriptional changes in Brassica rapa ssp. pekinensis. PMID:33328480
A chromosome-scale reference genome of Lobularia maritima, an ornamental plant with high stress tolerance. PMID:33328471
The mutation of ent-kaurene synthase, a key enzyme involved in gibberellin biosynthesis, confers a non-heading phenotype to Chinese cabbage (Brassica rapa L. ssp. pekinensis). PMID:33328441
A highly contiguous genome assembly of Brassica nigra (BB) and revised nomenclature for the pseudochromosomes. PMID:33308149
Assembly of the non-heading pak choi genome and comparison with the genomes of heading Chinese cabbage and the oilseed yellow sarson. PMID:33283404
Genome Size Variation and Comparative Genomics Reveal Intraspecific Diversity in Brassica rapa. PMID:33281844
Frontiers in Dissecting and Managing Brassica Diseases: From Reference-Based RGA Candidate Identification to Building Pan-RGAomes. PMID:33255840
Comprehensive dissection into morpho-physiologic responses, ionomic homeostasis, and transcriptomic profiling reveals the systematic resistance of allotetraploid rapeseed to salinity. PMID:33228523
Unbiased Subgenome Evolution in Allotetraploid Species of Ephedra and Its Implications for the Evolution of Large Genomes in Gymnosperms. PMID:33196777
Genome-Wide Differential DNA Methylation and miRNA Expression Profiling Reveals Epigenetic Regulatory Mechanisms Underlying Nitrogen-Limitation-Triggered Adaptation and Use Efficiency Enhancement in Allotetraploid Rapeseed. PMID:33182819
Genome-wide identification, and phylogenetic and expression profiling analyses, of XTH gene families in Brassica rapa L. and Brassica oleracea L. PMID:33176678
Genome-wide identification of the restorer-of-fertility-like (RFL) gene family in Brassica napus and expression analysis in Shaan2A cytoplasmic male sterility. PMID:33148177
Overexpression of Two CCCH-type Zinc-Finger Protein Genes Leads to Pollen Abortion in Brassica campestris ssp. chinensis. PMID:33138166
Genome Size Evolution Mediated by Gypsy Retrotransposons in Brassicaceae. PMID:33137519
Evolution of the Brassicaceae-specific MS5-Like family and neofunctionalization of the novel MALE STERILITY 5 gene essential for male fertility in Brassica napus. PMID:33128826
Genetics of days to flowering, maturity and plant height in natural and derived forms of Brassica rapa L. PMID:33084931
A chromosome-scale assembly of allotetraploid Brassica juncea (AABB) elucidates comparative architecture of the A and B genomes. PMID:33073461
A high-quality Brassica napus genome reveals expansion of transposable elements, subgenome evolution and disease resistance. PMID:33073445
Genome-wide identification and comparative analysis of diacylglycerol kinase (DGK) gene family and their expression profiling in Brassica napus under abiotic stress. PMID:33059598
Genome-wide identification and analysis of high-affinity nitrate transporter 2 (NRT2) family genes in rapeseed (Brassica napus L.) and their responses to various stresses. PMID:33036562
Rolling Circle Amplification (RCA)-Mediated Genome-Wide ihpRNAi Mutant Library Construction in Brassica napus. PMID:33008068
An extended KASP-SNP resource for molecular breeding in Chinese cabbage(Brassica rapa L. ssp. pekinensis). PMID:33007009
Genome-Wide Investigation and Expression Analysis of K+-Transport-Related Gene Families in Chinese Cabbage (Brassica rapa ssp. pekinensis). PMID:32990910
Genome-Wide Identification and Analysis of SRO Gene Family in Chinese Cabbage (Brassica rapa L.). PMID:32962109
Endogenous activated small interfering RNAs in virus-infected Brassicaceae crops show a common host gene-silencing pattern affecting photosynthesis and stress response. PMID:32945560
Natural variation and evolutionary dynamics of transposable elements in Brassica oleracea based on next-generation sequencing data. PMID:32922817
Engineering Plant Synthetic Pathways for the Biosynthesis of Novel Antifungals. PMID:32875080
Expression of Brassica napus GLO1 is sufficient to breakdown artificial self-incompatibility in Arabidopsis thaliana. PMID:32862319
The Genome Sequence of Alpine Megacarpaea delavayi Identifies Species-Specific Whole-Genome Duplication. PMID:32849811
Molecular Characterization, Expression Pattern and Function Analysis of Glycine-Rich Protein Genes Under Stresses in Chinese Cabbage (Brassica rapa L. ssp. pekinensis). PMID:32849790
A Genome-Wide Survey of MATE Transporters in Brassicaceae and Unveiling Their Expression Profiles under Abiotic Stress in Rapeseed. PMID:32825473
Molecular Evolutionary and Expression Pattern Analysis of AKR Genes Shed New Light on GalUR Functional Characteristics in Brassica rapa. PMID:32825292
The Brassica napus wall-associated kinase-like (WAKL) gene Rlm9 provides race-specific blackleg resistance. PMID:32794614
Development and Application of SSR Markers Related to Genes Involved in Leaf Adaxial-Abaxial Polarity Establishment in Chinese Cabbage (Brassica rapa L. ssp. pekinensis). PMID:32793286
Characterization of B-Genome Specific High Copy hAT MITE Families in Brassica nigra Genome. PMID:32793262
Patterns of Expansion and Expression Divergence of the Polygalacturonase Gene Family in Brassica oleracea. PMID:32784897
A simple and efficient Agrobacterium-mediated transient expression system to dissect molecular processes in Brassica rapa and Brassica napus. PMID:32775949
Single-Molecule Real-Time Transcript Sequencing of Turnips Unveiling the Complexity of the Turnip Transcriptome. PMID:32769136
Rapid evolutionary changes in gene expression in response to climate fluctuations. PMID:32761923
Genome-Wide Duplication of Allotetraploid Brassica napus Produces Novel Characteristics and Extensive Ploidy Variation in Self-Pollinated Progeny. PMID:32753368
A high-quality reference genome for cabbage obtained with SMRT reveals novel genomic features and evolutionary characteristics. PMID:32709963
Two Clubroot-Resistance Genes, Rcr3 and Rcr9wa, Mapped in Brassica rapa Using Bulk Segregant RNA Sequencing. PMID:32708772
The oilseed rape developmental expression resource: a resource for the investigation of gene expression dynamics during the floral transition in oilseed rape. PMID:32693783
Comparison of the cytoplastic genomes by resequencing: insights into the genetic diversity and the phylogeny of the agriculturally important genus Brassica. PMID:32660507
Meiotic Chromosome Stability and Suppression of Crossover Between Non-homologous Chromosomes in xBrassicoraphanus, an Intergeneric Allotetraploid Derived From a Cross Between Brassica rapa and Raphanus sativus. PMID:32612629
Genome-Wide Identification and Expression Profiling of Monosaccharide Transporter Genes Associated with High Harvest Index Values in Rapeseed (Brassica napus L.). PMID:32549312
Abundant expression of maternal siRNAs is a conserved feature of seed development. PMID:32541052
Genome-wide analysis of proline-rich extension-like receptor protein kinase (PERK) in Brassica rapa and its association with the pollen development. PMID:32539701
Comparative transcriptome analysis between a resistant and a susceptible Chinese cabbage in response to Hyaloperonospora brassicae. PMID:32538253
Revealing biomass heterosis in the allodiploid xBrassicoraphanus, a hybrid between Brassica rapa and Raphanus sativus, through integrated transcriptome and metabolites analysis. PMID:32493222
Deciphering the transcriptional regulatory networks that control size, color, and oil content in Brassica rapa seeds. PMID:32467731
Genome sequence and analysis of a Japanese radish (Raphanus sativus) cultivar named 'Sakurajima Daikon' possessing giant root. PMID:32426809
Cotton Duplicated Genes Produced by Polyploidy Show Significantly Elevated and Unbalanced Evolutionary Rates, Overwhelmingly Perturbing Gene Tree Topology. PMID:32391043
Variation among 532 genomes unveils the origin and evolutionary history of a global insect herbivore. PMID:32385305
Homoeolog expression bias and expression level dominance (ELD) in four tissues of natural allotetraploid Brassica napus. PMID:32349676
Cloning and Functional Analysis of BcMYB101 Gene Involved in Leaf Development in Pak Choi (Brassica rapa ssp. Chinensis). PMID:32326634
Red Chinese Cabbage Transcriptome Analysis Reveals Structural Genes and Multiple Transcription Factors Regulating Reddish Purple Color. PMID:32326209
Comparative Transcriptome Analysis of Gene Expression and Regulatory Characteristics Associated with Different Vernalization Periods in Brassica rapa. PMID:32260536
Identification, evolution and expression analyses of whole genome-wide TLP gene family in Brassica napus. PMID:32228446
An update on the arsenal: mining resistance genes for disease management of Brassica crops in the genomic era. PMID:32194970
Comprehensive analyses of the annexin (ANN) gene family in Brassica rapa, Brassica oleracea and Brassica napus reveals their roles in stress response. PMID:32152363
Divergent receptor proteins confer responses to different karrikins in two ephemeral weeds. PMID:32152287
Gene presence-absence variation associates with quantitative Verticillium longisporum disease resistance in Brassica napus. PMID:32139810
Preferential gene retention increases the robustness of cold regulation in Brassicaceae and other plants after polyploidization. PMID:32133148
Comparative analysis of basic helix-loop-helix gene family among Brassica oleracea, Brassica rapa, and Brassica napus. PMID:32093614
Whole-genome sequencing and analysis of the Chinese herbal plant Gelsemium elegans. PMID:32082980
Impact of whole genome triplication on the evolutionary history and the functional dynamics of regulatory genes involved in Brassica self-incompatibility signalling pathway. PMID:32080762
Characterization of the OFP Gene Family and its Putative Involvement of Tuberous Root Shape in Radish. PMID:32075122
Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff. PMID:32060277
Molecular Modeling of Epithiospecifier and Nitrile-Specifier Proteins of Broccoli and Their Interaction with Aglycones. PMID:32054008
Identification of eukaryotic translation initiation factors and the temperature-dependent nature of Turnip mosaic virus epidemics in allopolyploid Brassica juncea. PMID:32051808
Systematic Analysis of the DNA Methylase and Demethylase Gene Families in Rapeseed (Brassica napus L.) and Their Expression Variations After Salt and Heat stresses. PMID:32023925
Sequential Paleotetraploidization shaped the carrot genome. PMID:32005164
Genetic dissection of thousand-seed weight and fine mapping of cqSW.A03-2 via linkage and association analysis in rapeseed (Brassica napus L.). PMID:32002584
Duplication and functional divergence of a calcium sensor in the Brassicaceae. PMID:31989164
Expression Analysis of XTH in Stem Swelling of Stem Mustard and Selection of Reference Genes. PMID:31968559
Intraspecific diversification of the crop wild relative Brassica cretica Lam. using demographic model selection. PMID:31937246
Defect in Brnym1, a magnesium-dechelatase protein, causes a stay-green phenotype in an EMS-mutagenized Chinese cabbage (Brassica campestris L. ssp. pekinensis) line. PMID:31934339
Gene Expression Changes During the Allo-/Deallopolyploidization Process of Brassica napus. PMID:31921314
Identification and fine mapping of qSB.A09, a major QTL that controls shoot branching in Brassica rapa ssp. chinensis Makino. PMID:31919538
Genome-Wide Identification and Analysis of the Cytochrome B5 Protein Family in Chinese Cabbage (Brassica rapa L. ssp. Pekinensis). PMID:31871927
Fine mapping and candidate gene analysis of a seed glucosinolate content QTL, qGSL-C2, in rapeseed (Brassica napus L.). PMID:31832742
Bioinformatics Analysis of the Lipoxygenase Gene Family in Radish (Raphanus sativus) and Functional Characterization in Response to Abiotic and Biotic Stresses. PMID:31816887
Genome-wide transcriptome analysis reveals molecular pathways involved in leafy head formation of Chinese cabbage (Brassica rapa). PMID:31814983
Integrating long noncoding RNAs and mRNAs expression profiles of response to Plasmodiophora brassicae infection in Pakchoi (Brassica campestris ssp. chinensis Makino). PMID:31805057
Genome-wide analysis of the H3K27me3 epigenome and transcriptome in Brassica rapa. PMID:31800038
Molecular characterization and expression analysis reveal the roles of Cys2/His2 zinc-finger transcription factors during flower development of Brassica rapa subsp. chinensis. PMID:31776846
Single-molecule real-time sequencing facilitates the analysis of transcripts and splice isoforms of anthers in Chinese cabbage (Brassica rapa L. ssp. pekinensis). PMID:31771515
Comparative Analysis of the YABBY Gene Family of Bienertia sinuspersici, a Single-Cell C4 Plant. PMID:31766767
Functional Similarity and Difference among Bra-MIR319 Family in Plant Development. PMID:31766424
Identification, Evolution, and Expression Profiling of Histone Lysine Methylation Moderators in Brassica rapa. PMID:31756989
Evolution of MIR159/319 genes in Brassica campestris and their function in pollen development. PMID:31745746
Genome-Wide Analysis of Basic Helix-Loop-Helix Superfamily Members Reveals Organization and Chilling-Responsive Patterns in Cabbage (Brassica oleracea var. capitata L.). PMID:31717469
Identification and QTL mapping of resistance to Turnip yellows virus (TuYV) in oilseed rape, Brassica napus. PMID:31690991
Genome-wide characterization and evolutionary analysis of heat shock transcription factors (HSFs) to reveal their potential role under abiotic stresses in radish (Raphanus sativus L.). PMID:31651257
Genome wide survey, evolution and expression analysis of PHD finger genes reveal their diverse roles during the development and abiotic stress responses in Brassica rapa L. PMID:31651238
Genome sequences of horticultural plants: past, present, and future. PMID:31645966
Draft genome sequence of cauliflower (Brassica oleracea L. var. botrytis) provides new insights into the C genome in Brassica species. PMID:31645943
The vernalisation regulator FLOWERING LOCUS C is differentially expressed in biennial and annual Brassica napus. PMID:31624282
The histone modification H3 lysine 27 tri-methylation has conserved gene regulatory roles in the triplicated genome of Brassica rapa L. PMID:31622476
Transcriptome-Wide Identification and Characterization of Circular RNAs in Leaves of Chinese Cabbage (Brassica rapa L. ssp. pekinensis) in Response to Calcium Deficiency-Induced Tip-burn. PMID:31601970
Comparative transcript profiling and cytological observation of the newly bred recessive genic male sterility non-heading Chinese cabbage (Brassica rapa ssp. chinensis) line WS24-3A. PMID:31576519
Analysis of small RNA changes in different Brassica napus synthetic allopolyploids. PMID:31565564
The role of FRIGIDA and FLOWERING LOCUS C genes in flowering time of Brassica rapa leafy vegetables. PMID:31554847
Characterization of disease resistance genes in the Brassica napus pangenome reveals significant structural variation. PMID:31553100
The Expanded SWEET Gene Family Following Whole Genome Triplication in Brassica rapa. PMID:31540414
Differential Regulation of Anthocyanins in Green and Purple Turnips Revealed by Combined De Novo Transcriptome and Metabolome Analysis. PMID:31500111
Construction of pseudomolecule sequences of Brassica rapa ssp. pekinensis inbred line CT001 and analysis of spontaneous mutations derived via sexual propagation. PMID:31498838
Identification and application of markers closely linked to the restorer gene (Rfm) in rapeseed (Brassica napus L.). PMID:31481841
Origin and Evolution of Diploid and Allopolyploid Camelina Genomes Were Accompanied by Chromosome Shattering. PMID:31451448
Comparative linkage mapping of diploid, tetraploid, and hexaploid Avena species suggests extensive chromosome rearrangement in ancestral diploids. PMID:31444367
Different copies of SENSITIVITY TO RED LIGHT REDUCED 1 show strong subfunctionalization in Brassica napus. PMID:31438864
Characterization and expression profiles of miRNAs in the triploid hybrids of Brassica napus and Brassica rapa. PMID:31412776
Transcriptional Insight Into Brassica napus Resistance Genes LepR3 and Rlm2-Mediated Defense Response Against the Leptosphaeria maculans Infection. PMID:31333690
Next-generation sequencing-based bulked segregant analysis for QTL mapping in the heterozygous species Brassica rapa. PMID:31317235
Genome-wide identification and functional analysis of oleosin genes in Brassica napus L. PMID:31272381
Transcriptomic response in symptomless roots of clubroot infected kohlrabi (Brassica oleracea var. gongylodes) mirrors resistant plants. PMID:31262271
Several phased siRNA annotation methods can frequently misidentify 24 nucleotide siRNA-dominated PHAS loci. PMID:31245701
Pseudomolecule-level assembly of the Chinese oil tree yellowhorn (Xanthoceras sorbifolium) genome. PMID:31241154
Genomic identification of AP2/ERF transcription factors and functional characterization of two cold resistance-related AP2/ERF genes in celery (Apium graveolens L.). PMID:31236696
Genome wide identification and comparative analysis of glutathione transferases (GST) family genes in Brassica napus. PMID:31235772
Helitron distribution in Brassicaceae and whole Genome Helitron density as a character for distinguishing plant species. PMID:31234777
Comparative transcriptome analysis reveals defense responses against soft rot in Chinese cabbage. PMID:31231526
Genome-wide analysis of spatiotemporal gene expression patterns during floral organ development in Brassica rapa. PMID:31222475
Glucosinolate variability between turnip organs during development. PMID:31170222
Genome-wide analysis of the callose enzyme families of fertile and sterile flower buds of the Chinese cabbage (Brassica rapa L. ssp. pekinensis). PMID:31168951
Cysteine-rich peptides promote interspecific genetic isolation in Arabidopsis. PMID:31147494
Construction of a high-density genetic map and identification of loci controlling purple sepal trait of flower head in Brassica oleracea L. italica. PMID:31146678
Reducing MSH4 copy number prevents meiotic crossovers between non-homologous chromosomes in Brassica napus. PMID:31142748
Clubroot resistance gene Rcr6 in Brassica nigra resides in a genomic region homologous to chromosome A08 in B. rapa. PMID:31142280
Comprehensive Genomic Survey, Characterization and Expression Analysis of the HECT Gene Family in Brassica rapa L. and Brassica oleracea L. PMID:31137879
Efficient genome editing of Brassica campestris based on the CRISPR/Cas9 system. PMID:31129735
Strong temporal dynamics of QTL action on plant growth progression revealed through high-throughput phenotyping in canola. PMID:31125482
Genome-wide identification of GhAAI genes reveals that GhAAI66 triggers a phase transition to induce early flowering. PMID:31106831
Towards the new normal: Transcriptomic convergence and genomic legacy of the two subgenomes of an allopolyploid weed (Capsella bursa-pastoris). PMID:31083657
Identification of Histone H3 (HH3) Genes in Gossypium hirsutum Revealed Diverse Expression During Ovule Development and Stress Responses. PMID:31075950
Genome-Wide Identification, Evolution, and Transcriptional Profiling of PP2C Gene Family in Brassica rapa. PMID:31073524
Identification and expression profiling analysis of NBS-LRR genes involved in Fusarium oxysporum f.sp. conglutinans resistance in cabbage. PMID:31065502
A high-density genetic map developed by specific-locus amplified fragment (SLAF) sequencing and identification of a locus controlling anthocyanin pigmentation in stalk of Zicaitai (Brassica rapa L. ssp. chinensis var. purpurea). PMID:31064320
Investigation of evolutionary and expressional relationships in the function of the leucine-rich repeat receptor-like protein kinase gene family (LRR-RLK) in the radish (Raphanus sativus L.). PMID:31061443
Comprehensive genomic survey, structural classification and expression analysis of C2H2 zinc finger protein gene family in Brassica rapa L. PMID:31059545
Breaking Free: The Genomics of Allopolyploidy-Facilitated Niche Expansion in White Clover. PMID:31023841
Genome-wide identification and analysis of the WUSCHEL-related homeobox (WOX) gene family in allotetraploid Brassica napus reveals changes in WOX genes during polyploidization. PMID:31023229
Genome-Wide Analysis of Glycoside Hydrolase Family 1 β-glucosidase Genes in Brassica rapa and Their Potential Role in Pollen Development. PMID:30987159
Brassica napus Infected with Leptosphaeria maculans. PMID:30979089
Genome-Wide Identification and Characterization of the PERK Gene Family in Gossypium hirsutum Reveals Gene Duplication and Functional Divergence. PMID:30970629
The auxin response factor gene family in allopolyploid Brassica napus. PMID:30958842
Genome-wide selection footprints and deleterious variations in young Asian allotetraploid rapeseed. PMID:30947395
Map-based cloning and characterization of BoCCD4, a gene responsible for white/yellow petal color in B. oleracea. PMID:30909886
Transcriptome reveals the gene expression patterns of sulforaphane metabolism in broccoli florets. PMID:30908527
Genome-wide analysis of long non-coding RNAs unveils the regulatory roles in the heat tolerance of Chinese cabbage (Brassica rapa ssp.chinensis). PMID:30899041
Genome-wide identification and analysis of the EIN3/EIL gene family in allotetraploid Brassica napus reveal its potential advantages during polyploidization. PMID:30898097
Evolutionary and functional analysis of the plant-specific NADPH oxidase gene family in Brassica rapa L. PMID:30891283
Genome-wide identification and characterization of abiotic-stress responsive SOD (superoxide dismutase) gene family in Brassica juncea and B. rapa. PMID:30890148
Genome-wide identification and functional analysis of the cyclic nucleotide-gated channel gene family in Chinese cabbage. PMID:30863698
Angiosperm-Wide and Family-Level Analyses of AP2/ERF Genes Reveal Differential Retention and Sequence Divergence After Whole-Genome Duplication. PMID:30863419
Whole-genome resequencing reveals Brassica napus origin and genetic loci involved in its improvement. PMID:30858362
What makes turnips: anatomy, physiology and transcriptome during early stages of its hypocotyl-tuber development. PMID:30854213
Unbiased subgenome evolution following a recent whole-genome duplication in pear (Pyrus bretschneideri Rehd.). PMID:30854211
Comparative genomics reveals origin of MIR159A-MIR159B paralogy, and complexities of PTGS interaction between miR159 and target GA-MYBs in Brassicaceae. PMID:30840147
Evolutionary history and structure of nuclear matrix constituent proteins, the plant analogues of lamins. PMID:30828723
Characterization of Non-heading Mutation in Heading Chinese Cabbage (Brassica rapa L. ssp. pekinensis). PMID:30809236
Origin and evolution of the octoploid strawberry genome. PMID:30804557
Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants. PMID:30791939
Genome-wide analysis of the Chinese cabbage IQD gene family and the response of BrIQD5 in drought resistance. PMID:30783953
NBS-Encoding Genes in Brassica napus Evolved Rapidly After Allopolyploidization and Co-localize With Known Disease Resistance Loci. PMID:30761170
Transcriptome Analysis of Diurnal Gene Expression in Chinese Cabbage. PMID:30754711
Fine mapping of the major QTL for seed coat color in Brassica rapa var. Yellow Sarson by use of NIL populations and transcriptome sequencing for identification of the candidate genes. PMID:30716096
Genome-wide characterization and expression profiling of SWEET genes in cabbage (Brassica oleracea var. capitata L.) reveal their roles in chilling and clubroot disease responses. PMID:30696401
Chromosome conformation capture resolved near complete genome assembly of broomcorn millet. PMID:30683940
Genome-Wide Identification and Expression Profiling of Sugar Transporter Protein (STP) Family Genes in Cabbage (Brassica oleracea var. capitata L.) Reveals their Involvement in Clubroot Disease Responses. PMID:30669698
Assessing the Response of Small RNA Populations to Allopolyploidy Using Resynthesized Brassica napus Allotetraploids. PMID:30657939
Gene duplication and genetic innovation in cereal genomes. PMID:30651279
Chromosome level comparative analysis of Brassica genomes. PMID:30632049
Genome wide identification of the trihelix transcription factors and overexpression of Gh_A05G2067 (GT-2), a novel gene contributing to increased drought and salt stresses tolerance in cotton. PMID:30629305
Mapping of a novel clubroot resistance QTL using ddRAD-seq in Chinese cabbage (Brassica rapa L.). PMID:30621588
Genome-wide analysis and stress-responsive expression of CCCH zinc finger family genes in Brassica rapa. PMID:30587139
A tuber mustard AP2/ERF transcription factor gene, BjABR1, functioning in abscisic acid and abiotic stress responses, and evolutionary trajectory of the ABR1 homologous genes in Brassica species. PMID:30581669
BrLAS, a GRAS Transcription Factor From Brassica rapa, Is Involved in Drought Stress Tolerance in Transgenic Arabidopsis. PMID:30574156
Translating Flowering Time From Arabidopsis thaliana to Brassicaceae and Asteraceae Crop Species. PMID:30558374
BrRLP48, Encoding a Receptor-Like Protein, Involved in Downy Mildew Resistance in Brassica rapa. PMID:30532761
Integrated physiologic, genomic and transcriptomic strategies involving the adaptation of allotetraploid rapeseed to nitrogen limitation. PMID:30509163
Transcriptional regulation of anthocyanin biosynthesis in a high-anthocyanin resynthesized Brassica napus cultivar. PMID:30505808
Reconstituting the genome of a young allopolyploid crop, Brassica napus, with its related species. PMID:30467941
Genome-Wide Identification of Flowering-Time Genes in Brassica Species and Reveals a Correlation between Selective Pressure and Expression Patterns of Vernalization-Pathway Genes in Brassica napus. PMID:30453667
Genome-wide analysis reveals the evolution and structural features of WRINKLED1 in plants. PMID:30446819
Developmental Stage and Shape of Embryo Determine the Efficacy of Embryo Rescue in Introgressing Orange/Yellow Color and Anthocyanin Genes of Brassica Species. PMID:30428562
Genome-wide Identification, Classification, and Expression Pattern of Homeobox Gene Family in Brassica rapa under Various Stresses. PMID:30389998
Species-Wide Variation in Shoot Nitrate Concentration, and Genetic Loci Controlling Nitrate, Phosphorus and Potassium Accumulation in Brassica napus L. PMID:30386356
QTL Landscape for Oil Content in Brassica juncea: Analysis in Multiple Bi-Parental Populations in High and "0" Erucic Background. PMID:30386353
Recursive Paleohexaploidization Shaped the Durian Genome. PMID:30385647
Mapping of the male sterile mutant gene ftms in Brassica rapa L. ssp. pekinensis via BSR-Seq combined with whole-genome resequencing. PMID:30382313
Genome-Wide Identification and Characterization of Pectin Methylesterase Inhibitor Genes in Brassica oleracea. PMID:30373125
Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species. PMID:30285607
Comparative analysis of the genetic variability within the Q-type C2H2 zinc-finger transcription factors in the economically important cabbage, canola and Chinese cabbage genomes. PMID:30258345
Genome-wide identification and characterization of CONSTANS-like gene family in radish (Raphanus sativus). PMID:30248137
Microsynteny analysis to understand evolution and impact of polyploidization on MIR319 family within Brassicaceae. PMID:30242472
Exploring transcription factors reveals crucial members and regulatory networks involved in different abiotic stresses in Brassica napus L. PMID:30231862
Evolution and Expression Divergence of E2 Gene Family under Multiple Abiotic and Phytohormones Stresses in Brassica rapa. PMID:30225257
A Robust Methodology for Assessing Differential Homeolog Contributions to the Transcriptomes of Allopolyploids. PMID:30213855
A High-Density Genetic Map of an Allohexaploid Brassica Doubled Haploid Population Reveals Quantitative Trait Loci for Pollen Viability and Fertility. PMID:30210508
Variability in eukaryotic initiation factor iso4E in Brassica rapa influences interactions with the viral protein linked to the genome of Turnip mosaic virus. PMID:30206242
Genome-Wide DNA Methylation Comparison between Brassica napus Genic Male Sterile Line and Restorer Line. PMID:30201884
The divergence and positive selection of the plant-specific BURP-containing protein family. PMID:30151141
GinMicrosatDb: a genome-wide microsatellite markers database for sesame (Sesamum indicum L.). PMID:30150867
Improved Brassica rapa reference genome by single-molecule sequencing and chromosome conformation capture technologies. PMID:30131865
Genome re-sequencing, SNP analysis, and genetic mapping of the parental lines of a commercial F1 hybrid cultivar of Chinese cabbage. PMID:30100805
Homoeolog expression bias and expression level dominance in resynthesized allopolyploid Brassica napus. PMID:30081834
Genome-Wide Identification and Analysis of Polygalacturonase Genes in Solanum lycopersicum. PMID:30081560
Transcriptional and translational responses of rapeseed leaves to red and blue lights at the rosette stage. PMID:30070082
Genome-Wide Characterization and Analysis of Metallothionein Family Genes That Function in Metal Stress Tolerance in Brassica napus L. PMID:30049941
Mining of Brassica-Specific Genes (BSGs) and Their Induction in Different Developmental Stages and under Plasmodiophora brassicae Stress in Brassica rapa. PMID:30012965
BrFLC5: a weak regulator of flowering time in Brassica rapa. PMID:30008108
Ectopic expression of a Brassica rapa AINTEGUMENTA gene (BrANT-1) increases organ size and stomatal density in Arabidopsis. PMID:30002453
Genome-Wide Identification, Classification, and Expression Divergence of Glutathione-Transferase Family in Brassica rapa under Multiple Hormone Treatments. PMID:29992155
Spatio-temporal expression dynamics differ between homologues of flowering time genes in the allopolyploid Brassica napus. PMID:29989238
Genome-wide characterization of DNA methylation, small RNA expression, and histone H3 lysine nine di-methylation in Brassica rapa L. PMID:29982343
Defence signalling marker gene responses to hormonal elicitation differ between roots and shoots. PMID:29977487
Genomics-Assisted Identification and Characterization of the Genetic Variants Underlying Differential Nitrogen Use Efficiencies in Allotetraploid Rapeseed Genotypes. PMID:29967053
SUPPRESSOR OF OVEREXPRESSION OF CONSTANS1 influences flowering time, lateral branching, oil quality, and seed yield in Brassica juncea cv. Varuna. PMID:29943206
Detecting de Novo Homoeologous Recombination Events in Cultivated Brassica napus Using a Genome-Wide SNP Array. PMID:29907649
Overexpression of BraLTP2, a Lipid Transfer Protein of Brassica napus, Results in Increased Trichome Density and Altered Concentration of Secondary Metabolites. PMID:29895724
Identification and Mapping of the Clubroot Resistance Gene CRd in Chinese Cabbage (Brassica rapa ssp. pekinensis). PMID:29868100
Comparative transcriptomics reveals shared gene expression changes during independent evolutionary origins of stem and hypocotyl/root tubers in Brassica (Brassicaceae). PMID:29856865
Transcriptome Analysis in Chinese Cabbage (Brassica rapa ssp. pekinensis) Provides the Role of Glucosinolate Metabolism in Response to Drought Stress. PMID:29762546
Highly preserved roles of Brassica MIR172 in polyploid Brassicas: ectopic expression of variants of Brassica MIR172 accelerates floral transition. PMID:29752548
The DNA Methylome and Association of Differentially Methylated Regions with Differential Gene Expression during Heat Stress in Brassica rapa. PMID:29747401
Pinning down ploidy in paleopolyploid plants. PMID:29745846
Re-exploration of U's Triangle Brassica Species Based on Chloroplast Genomes and 45S nrDNA Sequences. PMID:29743507
Comprehensive analyses of the BES1 gene family in Brassica napus and examination of their evolutionary pattern in representative species. PMID:29743014
Finding invisible quantitative trait loci with missing data. PMID:29729219
Homoeolog expression bias in allopolyploid oleaginous marine diatom Fistulifera solaris. PMID:29728068
Genome-Wide Identification, Molecular Evolution, and Expression Profiling Analysis of Pectin Methylesterase Inhibitor Genes in Brassica campestris ssp. chinensis. PMID:29724020
Genome-Wide Identification and Expression Analysis of the Cation Diffusion Facilitator Gene Family in Turnip Under Diverse Metal Ion Stresses. PMID:29670641
Genotyping of Plasmodiophora brassicae reveals the presence of distinct populations. PMID:29661147
Computational Characterization of ncRNA Fragments in Various Tissues of the Brassica rapa Plant. PMID:29657288
FANCM Limits Meiotic Crossovers in Brassica Crops. PMID:29628933
Patterns of Population Variation in Two Paleopolyploid Eudicot Lineages Suggest That Dosage-Based Selection on Homeologs Is Long-Lived. PMID:29617811
An Updated Functional Annotation of Protein-Coding Genes in the Cucumber Genome. PMID:29599790
Dissecting the complex regulation of lodging resistance in Brassica napus. PMID:29568228
Genome-wide identification, putative functionality and interactions between lncRNAs and miRNAs in Brassica species. PMID:29563515
Isolation and Functional Characterization of a Floral Repressor, BcMAF1, From Pak-choi (Brassica rapa ssp. Chinensis). PMID:29559991
Genome Wide Identification and Expression Profiling of SWEET Genes Family Reveals Its Role During Plasmodiophora brassicae-Induced Formation of Clubroot in Brassica rapa. PMID:29541081
Genome-Wide Identification and Analysis of TCP Transcription Factors Involved in the Formation of Leafy Head in Chinese Cabbage. PMID:29538304
Sequence and functional characterization of MIRNA164 promoters from Brassica shows copy number dependent regulatory diversification among homeologs. PMID:29532337
Phytochrome B regulates resource allocation in Brassica rapa. PMID:29514292
The genome sequence of 'Kurodagosun', a major carrot variety in Japan and China, reveals insights into biological research and carrot breeding. PMID:29497811
Evolution of genes associated with gynoecium patterning and fruit development in Solanaceae. PMID:29471367
A molecular framework controlling style morphology in Brassicaceae. PMID:29440299
The Roles of Mitochondrion in Intergenomic Gene Transfer in Plants: A Source and a Pool. PMID:29439501
Duplicated RGS (Regulator of G-protein signaling) proteins exhibit conserved biochemical but differential transcriptional regulation of heterotrimeric G-protein signaling in Brassica species. PMID:29391473
Comparative genomic and transcriptomic analyses of Family-1 UDP glycosyltransferase in three Brassica species and Arabidopsis indicates stress-responsive regulation. PMID:29382843
Brassicaceae Mustards: Traditional and Agronomic Uses in Australia and New Zealand. PMID:29361740
Mapping and Identifying a Candidate Gene (Bnmfs) for Female-Male Sterility through Whole-Genome Resequencing and RNA-Seq in Rapeseed (Brassica napus L.). PMID:29326731
Genome-wide analysis and expression profiles of glyoxalase gene families in Chinese cabbage (Brassica rapa L). PMID:29324881
Genome-wide comparative analysis of papain-like cysteine protease family genes in castor bean and physic nut. PMID:29321580
Coupling Seq-BSA and RNA-Seq Analyses Reveal the Molecular Pathway and Genes Associated with Heading Type in Chinese Cabbage. PMID:29312432
BnDGAT1s Function Similarly in Oil Deposition and Are Expressed with Uniform Patterns in Tissues of Brassica napus. PMID:29312429
misMM: An Integrated Pipeline for Misassembly Detection Using Genotyping-by-Sequencing and Its Validation with BAC End Library Sequences and Gene Synteny. PMID:29307138
Divergent evolutionary patterns of the MAPK cascade genes in Brassica rapa and plant phylogenetics. PMID:29285397
Elucidating the major hidden genomic components of the A, C, and AC genomes and their influence on Brassica evolution. PMID:29269833
Genome-Wide Identification, Evolutionary and Expression Analyses of the GALACTINOL SYNTHASE Gene Family in Rapeseed and Tobacco. PMID:29261107
Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.). PMID:29258434
Identification and fine mapping of a stay-green gene (Brnye1) in pakchoi (Brassica campestris L. ssp. chinensis). PMID:29209732
Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence. PMID:29202864
Parallel loss of introns in the ABCB1 gene in angiosperms. PMID:29202710
Identification of Candidate Genes for Calcium and Magnesium Accumulation in Brassica napus L. by Association Genetics. PMID:29187860
Patterns and Consequences of Subgenome Differentiation Provide Insights into the Nature of Paleopolyploidy in Plants. PMID:29180596
Insights into the species-specific metabolic engineering of glucosinolates in radish (Raphanus sativus L.) based on comparative genomic analysis. PMID:29167500
Mannans and endo-β-mannanase transcripts are located in different seed compartments during Brassicaceae germination. PMID:29164367
Current Status and Challenges in Identifying Disease Resistance Genes in Brassica napus. PMID:29163558
Genome-wide analysis of the auxin/indoleacetic acid (Aux/IAA) gene family in allotetraploid rapeseed (Brassica napus L.). PMID:29145811
Transcriptomic analysis of the regulation of stalk development in flowering Chinese cabbage (Brassica campestris) by RNA sequencing. PMID:29138433
Expression profiles of BrMYB transcription factors related to glucosinolate biosynthesis and stress response in eight subspecies of Brassica rapa. PMID:29123974
Pectin methylesterase inhibitor (PMEI) family can be related to male sterility in Chinese cabbage (Brassica rapa ssp. pekinensis). PMID:29119365
Genome-Wide Identification and Expression, Protein-Protein Interaction and Evolutionary Analysis of the Seed Plant-Specific BIG GRAIN and BIG GRAIN LIKE Gene Family. PMID:29118774
Genome-wide identification and expression analysis of calmodulin-like (CML) genes in Chinese cabbage (Brassica rapa L. ssp. pekinensis). PMID:29096605
Flowering Time Gene Variation in Brassica Species Shows Evolutionary Principles. PMID:29089948
Evolution of the Aux/IAA Gene Family in Hexaploid Wheat. PMID:29085968
Genome-wide analysis of wheat calcium ATPases and potential role of selected ACAs and ECAs in calcium stress. PMID:29078753
Affinity proteomics reveals extensive phosphorylation of the Brassica chromosome axis protein ASY1 and a network of associated proteins at prophase I of meiosis. PMID:29078019
An Overlooked Paleotetraploidization in Cucurbitaceae. PMID:29029269
Synteny analysis of genes and distribution of loci controlling oil content and fatty acid profile based on QTL alignment map in Brassica napus. PMID:29025408
A genome-wide survey with different rapeseed ecotypes uncovers footprints of domestication and breeding. PMID:28992309
Genome-Wide Identification and Characterization of BrrTCP Transcription Factors in Brassica rapa ssp. rapa. PMID:28955373
Evolutionary history and functional divergence of the cytochrome P450 gene superfamily between Arabidopsis thaliana and Brassica species uncover effects of whole genome and tandem duplications. PMID:28923019
Understanding of MYB Transcription Factors Involved in Glucosinolate Biosynthesis in Brassicaceae. PMID:28906468
Development of Brassica oleracea-nigra monosomic alien addition lines: genotypic, cytological and morphological analyses. PMID:28884205
Characteristics of Color Development in Seeds of Brown- and Yellow-Seeded Heading Chinese Cabbage and Molecular Analysis of Brsc, the Candidate Gene Controlling Seed Coat Color. PMID:28855913
Temporal network analysis identifies early physiological and transcriptomic indicators of mild drought in Brassica rapa. PMID:28826479
Genome-Wide Identification and Characterization of the Aquaporin Gene Family and Transcriptional Responses to Boron Deficiency in Brassica napus. PMID:28824672
Enriching Glucoraphanin in Brassica rapa Through Replacement of BrAOP2.2/BrAOP2.3 with Non-functional Genes. PMID:28824667
Comparison of transcriptome profiles by Fusarium oxysporum inoculation between Fusarium yellows resistant and susceptible lines in Brassica rapa L. PMID:28819684
Genome-Wide Association Study Reveals Candidate Genes for Control of Plant Height, Branch Initiation Height and Branch Number in Rapeseed (Brassica napus L.). PMID:28769955
Cadmium phytoremediation potential of turnip compared with three common high Cd-accumulating plants. PMID:28752309
Papain-like cysteine protease encoding genes in rubber (Hevea brasiliensis): comparative genomics, phylogenetic, and transcriptional profiling analysis. PMID:28752264
Drought-Tolerant Brassica rapa Shows Rapid Expression of Gene Networks for General Stress Responses and Programmed Cell Death Under Simulated Drought Stress. PMID:28751801
Genome-wide Analysis and Expression Divergence of the Trihelix family in Brassica Rapa: Insight into the Evolutionary Patterns in Plants. PMID:28743951
Divergent Evolutionary Patterns of NAC Transcription Factors Are Associated with Diversification and Gene Duplications in Angiosperm. PMID:28713414
Genetic changes in a novel breeding population of Brassica napus synthesized from hundreds of crosses between B. rapa and B. carinata. PMID:28703467
Plant-RRBS, a bisulfite and next-generation sequencing-based methylome profiling method enriching for coverage of cytosine positions. PMID:28683715
RapaNet: A Web Tool for the Co-Expression Analysis of Brassica rapa Genes. PMID:28680265
Genotyping-by-sequencing reveals three QTL for clubroot resistance to six pathotypes of Plasmodiophora brassicae in Brassica rapa. PMID:28674416
Genome-wide analysis of UDP-glycosyltransferase super family in Brassica rapa and Brassica oleracea reveals its evolutionary history and functional characterization. PMID:28645261
A multiplex PCR for rapid identification of Brassica species in the triangle of U. PMID:28638437
Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. PMID:28630437
Integrated analysis of leaf morphological and color traits in different populations of Chinese cabbage (Brassica rapa ssp. pekinensis). PMID:28577084
Using RNA-Seq for Genomic Scaffold Placement, Correcting Assemblies, and Genetic Map Creation in a Common Brassica rapa Mapping Population. PMID:28546385
Whole-Genome Identification and Expression Pattern of the Vicinal Oxygen Chelate Family in Rapeseed (Brassica napus L.). PMID:28536594
Amplifying recombination genome-wide and reshaping crossover landscapes in Brassicas. PMID:28493942
Investigation of the Genetic Diversity and Quantitative Trait Loci Accounting for Important Agronomic and Seed Quality Traits in Brassica carinata. PMID:28484482
Single-Copy Genes as Molecular Markers for Phylogenomic Studies in Seed Plants. PMID:28460034
Transcriptome Analysis of a Female-sterile Mutant (fsm) in Chinese Cabbage (Brassica campestris ssp. pekinensis). PMID:28443127
Genomic, Molecular Evolution, and Expression Analysis of Genes Encoding Putative Classical AGPs, Lysine-Rich AGPs, and AG Peptides in Brassica rapa. PMID:28424711
New Insights on Leucine-Rich Repeats Receptor-Like Kinase Orthologous Relationships in Angiosperms. PMID:28424707
A genome-wide SNP-based genetic map and QTL mapping for agronomic traits in Chinese cabbage. PMID:28418033
Assembly and comparison of two closely related Brassica napus genomes. PMID:28403535
Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce. PMID:28401891
Genome-Wide Identification, Evolution, and Expression Analysis of the ATP-Binding Cassette Transporter Gene Family in Brassica rapa. PMID:28367152
Population Structure and Phylogenetic Relationships in a Diverse Panel of Brassica rapa L. PMID:28348571
Targeted deep sequencing of flowering regulators in Brassica napus reveals extensive copy number variation. PMID:28291231
Genetics and fine mapping of a purple leaf gene, BoPr, in ornamental kale (Brassica oleracea L. var. acephala). PMID:28288583
Genetic Transformation and Genomic Resources for Next-Generation Precise Genome Engineering in Vegetable Crops. PMID:28275380
Identification of different cytoplasms based on newly developed mitotype-specific markers for marker-assisted selection breeding in Brassica napus L. PMID:28265748
Fine-Mapping and Analysis of Cgl1, a Gene Conferring Glossy Trait in Cabbage (Brassica oleracea L. var. capitata). PMID:28265282
Genome-Wide Association and Transcriptome Analyses Reveal Candidate Genes Underlying Yield-determining Traits in Brassica napus. PMID:28261256
Comprehensive Analysis of the CDPK-SnRK Superfamily Genes in Chinese Cabbage and Its Evolutionary Implications in Plants. PMID:28239387
De novo Transcriptome Assembly of Chinese Kale and Global Expression Analysis of Genes Involved in Glucosinolate Metabolism in Multiple Tissues. PMID:28228764
A user guide to the Brassica 60K Illumina Infinium™ SNP genotyping array. PMID:28220206
A Phylogenetic Analysis of Chloroplast Genomes Elucidates the Relationships of the Six Economically Important Brassica Species Comprising the Triangle of U. PMID:28210266
Genome-wide analysis of auxin transport genes identifies the hormone responsive patterns associated with leafy head formation in Chinese cabbage. PMID:28169368
De novo transcriptome assemblies of four accessions of the metal hyperaccumulator plant Noccaea caerulescens. PMID:28140388
Genome-wide expression profiling of aquaporin genes confer responses to abiotic and biotic stresses in Brassica rapa. PMID:28122509
Brassica juncea Lines with Substituted Chimeric GFP-CENH3 Give Haploid and Aneuploid Progenies on Crossing with Other Lines. PMID:28111587
Genome-wide identification, evolution and expression analysis of RING finger protein genes in Brassica rapa. PMID:28094809
The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry. PMID:28094805
Brassica napus DS-3, encoding a DELLA protein, negatively regulates stem elongation through gibberellin signaling pathway. PMID:28093630
Identification of SSR markers closely linked to the yellow seed coat color gene in heading Chinese cabbage (Brassica rapa L. ssp. pekinensis). PMID:28069590
Polyploidy and the relationship between leaf structure and function: implications for correlated evolution of anatomy, morphology, and physiology in Brassica. PMID:28056801
Atypical Protein Phosphatase 2A Gene Families Do Not Expand via Paleopolyploidization. PMID:28034953
Plastoquinone and Ubiquinone in Plants: Biosynthesis, Physiological Function and Metabolic Engineering. PMID:28018418
Genome-Wide Identification, Localization, and Expression Analysis of Proanthocyanidin-Associated Genes in Brassica. PMID:28018375
Microspore Induced Doubled Haploids Production from Ethyl Methanesulfonate (EMS) Soaked Flower Buds Is an Efficient Strategy for Mutagenesis in Chinese Cabbage. PMID:28018368
The tandem repeated organization of NB-LRR genes in the clubroot-resistant CRb locus in Brassica rapa L. PMID:28013378
Genome-Wide Survey of Flavonoid Biosynthesis Genes and Gene Expression Analysis between Black- and Yellow-Seeded Brassica napus. PMID:27999578
Genome resequencing and comparative variome analysis in a Brassica rapa and Brassica oleracea collection. PMID:27996963
Single R Gene Introgression Lines for Accurate Dissection of the Brassica - Leptosphaeria Pathosystem. PMID:27965684
Global DNA methylation variations after short-term heat shock treatment in cultured microspores of Brassica napus cv. Topas. PMID:27917903
Fire and Brimstone: Molecular Interactions between Sulfur and Glucosinolate Biosynthesis in Model and Crop Brassicaceae. PMID:27917185
Over-expression of miR158 causes pollen abortion in Brassica campestris ssp. chinensis. PMID:27909970
Introgressing Subgenome Components from Brassica rapa and B. carinata to B. juncea for Broadening Its Genetic Base and Exploring Intersubgenomic Heterosis. PMID:27909440
Allelism analysis of BrRfp locus in different restorer lines and map-based cloning of a fertility restorer gene, BrRfp1, for pol CMS in Chinese cabbage (Brassica rapa L.). PMID:27896366
Transcriptome-Wide Identification and Expression Analysis of the NAC Gene Family in Tea Plant [Camellia sinensis (L.) O. Kuntze]. PMID:27855193
The pangenome of an agronomically important crop plant Brassica oleracea. PMID:27834372
Genome-wide Association Study Identifies New Loci for Resistance to Leptosphaeria maculans in Canola. PMID:27822217
The Cardamine hirsuta genome offers insight into the evolution of morphological diversity. PMID:27797353
Integration of omics approaches to understand oil/protein content during seed development in oilseed crops. PMID:27796489
Comparative genomic analysis of the compound Brassica napus Rf locus. PMID:27782804
A Genome-Wide Association Study Reveals New Loci for Resistance to Clubroot Disease in Brassica napus. PMID:27746804
Genetic dissection of seed weight by QTL analysis and detection of allelic variation in Indian and east European gene pool lines of Brassica juncea. PMID:27744489
Genome-Wide Analysis and Expression Profiling of the SUC and SWEET Gene Families of Sucrose Transporters in Oilseed Rape (Brassica napus L.). PMID:27733861
Genome-Wide Gene/Genome Dosage Imbalance Regulates Gene Expressions in Synthetic Brassica napus and Derivatives (AC, AAC, CCA, CCAA). PMID:27721820
Map-based cloning of the dominant genic male sterile Ms-cd1 gene in cabbage (Brassica oleracea). PMID:27704179
Genome-Wide Characterization of the MADS-Box Gene Family in Radish (Raphanus sativus L.) and Assessment of Its Roles in Flowering and Floral Organogenesis. PMID:27703461
Extraction of the Constituent Subgenomes of the Natural Allopolyploid Rapeseed (Brassica napus L.). PMID:27638420
The genome sequence of allopolyploid Brassica juncea and analysis of differential homoeolog gene expression influencing selection. PMID:27595476
Characterization of the cinnamoyl-CoA reductase (CCR) gene family in Populus tomentosa reveals the enzymatic active sites and evolution of CCR. PMID:27580618
Origination, Expansion, Evolutionary Trajectory, and Expression Bias of AP2/ERF Superfamily in Brassica napus. PMID:27570529
Altered Transcription and Neofunctionalization of Duplicated Genes Rescue the Harmful Effects of a Chimeric Gene in Brassica napus. PMID:27559024
Multi-environment QTL studies suggest a role for cysteine-rich protein kinase genes in quantitative resistance to blackleg disease in Brassica napus. PMID:27553246
The Gene Encoding Dihydroflavonol 4-Reductase Is a Candidate for the anthocyaninless Locus of Rapid Cycling Brassica rapa (Fast Plants Type). PMID:27548675
Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea. PMID:27526322
Cytogenetic Diversity of Simple Sequences Repeats in Morphotypes of Brassica rapa ssp. chinensis. PMID:27507974
Fine mapping of a dominant gene conferring chlorophyll-deficiency in Brassica napus. PMID:27506952
Multigenic Control of Pod Shattering Resistance in Chinese Rapeseed Germplasm Revealed by Genome-Wide Association and Linkage Analyses. PMID:27493651
A Genome-Wide Analysis Reveals Stress and Hormone Responsive Patterns of TIFY Family Genes in Brassica rapa. PMID:27446164
Comparative Transcriptome Analysis Reveals Heat-Responsive Genes in Chinese Cabbage (Brassica rapa ssp. chinensis). PMID:27443222
Identification of loci associated with embryo yield in microspore culture of Brassica rapa by segregation distortion analysis. PMID:27438134
Genome-Wide Analysis of the bZIP Gene Family Identifies Two ABI5-Like bZIP Transcription Factors, BrABI5a and BrABI5b, as Positive Modulators of ABA Signalling in Chinese Cabbage. PMID:27414644
The epidermis coordinates auxin-induced stem growth in response to shade. PMID:27401556
Genome Wide Identification and Functional Prediction of Long Non-Coding RNAs Responsive to Sclerotinia sclerotiorum Infection in Brassica napus. PMID:27388760
A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid genome. PMID:27364915
Identification of a novel MLPK homologous gene MLPKn1 and its expression analysis in Brassica oleracea. PMID:27342989
High-throughput development of simple sequence repeat markers for genetic diversity research in Crambe abyssinica. PMID:27317011
Genome-Wide Identification and Characterization of bZIP Transcription Factors in Brassica oleracea under Cold Stress. PMID:27314020
Conservation and Expression Patterns Divergence of Ascorbic Acid d-mannose/l-galactose Pathway Genes in Brassica rapa. PMID:27313597
Reduction of GIGANTEA expression in transgenic Brassica rapa enhances salt tolerance. PMID:27295265
A Collection of Conserved Noncoding Sequences to Study Gene Regulation in Flowering Plants. PMID:27261064
Lack of GLYCOLATE OXIDASE1, but Not GLYCOLATE OXIDASE2, Attenuates the Photorespiratory Phenotype of CATALASE2-Deficient Arabidopsis. PMID:27225899
Development of IP and SCAR markers linked to the yellow seed color gene in Brassica juncea L. PMID:27162489
Fine mapping of a major locus controlling plant height using a high-density single-nucleotide polymorphism map in Brassica napus. PMID:27147069
Comprehensive analysis of the polygalacturonase and pectin methylesterase genes in Brassica rapa shed light on their different evolutionary patterns. PMID:27112365
Small RNA changes in synthetic Brassica napus. PMID:27107747
Temperature expression patterns of genes and their coexpression with LncRNAs revealed by RNA-Seq in non-heading Chinese cabbage. PMID:27103267
Identification of Genome-Wide Variants and Discovery of Variants Associated with Brassica rapa Clubroot Resistance Gene Rcr1 through Bulked Segregant RNA Sequencing. PMID:27078023
Rapid genome-wide evolution in Brassica rapa populations following drought revealed by sequencing of ancestral and descendant gene pools. PMID:27072809
Genome-wide identification, structural analysis and new insights into late embryogenesis abundant (LEA) gene family formation pattern in Brassica napus. PMID:27072743
Agronomic and Seed Quality Traits Dissected by Genome-Wide Association Mapping in Brassica napus. PMID:27066036
Genome-Wide Analysis and Characterization of Aux/IAA Family Genes in Brassica rapa. PMID:27049520
Comparative Leaves Transcriptome Analysis Emphasizing on Accumulation of Anthocyanins in Brassica: Molecular Regulation and Potential Interaction with Photosynthesis. PMID:27047501
Elucidating the triplicated ancestral genome structure of radish based on chromosome-level comparison with the Brassica genomes. PMID:27038817
The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp. PMID:27036196
Sequencing Crop Genomes: A Gateway to Improve Tropical Agriculture. PMID:27019684
Quantitative trait loci analysis and genome-wide comparison for silique related traits in Brassica napus. PMID:27000872
Evaluating and Characterizing Ancient Whole-Genome Duplications in Plants with Gene Count Data. PMID:26988251
Concentrations of thiocyanate and goitrin in human plasma, their precursor concentrations in brassica vegetables, and associated potential risk for hypothyroidism. PMID:26946249
Tolerant and Susceptible Sesame Genotypes Reveal Waterlogging Stress Response Patterns. PMID:26934874
Evolution of plant genome architecture. PMID:26926526
Molecular-cytogenetic characterization of C-genome chromosome substitution lines in Brassica juncea (L.) Czern and Coss. PMID:26913722
Genetic Variation and Divergence of Genes Involved in Leaf Adaxial-Abaxial Polarity Establishment in Brassica rapa. PMID:26904064
Transcriptomic Analysis for Different Sex Types of Ricinus communis L. during Development from Apical Buds to Inflorescences by Digital Gene Expression Profiling. PMID:26904031
Genome-wide identification and homeolog-specific expression analysis of the SnRK2 genes in Brassica napus guard cells. PMID:26898295
Genetic dissection of plant architecture and yield-related traits in Brassica napus. PMID:26880301
Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). PMID:26870051
Creating Order from Chaos: Epigenome Dynamics in Plants with Complex Genomes. PMID:26869701
Class-Specific Evolution and Transcriptional Differentiation of 14-3-3 Family Members in Mesohexaploid Brassica rapa. PMID:26858736
Physiological Characterization and Comparative Transcriptome Analysis of a Slow-Growing Reduced-Thylakoid Mutant of Chinese Cabbage (Brassica campestris ssp. pekinensis). PMID:26858733
Transcriptome Profiling of Resistance to Fusarium oxysporum f. sp. conglutinans in Cabbage (Brassica oleracea) Roots. PMID:26849436
NABIC: A New Access Portal to Search, Visualize, and Share Agricultural Genomics Data. PMID:26848255
Genome-wide identification, classification, and analysis of NADP-ME family members from 12 crucifer species. PMID:26839002
LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana. PMID:26829982
Functional analysis of three BrMYB28 transcription factors controlling the biosynthesis of glucosinolates in Brassica rapa. PMID:26820138
Identification of Polymorphisms Associated with Drought Adaptation QTL in Brassica napus by Resequencing. PMID:26801646
Identification, duplication, evolution and expression analyses of caleosins in Brassica plants and Arabidopsis subspecies. PMID:26786939
Landscape and evolutionary dynamics of terminal repeat retrotransposons in miniature in plant genomes. PMID:26781660
Evolutionary Dynamics of the Leucine-Rich Repeat Receptor-Like Kinase (LRR-RLK) Subfamily in Angiosperms. PMID:26773008
Hairy Canola (Brasssica napus) re-visited: Down-regulating TTG1 in an AtGL3-enhanced hairy leaf background improves growth, leaf trichome coverage, and metabolite gene expression diversity. PMID:26739276
Dosage Sensitivity of RPL9 and Concerted Evolution of Ribosomal Protein Genes in Plants. PMID:26734020
Evaluation of Linkage Disequilibrium Pattern and Association Study on Seed Oil Content in Brassica napus Using ddRAD Sequencing. PMID:26730738
The evolutionary landscape of PRC1 core components in green lineage. PMID:26729480
Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes. PMID:26728943
Interspecific hybridization, polyploidization, and backcross of Brassica oleracea var. alboglabra with B. rapa var. purpurea morphologically recapitulate the evolution of Brassica vegetables. PMID:26727246
Retention, Molecular Evolution, and Expression Divergence of the Auxin/Indole Acetic Acid and Auxin Response Factor Gene Families in Brassica Rapa Shed Light on Their Evolution Patterns in Plants. PMID:26721260
Understanding Brassicaceae evolution through ancestral genome reconstruction. PMID:26653025
Species-wide genome sequence and nucleotide polymorphisms from the model allopolyploid plant Brassica napus. PMID:26647166
Variation in the flowering time orthologs BrFLC and BrSOC1 in a natural population of Brassica rapa. PMID:26644966
Genome-Wide Identification and Analysis of the VQ Motif-Containing Protein Family in Chinese Cabbage (Brassica rapa L. ssp. Pekinensis). PMID:26633387
Genotyping-by-sequencing map permits identification of clubroot resistance QTLs and revision of the reference genome assembly in cabbage (Brassica oleracea L.). PMID:26622061
The power of single molecule real-time sequencing technology in the de novo assembly of a eukaryotic genome. PMID:26616024
Diversification and evolution of the SDG gene family in Brassica rapa after the whole genome triplication. PMID:26596461
Brassica database (BRAD) version 2.0: integrating and mining Brassicaceae species genomic resources. PMID:26589635
Genomic and Post-Translational Modification Analysis of Leucine-Rich-Repeat Receptor-Like Kinases in Brassica rapa. PMID:26588465
Genome-specific differential gene expressions in resynthesized Brassica allotetraploids from pair-wise crosses of three cultivated diploids revealed by RNA-seq. PMID:26583027
The miRNAs and their regulatory networks responsible for pollen abortion in Ogura-CMS Chinese cabbage revealed by high-throughput sequencing of miRNAs, degradomes, and transcriptomes. PMID:26557132
Molecular evolution, characterization, and expression analysis of SnRK2 gene family in Pak-choi (Brassica rapa ssp. chinensis). PMID:26557127
Genome-wide analysis and expression patterns of ZF-HD transcription factors under different developmental tissues and abiotic stresses in Chinese cabbage. PMID:26546019
Impacts of Whole-Genome Triplication on MIRNA Evolution in Brassica rapa. PMID:26527651
Identification of environmentally stable QTL for resistance against Leptosphaeria maculans in oilseed rape (Brassica napus). PMID:26518572
Genetic variation and inheritance of phytosterol and oil content in a doubled haploid population derived from the winter oilseed rape Sansibar × Oase cross. PMID:26518571
A Systems Genetics Approach Identifies Gene Regulatory Networks Associated with Fatty Acid Composition in Brassica rapa Seed. PMID:26518343
Dissecting the complex molecular evolution and expression of polygalacturonase gene family in Brassica rapa ssp. chinensis. PMID:26506823
Characterization and Development of EST-SSRs by Deep Transcriptome Sequencing in Chinese Cabbage (Brassica rapa L. ssp. pekinensis). PMID:26504770
Genome triplication drove the diversification of Brassica plants. PMID:26504539
Genome-wide DNA methylation profiling by modified reduced representation bisulfite sequencing in Brassica rapa suggests that epigenetic modifications play a key role in polyploid genome evolution. PMID:26500672
Identification of dopamine receptors across the extant avian family tree and analysis with other clades uncovers a polyploid expansion among vertebrates. PMID:26500483
BnaC9.SMG7b Functions as a Positive Regulator of the Number of Seeds per Silique in Brassica napus by Regulating the Formation of Functional Female Gametophytes. PMID:26494121
Overexpression of Three Glucosinolate Biosynthesis Genes in Brassica napus Identifies Enhanced Resistance to Sclerotinia sclerotiorum and Botrytis cinerea. PMID:26465156
Transcriptome Analysis of Interspecific Hybrid between Brassica napus and B. rapa Reveals Heterosis for Oil Rape Improvement. PMID:26448924
Comparative genomic analysis of duplicated homoeologous regions involved in the resistance of Brassica napus to stem canker. PMID:26442081
Genome-wide gene expression perturbation induced by loss of C2 chromosome in allotetraploid Brassica napus L. PMID:26442076
Generation and characterization of Brassica rapa ssp. pekinensis - B. oleracea var. capitata monosomic and disomic alien addition lines. PMID:26440082
Linkage and regional association analysis reveal two new tightly-linked major-QTLs for pod number and seed number per pod in rapeseed (Brassica napus L.). PMID:26434411
Map-based cloning reveals the complex organization of the BnRf locus and leads to the identification of BnRf(b), a male sterility gene, in Brassica napus. PMID:26433826
GDSL esterase/lipase genes in Brassica rapa L.: genome-wide identification and expression analysis. PMID:26423069
Comprehensive analysis of the flowering genes in Chinese cabbage and examination of evolutionary pattern of CO-like genes in plant kingdom. PMID:26416765
A Time-Calibrated Road Map of Brassicaceae Species Radiation and Evolutionary History. PMID:26410304
Comparative quantitative trait loci for silique length and seed weight in Brassica napus. PMID:26394547
Two cytochromes P450 catalyze S-heterocyclizations in cabbage phytoalexin biosynthesis. PMID:26389737
Molecular breeding in Brassica for salt tolerance: importance of microsatellite (SSR) markers for molecular breeding in Brassica. PMID:26388887
Improving the Annotation of Arabidopsis lyrata Using RNA-Seq Data. PMID:26382944
Identification, evolution, and expression partitioning of miRNAs in allopolyploid Brassica napus. PMID:26357884
Sequence and expression variation in SUPPRESSOR of OVEREXPRESSION of CONSTANS 1 (SOC1): homeolog evolution in Indian Brassicas. PMID:26276216
Leaf and root glucosinolate profiles of Chinese cabbage (Brassica rapa ssp. pekinensis) as a systemic response to methyl jasmonate and salicylic acid elicitation. PMID:26238545
Construction of Brassica A and C genome-based ordered pan-transcriptomes for use in rapeseed genomic research. PMID:26217816
Arabidopsis PCH2 Mediates Meiotic Chromosome Remodeling and Maturation of Crossovers. PMID:26182244
Characterization of FAE1 in the zero erucic acid germplasm of Brassica rapa L. PMID:26175623
Genome-Wide Survey and Expression Profile Analysis of the Mitogen-Activated Protein Kinase (MAPK) Gene Family in Brassica rapa. PMID:26173020
Genome-Wide Profiling of Histone Modifications (H3K9me2 and H4K12ac) and Gene Expression in Rust (Uromyces appendiculatus) Inoculated Common Bean (Phaseolus vulgaris L.). PMID:26167691
Genome-wide identification and Phylogenic analysis of kelch motif containing ACBP in Brassica napus. PMID:26156054
BcMF26a and BcMF26b Are Duplicated Polygalacturonase Genes with Divergent Expression Patterns and Functions in Pollen Development and Pollen Tube Formation in Brassica campestris. PMID:26153985
Evolution and conservation of JmjC domain proteins in the green lineage. PMID:26152513
Microspore culture reveals complex meiotic behaviour in a trigenomic Brassica hybrid. PMID:26152188
Carotenoid biosynthetic genes in Brassica rapa: comparative genomic analysis, phylogenetic analysis, and expression profiling. PMID:26138916
Defining the RNA-binding glycine-rich (RBG) gene superfamily: new insights into nomenclature, phylogeny, and evolutionary trends obtained by genome-wide comparative analysis of Arabidopsis, Chinese cabbage, rice and maize genomes. PMID:26123085
De Novo Regulatory Motif Discovery Identifies Significant Motifs in Promoters of Five Classes of Plant Dehydrin Genes. PMID:26114291
Construction of chromosome segment substitution lines enables QTL mapping for flowering and morphological traits in Brassica rapa. PMID:26106405
Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana. PMID:26103993
Widespread and evolutionary analysis of a MITE family Monkey King in Brassicaceae. PMID:26084405
An integrated database of wood-formation related genes in plants. PMID:26078228
Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size. PMID:26061193
Involvement of genes encoding ABI1 protein phosphatases in the response of Brassica napus L. to drought stress. PMID:26059040
The radish genome and comprehensive gene expression profile of tuberous root formation and development. PMID:26056784
Seedling development traits in Brassica napus examined by gene expression analysis and association mapping. PMID:26055390
Genome-wide survey and expression analysis of the PUB family in Chinese cabbage (Brassica rapa ssp. pekinesis). PMID:26054324
Large-Scale Evolutionary Analysis of Genes and Supergene Clusters from Terpenoid Modular Pathways Provides Insights into Metabolic Diversification in Flowering Plants. PMID:26046541
A bi-filtering method for processing single nucleotide polymorphism array data improves the quality of genetic map and accuracy of quantitative trait locus mapping in doubled haploid populations of polyploid Brassica napus. PMID:26018616
De Novo Assembly and Characterization of Stress Transcriptome in a Salinity-Tolerant Variety CS52 of Brassica juncea. PMID:25970274
Identification and expression analysis of BoMF25, a novel polygalacturonase gene involved in pollen development of Brassica oleracea. PMID:25967087
Transcriptome Analysis Comparison of Lipid Biosynthesis in the Leaves and Developing Seeds of Brassica napus. PMID:25965272
Recent progress in the use of 'omics technologies in brassicaceous vegetables. PMID:25926843
Genome-wide identification of SSR and SNP markers from the non-heading Chinese cabbage for comparative genomic analyses. PMID:25908429
Genome-wide identification of aquaporin encoding genes in Brassica oleracea and their phylogenetic sequence comparison to Brassica crops and Arabidopsis. PMID:25904922
Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement. PMID:25893781
New insights into the genetic networks affecting seed fatty acid concentrations in Brassica napus. PMID:25888376
Genome-wide identification and characterization of MADS-box family genes related to organ development and stress resistance in Brassica rapa. PMID:25881193
Unlimited Thirst for Genome Sequencing, Data Interpretation, and Database Usage in Genomic Era: The Road towards Fast-Track Crop Plant Improvement. PMID:25874133
Expression patterns of Brassica napus genes implicate IPT, CKX, sucrose transporter, cell wall invertase, and amino acid permease gene family members in leaf, flower, silique, and seed development. PMID:25873685
Comparative transcriptome analysis of the petal degeneration mutant pdm in Chinese cabbage (Brassica campestris ssp. pekinensis) using RNA-Seq. PMID:25860116
Genome-wide identification of evolutionarily conserved alternative splicing events in flowering plants. PMID:25859541
Beyond the thale: comparative genomics and genetics of Arabidopsis relatives. PMID:25854181
Sequencing consolidates molecular markers with plant breeding practice. PMID:25821196
Dynamic and comparative QTL analysis for plant height in different developmental stages of Brassica napus L. PMID:25796183
Allelic polymorphism of GIGANTEA is responsible for naturally occurring variation in circadian period in Brassica rapa. PMID:25775524
High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. PMID:25754422
Development of genic cleavage markers in association with seed glucosinolate content in canola. PMID:25748114
Transcriptomic analysis reveals differential gene expressions for cell growth and functional secondary metabolites in induced autotetraploid of Chinese woad (Isatis indigotica Fort.). PMID:25739089
Lineage-specific evolution of Methylthioalkylmalate synthases (MAMs) involved in glucosinolates biosynthesis. PMID:25691886
Molecular characterization and transcriptome analysis of orange head Chinese cabbage (Brassica rapa L. ssp. pekinensis). PMID:25686795
Transcriptome analysis of canola (Brassica napus) under salt stress at the germination stage. PMID:25679513
The elucidation of stress memory inheritance in Brassica rapa plants. PMID:25653665
Nascent transcription affected by RNA polymerase IV in Zea mays. PMID:25653306
Duplicate gene divergence by changes in microRNA binding sites in Arabidopsis and Brassica. PMID:25644246
Genome-wide SNP identification and QTL mapping for black rot resistance in cabbage. PMID:25644124
A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome. PMID:25637298
Genome-wide analysis of Dof family transcription factors and their responses to abiotic stresses in Chinese cabbage. PMID:25636232
A complex interplay of tandem- and whole-genome duplication drives expansion of the L-type lectin receptor kinase gene family in the brassicaceae. PMID:25635042
A draft genome of field pennycress (Thlaspi arvense) provides tools for the domestication of a new winter biofuel crop. PMID:25632110
Digital gene expression analysis of gene expression differences within Brassica diploids and allopolyploids. PMID:25623840
Characterization and stress-induced expression analysis of Alfin-like transcription factors in Brassica rapa. PMID:25618423
Genome-wide analysis of the R2R3-MYB transcription factor genes in Chinese cabbage (Brassica rapa ssp. pekinensis) reveals their stress and hormone responsive patterns. PMID:25613160
Use of targeted SNP selection for an improved anchoring of the melon (Cucumis melo L.) scaffold genome assembly. PMID:25612459
Gene families as soft cliques with backbones: Amborella contrasted with other flowering plants. PMID:25572777
Integration of a constraint-based metabolic model of Brassica napus developing seeds with (13)C-metabolic flux analysis. PMID:25566296
Patterns of evolutionary conservation of ascorbic acid-related genes following whole-genome triplication in Brassica rapa. PMID:25552535
Co-localisation of the blackleg resistance genes Rlm2 and LepR3 on Brassica napus chromosome A10. PMID:25551287
Functional analysis of the Brassica napus L. phytoene synthase (PSY) gene family. PMID:25506829
Generation and characterization of tribenuron-methyl herbicide-resistant rapeseed (Brasscia napus) for hybrid seed production using chemically induced male sterility. PMID:25504538
Anthocyanin biosynthesis for cold and freezing stress tolerance and desirable color in Brassica rapa. PMID:25504198
Investigation of terpene diversification across multiple sequenced plant genomes. PMID:25502595
Morphology, carbohydrate composition and vernalization response in a genetically diverse collection of Asian and European turnips (Brassica rapa subsp. rapa). PMID:25474111
A novel approach for multi-domain and multi-gene family identification provides insights into evolutionary dynamics of disease resistance genes in core eudicot plants. PMID:25380807
QTL analysis of root morphology, flowering time, and yield reveals trade-offs in response to drought in Brassica napus. PMID:25371500
Loss and retention of resistance genes in five species of the Brassicaceae family. PMID:25365911
Evening expression of arabidopsis GIGANTEA is controlled by combinatorial interactions among evolutionarily conserved regulatory motifs. PMID:25361953
A complex recombination pattern in the genome of allotetraploid Brassica napus as revealed by a high-density genetic map. PMID:25356735
Molecular evolution and transcriptional regulation of the oilseed rape proline dehydrogenase genes suggest distinct roles of proline catabolism during development. PMID:25326771
Genome-wide analysis of the expansin gene superfamily reveals Brassica rapa-specific evolutionary dynamics upon whole genome triplication. PMID:25325993
Species- and genome-wide dissection of the shoot ionome in Brassica napus and its relationship to seedling development. PMID:25324847
PLAZA 3.0: an access point for plant comparative genomics. PMID:25324309
Kazusa Marker DataBase: a database for genomics, genetics, and molecular breeding in plants. PMID:25320561
BraLTP1, a lipid transfer protein gene involved in epicuticular wax deposition, cell proliferation and flower development in Brassica napus. PMID:25314222
β-Amino-n-butyric Acid Regulates Seedling Growth and Disease Resistance of Kimchi Cabbage. PMID:25288957
Genome-wide identification and analysis of the growth-regulating factor family in Chinese cabbage (Brassica rapa L. ssp. pekinensis). PMID:25242257
Regulatory network of secondary metabolism in Brassica rapa: insight into the glucosinolate pathway. PMID:25222144
Genome-wide analysis of the MADS-box gene family in Brassica rapa (Chinese cabbage). PMID:25216934
Analysis of global gene expression profiles to identify differentially expressed genes critical for embryo development in Brassica rapa. PMID:25214014
Tetralocular ovary and high silique width in yellow sarson lines of Brassica rapa (subspecies trilocularis) are due to a mutation in Bra034340 gene, a homologue of CLAVATA3 in Arabidopsis. PMID:25205130
Capturing sequence variation among flowering-time regulatory gene homologs in the allopolyploid crop species Brassica napus. PMID:25202314
Deep RNA-Seq to unlock the gene bank of floral development in Sinapis arvensis. PMID:25192023
Evolution, expression differentiation and interaction specificity of heterotrimeric G-protein subunit gene family in the mesohexaploid Brassica rapa. PMID:25191920
Neofunctionalization of duplicated Tic40 genes caused a gain-of-function variation related to male fertility in Brassica oleracea lineages. PMID:25185122
Identification and characterization of microRNAs related to salt stress in broccoli, using high-throughput sequencing and bioinformatics analysis. PMID:25181943
Genome-wide transcriptome analysis of two contrasting Brassica rapa doubled haploid lines under cold-stresses using Br135K oligomeric chip. PMID:25167163
Identification and expression analysis of WRKY family genes under biotic and abiotic stresses in Brassica rapa. PMID:25149146
A high-throughput SNP array in the amphidiploid species Brassica napus shows diversity in resistance genes. PMID:25147024
Polymorphism identification and improved genome annotation of Brassica rapa through Deep RNA sequencing. PMID:25122667
Integrated syntenic and phylogenomic analyses reveal an ancient genome duplication in monocots. PMID:25082857
Genetical and comparative genomics of Brassica under altered Ca supply identifies Arabidopsis Ca-transporter orthologs. PMID:25082855
Quantitative trait loci for thermal time to flowering and photoperiod responsiveness discovered in summer annual-type Brassica napus L. PMID:25061822
Comparative analysis of the radish genome based on a conserved ortholog set (COS) of Brassica. PMID:25056003
Polyploid evolution of the Brassicaceae during the Cenozoic era. PMID:25035408
Functional innovations of three chronological mesohexaploid Brassica rapa genomes. PMID:25033750
Insights into the evolution and domain structure of Ataxin-2 proteins across eukaryotes. PMID:25027299
The 2-C-methylerythritol 4-phosphate pathway in melon is regulated by specialized isoforms for the first and last steps. PMID:25013119
Microarray expression analysis of the main inflorescence in Brassica napus. PMID:25007212
Intergenomic single nucleotide polymorphisms as a tool for bacterial artificial chromosome contig building of homoeologous Brassica napus regions. PMID:24996518
Mutations in single FT- and TFL1-paralogs of rapeseed (Brassica napus L.) and their impact on flowering time and yield components. PMID:24987398
Recent progress in drought and salt tolerance studies in Brassica crops. PMID:24987291
Glucosinolate metabolism, functionality and breeding for the improvement of Brassicaceae vegetables. PMID:24987290
Comparative genomics of Brassicaceae crops. PMID:24987286
Genomics and breeding of Brassicaceae crops. PMID:24987285
Genome-wide identification and characterization of aquaporin genes (AQPs) in Chinese cabbage (Brassica rapa ssp. pekinensis). PMID:24972664
Genome-wide analysis of the NADK gene family in plants. PMID:24968225
Ancestral repeats have shaped epigenome and genome composition for millions of years in Arabidopsis thaliana. PMID:24954583
BrassicaTED - a public database for utilization of miniature transposable elements in Brassica species. PMID:24948109
Homoeologous duplicated regions are involved in quantitative resistance of Brassica napus to stem canker. PMID:24948032
Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea. PMID:24916971
Delineation of plant caleosin residues critical for functional divergence, positive selection and coevolution. PMID:24913827
Fine mapping of a dominant thermo-sensitive genic male sterility gene (BntsMs) in rapeseed (Brassica napus) with AFLP- and Brassica rapa-derived PCR markers. PMID:24913363
Construction and analysis of high-density linkage map using high-throughput sequencing data. PMID:24905985
Anthocyanin biosynthetic genes in Brassica rapa. PMID:24893600
Cotyledon-Generated Auxin Is Required for Shade-Induced Hypocotyl Growth in Brassica rapa. PMID:24891610
Genome-wide analysis of the distribution of AP2/ERF transcription factors reveals duplication and CBFs genes elucidate their potential function in Brassica oleracea. PMID:24888752
Functional identification of genes responsible for the biosynthesis of 1-methoxy-indol-3-ylmethyl-glucosinolate in Brassica rapa ssp. chinensis. PMID:24886080
RNA-seq based SNPs for mapping in Brassica juncea (AABB): synteny analysis between the two constituent genomes A (from B. rapa) and B (from B. nigra) shows highly divergent gene block arrangement and unique block fragmentation patterns. PMID:24886001
Cadmium exposure and sulfate limitation reveal differences in the transcriptional control of three sulfate transporter (Sultr1;2) genes in Brassica juncea. PMID:24884748
Consequences of Whole-Genome Triplication as Revealed by Comparative Genomic Analyses of the Wild Radish Raphanus raphanistrum and Three Other Brassicaceae Species. PMID:24876251
The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes. PMID:24852848
Draft sequences of the radish (Raphanus sativus L.) genome. PMID:24848699
Extending the model of Arabidopsis telomere length and composition across Brassicaceae. PMID:24846723
Pol IV-Dependent siRNA Production is Reduced in Brassica rapa. PMID:24833221
Analysis of transposable elements in the genome of Asparagus officinalis from high coverage sequence data. PMID:24810432
A combined linkage and regional association mapping validation and fine mapping of two major pleiotropic QTLs for seed weight and silique length in rapeseed (Brassica napus L.). PMID:24779415
The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure. PMID:24759634
Genome-wide comparative analysis of 20 miniature inverted-repeat transposable element families in Brassica rapa and B. oleracea. PMID:24747717
Deep investigation of Arabidopsis thaliana junk DNA reveals a continuum between repetitive elements and genomic dark matter. PMID:24709859
Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids. PMID:24706847
Two plastid DNA lineages--Rapa/Oleracea and Nigra--within the tribe Brassiceae can be best explained by reciprocal crosses at hexaploidy: evidence from divergence times of the plastid genomes and R-block genes of the A and B genomes of Brassica juncea. PMID:24691069
Beyond genomic variation--comparison and functional annotation of three Brassica rapa genomes: a turnip, a rapid cycling and a Chinese cabbage. PMID:24684742
Plant systems biology: insights, advances and challenges. PMID:24671625
Identification of candidate genes for Fusarium yellows resistance in Chinese cabbage by differential expression analysis. PMID:24668026
ER bodies in plants of the Brassicales order: biogenesis and association with innate immunity. PMID:24653729
Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation. PMID:24653211
QTL architecture of reproductive fitness characters in Brassica rapa. PMID:24641198
Investment in plant research and development bears fruit in China. PMID:24615161
Genome-wide identification, classification and expression analysis of the heat shock transcription factor family in Chinese cabbage. PMID:24609322
Say it with flowers: flowering acceleration by root communication. PMID:24598343
Genome-wide identification, phylogeny, duplication, and expression analyses of two-component system genes in Chinese cabbage (Brassica rapa ssp. pekinensis). PMID:24585003
Genome sequencing of the high oil crop sesame provides insight into oil biosynthesis. PMID:24576357
Sixteen cytosolic glutamine synthetase genes identified in the Brassica napus L. genome are differentially regulated depending on nitrogen regimes and leaf senescence. PMID:24567494
The fate of chromosomes and alleles in an allohexaploid Brassica population. PMID:24558262
Genome-wide association study dissects the genetic architecture of seed weight and seed quality in rapeseed (Brassica napus L.). PMID:24510440
Genome survey sequencing provides clues into glucosinolate biosynthesis and flowering pathway evolution in allotetrapolyploid Brassica juncea. PMID:24502855
Analyses of hypomethylated oil palm gene space. PMID:24497974
Genome-wide survey and expression analysis of the putative non-specific lipid transfer proteins in Brassica rapa L. PMID:24497919
Revisiting the evolutionary history and roles of protein phosphatases with Kelch-like domains in plants. PMID:24492333
The control of seed oil polyunsaturate content in the polyploid crop species Brassica napus. PMID:24489479
Genotype-environment interactions affecting preflowering physiological and morphological traits of Brassica rapa grown in two watering regimes. PMID:24474811
Assessing quantitative resistance against Leptosphaeria maculans (phoma stem canker) in Brassica napus (oilseed rape) in young plants. PMID:24454767
Genome-wide identification, phylogenetic analysis, expression profiling, and protein-protein interaction properties of TOPLESS gene family members in tomato. PMID:24399174
Genetic dissection of leaf development in Brassica rapa using a genetical genomics approach. PMID:24394778
Genome-wide identification, phylogeny, evolution and expression patterns of AP2/ERF genes and cytokinin response factors in Brassica rapa ssp. pekinensis. PMID:24386201
A high-density SNP map for accurate mapping of seed fibre QTL in Brassica napus L. PMID:24386142
MicroRNA319a-targeted Brassica rapa ssp. pekinensis TCP genes modulate head shape in chinese cabbage by differential cell division arrest in leaf regions. PMID:24351684
A novel dominant glossy mutation causes suppression of wax biosynthesis pathway and deficiency of cuticular wax in Brassica napus. PMID:24330756
Construction of a genetic map based on high-throughput SNP genotyping and genetic mapping of a TuMV resistance locus in Brassica rapa. PMID:24326528
Global analysis of cis-natural antisense transcripts and their heat-responsive nat-siRNAs in Brassica rapa. PMID:24320882
Integrated genomics and molecular breeding approaches for dissecting the complex quantitative traits in crop plants. PMID:24296899
Genome-wide analysis of coordinated transcript abundance during seed development in different Brassica rapa morphotypes. PMID:24289287
Characterization and co-expression analysis of WRKY orthologs involved in responses to multiple abiotic stresses in Pak-choi (Brassica campestris ssp. chinensis). PMID:24267479
Transcriptome analysis of leaf tissue of Raphanus sativus by RNA sequencing. PMID:24265813
Genome-wide analysis of the bHLH transcription factor family in Chinese cabbage (Brassica rapa ssp. pekinensis). PMID:24241166
Identification of putative quantitative trait loci associated with a flavonoid related to resistance to cabbage seedpod weevil (Ceutorhynchus obstrictus) in canola derived from an intergeneric cross, Sinapis alba × Brassica napus. PMID:24231920
Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain. PMID:24218605
QTL mapping of leafy heads by genome resequencing in the RIL population of Brassica rapa. PMID:24204591
Phylogenetic Analysis of Brassica rapa MATH-Domain Proteins. PMID:24179444
P-MITE: a database for plant miniature inverted-repeat transposable elements. PMID:24174541
Whole genome and tandem duplicate retention facilitated glucosinolate pathway diversification in the mustard family. PMID:24171911
Comprehensive analysis of expressed sequence tags from cultivated and wild radish (Raphanus spp.). PMID:24144082
Identification of genome-wide single nucleotide polymorphisms in allopolyploid crop Brassica napus. PMID:24138473
The fate of tandemly duplicated genes assessed by the expression analysis of a group of Arabidopsis thaliana RING-H2 ubiquitin ligase genes of the ATL family. PMID:24135966
Genome-wide microsatellite characterization and marker development in the sequenced Brassica crop species. PMID:24130371
Association of molecular markers derived from the BrCRTISO1 gene with prolycopene-enriched orange-colored leaves in Brassica rapa [corrected]. PMID:24121567
Comprehensive analysis of RNA-seq data reveals the complexity of the transcriptome in Brassica rapa. PMID:24098974
Identification and characterization of NF-Y transcription factor families in Canola (Brassica napus L.). PMID:24097262
The Brassica rapa FLC homologue FLC2 is a key regulator of flowering time, identified through transcriptional co-expression networks. PMID:24078668
Applications and challenges of next-generation sequencing in Brassica species. PMID:24062086
Cell type-specific transcriptome of Brassicaceae stigmatic papilla cells from a combination of laser microdissection and RNA sequencing. PMID:24058146
Whole genome duplication events in plant evolution reconstructed and predicted using myosin motor proteins. PMID:24053117
Importance of gene duplication in the evolution of genomic imprinting revealed by molecular evolutionary analysis of the type I MADS-box gene family in Arabidopsis species. PMID:24039992
Comprehensive analysis of genic male sterility-related genes in Brassica rapa using a newly developed Br300K oligomeric chip. PMID:24039743
Screening of a Brassica napus bacterial artificial chromosome library using highly parallel single nucleotide polymorphism assays. PMID:24010766
Divergent evolutionary and expression patterns between lineage specific new duplicate genes and their parental paralogs in Arabidopsis thaliana. PMID:24009676
Identification, expression, and comparative genomic analysis of the IPT and CKX gene families in Chinese cabbage (Brassica rapa ssp. pekinensis). PMID:24001366
Genome-wide characterization of the Pectate Lyase-like (PLL) genes in Brassica rapa. PMID:23999922
The Tarenaya hassleriana genome provides insight into reproductive trait and genome evolution of crucifers. PMID:23983221
Genome-wide analysis of the AP2/ERF transcription factor superfamily in Chinese cabbage (Brassica rapa ssp. pekinensis). PMID:23972083
CrusView: a Java-based visualization platform for comparative genomics analyses in Brassicaceae species. PMID:23898041
Genetic analysis of health-related secondary metabolites in a Brassica rapa recombinant inbred line population. PMID:23892600
Tracing the transcriptomic changes in synthetic Trigenomic allohexaploids of Brassica using an RNA-Seq approach. PMID:23874799
Induced production of 1-methoxy-indol-3-ylmethyl glucosinolate by jasmonic acid and methyl jasmonate in sprouts and leaves of pak choi (Brassica rapa ssp. chinensis). PMID:23873294
Comparative mapping of Raphanus sativus genome using Brassica markers and quantitative trait loci analysis for the Fusarium wilt resistance trait. PMID:23864230
Construction of a chromosome-assigned, sequence-tagged linkage map for the radish, Raphanus sativus L. and QTL analysis of morphological traits. PMID:23853517
RNA-seq based SNPs in some agronomically important oleiferous lines of Brassica rapa and their use for genome-wide linkage mapping and specific-region fine mapping. PMID:23837684
An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions. PMID:23817568
Turning over a new leaf in plant genomics. PMID:23805981
Genomics reveals new landscapes for crop improvement. PMID:23796126
De novo assembly of the pennycress (Thlaspi arvense) transcriptome provides tools for the development of a winter cover crop and biodiesel feedstock. PMID:23786378
Detection and genotyping of restriction fragment associated polymorphisms in polyploid crops with a pseudo-reference sequence: a case study in allotetraploid Brassica napus. PMID:23706002
Differential accumulation of phenolic compounds and expression of related genes in black- and yellow-seeded Brassica napus. PMID:23698630
The genome of the mustard leaf beetle encodes two active xylanases originally acquired from bacteria through horizontal gene transfer. PMID:23698014
Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.). PMID:23663246
KNOX1 genes regulate lignin deposition and composition in monocots and dicots. PMID:23653631
Deciphering the diploid ancestral genome of the Mesohexaploid Brassica rapa. PMID:23653472
Reconstruction of the Brassica rapa ancestral genome. PMID:23653469
Fine mapping of the clubroot resistance gene CRb and development of a useful selectable marker in Brassica rapa. PMID:23641188
DNA marker applications to molecular genetics and genomics in tomato. PMID:23641178
A consensus map of rapeseed (Brassica napus L.) based on diversity array technology markers: applications in genetic dissection of qualitative and quantitative traits. PMID:23617817
Conserved microstructure of the Brassica B Genome of Brassica nigra in relation to homologous regions of Arabidopsis thaliana, B. rapa and B. oleracea. PMID:23586706
Mapping quantitative trait loci for tissue culture response in VCS3M-DH population of Brassica rapa. PMID:23563522
Evolutionary dynamics of microsatellite distribution in plants: insight from the comparison of sequenced brassica, Arabidopsis and other angiosperm species. PMID:23555856
Characterization of a new high copy Stowaway family MITE, BRAMI-1 in Brassica genome. PMID:23547712
Homoeologous GSL-ELONG gene replacement for manipulation of aliphatic glucosinolates in Brassica rapa L. by marker assisted selection. PMID:23532458
The Reference Genome of the Halophytic Plant Eutrema salsugineum. PMID:23518688
The fate of Arabidopsis thaliana homeologous CNSs and their motifs in the Paleohexaploid Brassica rapa. PMID:23493633
MicroRNAs and their putative targets in Brassica napus seed maturation. PMID:23448243
Reprogramming the phenylpropanoid metabolism in seeds of oilseed rape by suppressing the orthologs of reduced epidermal fluorescence1. PMID:23424250
Identification and characterization of Crr1a, a gene for resistance to clubroot disease (Plasmodiophora brassicae Woronin) in Brassica rapa L. PMID:23382954
QTL for yield traits and their association with functional genes in response to phosphorus deficiency in Brassica napus. PMID:23382913
Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants. PMID:23382190
Genome-wide identification and analysis of the B3 superfamily of transcription factors in Brassicaceae and major crop plants. PMID:23377560
Use of digital gene expression to discriminate gene expression differences in early generations of resynthesized Brassica napus and its diploid progenitors. PMID:23369045
Locally duplicated ohnologs evolve faster than nonlocally duplicated ohnologs in Arabidopsis and rice. PMID:23362157
Transcriptome profile analysis of young floral buds of fertile and sterile plants from the self-pollinated offspring of the hybrid between novel restorer line NR1 and Nsa CMS line in Brassica napus. PMID:23324545
A heterozygous moth genome provides insights into herbivory and detoxification. PMID:23313953
QTL analysis using SNP markers developed by next-generation sequencing for identification of candidate genes controlling 4-methylthio-3-butenyl glucosinolate contents in roots of radish, Raphanus sativus L. PMID:23308250
Inferring the Brassica rapa Interactome Using Protein-Protein Interaction Data from Arabidopsis thaliana. PMID:23293649
A dominant point mutation in a RINGv E3 ubiquitin ligase homoeologous gene leads to cleistogamy in Brassica napus. PMID:23277363
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. PMID:23257886
A triallelic genetic male sterility locus in Brassica napus: an integrative strategy for its physical mapping and possible local chromosome evolution around it. PMID:23243189
A Tourist-like MITE insertion in the upstream region of the BnFLC.A10 gene is associated with vernalization requirement in rapeseed (Brassica napus L.). PMID:23241244
The Impact of Genome Triplication on Tandem Gene Evolution in Brassica rapa. PMID:23226149
Quantitative trait loci mapping in Brassica rapa revealed the structural and functional conservation of genetic loci governing morphological and yield component traits in the A, B, and C subgenomes of Brassica species. PMID:23223793
Identification of candidate genes of QTLs for seed weight in Brassica napus through comparative mapping among Arabidopsis and Brassica species. PMID:23216693
The putative phytocyanin genes in Chinese cabbage (Brassica rapa L.): genome-wide identification, classification and expression analysis. PMID:23212439
The ARC1 E3 ligase gene is frequently deleted in self-compatible Brassicaceae species and has a conserved role in Arabidopsis lyrata self-pollen rejection. PMID:23204404
Genetic analysis of hybrid seed formation ability of Brassica rapa in intergeneric crossings with Raphanus sativus. PMID:23203221
The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions. PMID:23179023
High-throughput root phenotyping screens identify genetic loci associated with root architectural traits in Brassica napus under contrasting phosphate availabilities. PMID:23172414
Identification and profiling of novel microRNAs in the Brassica rapa genome based on small RNA deep sequencing. PMID:23163954
Sequencing of chloroplast genome using whole cellular DNA and solexa sequencing technology. PMID:23162558
Microstructure of a Brassica rapa genome segment homoeologous to the resistance gene cluster on Arabidopsis chromosome 4. PMID:23136528
Combining proteomics and transcriptome sequencing to identify active plant-cell-wall-degrading enzymes in a leaf beetle. PMID:23116131
Comparative transcriptome analysis of tobacco (Nicotiana tabacum) leaves to identify aroma compound-related genes expressed in different cultivated regions. PMID:23079704
Design of new genome- and gene-sourced primers and identification of QTL for seed oil content in a specially high-oil Brassica napus cultivar. PMID:23077542
Promoter variation and transcript divergence in Brassicaceae lineages of FLOWERING LOCUS T. PMID:23071733
Conservation of two lineages of peroxisomal (Type I) 3-ketoacyl-CoA thiolases in land plants, specialization of the genes in Brassicaceae, and characterization of their expression in Arabidopsis thaliana. PMID:23066143
Genome-wide identification, classification and expression analysis of genes encoding putative fasciclin-like arabinogalactan proteins in Chinese cabbage (Brassica rapa L.). PMID:23053954
Comparative analysis of FLC homologues in Brassicaceae provides insight into their role in the evolution of oilseed rape. PMID:23029223
Dissecting quantitative trait loci for boron efficiency across multiple environments in Brassica napus. PMID:23028855
Identification and characterization of orthologs of AtNHX5 and AtNHX6 in Brassica napus. PMID:22973287
Development of InDel markers for Brassica rapa based on whole-genome re-sequencing. PMID:22972202
Syntenic gene analysis between Brassica rapa and other Brassicaceae species. PMID:22969786
Genetic and physical mapping of flowering time loci in canola (Brassica napus L.). PMID:22955939
A phylogenetic analysis of the brassicales clade based on an alignment-free sequence comparison method. PMID:22952468
Accessing complex crop genomes with next-generation sequencing. PMID:22948437
The tomato genome: implications for plant breeding, genomics and evolution. PMID:22943138
A naturally occurring InDel variation in BraA.FLC.b (BrFLC2) associated with flowering time variation in Brassica rapa. PMID:22925611
Auxin response factor gene family in Brassica rapa: genomic organization, divergence, expression, and evolution. PMID:22915303
Genetic analysis of morphological traits in a new, versatile, rapid-cycling Brassica rapa recombinant inbred line population. PMID:22912644
Unleashing the genome of brassica rapa. PMID:22866056
Associative transcriptomics of traits in the polyploid crop species Brassica napus. PMID:22820317
Order in the playground: Formation of plant gene clusters in dynamic chromosomal regions. PMID:22754752
High-throughput polymorphism detection and genotyping in Brassica napus using next-generation RAD sequencing. PMID:22726880
Tackling drought stress: receptor-like kinases present new approaches. PMID:22693282
Preferential retention of circadian clock genes during diploidization following whole genome triplication in Brassica rapa. PMID:22685167
A genetic linkage map of Brassica carinata constructed with a doubled haploid population. PMID:22669300
High-throughput sequencing discovery of conserved and novel microRNAs in Chinese cabbage (Brassica rapa L. ssp. pekinensis). PMID:22643909
Escape from preferential retention following repeated whole genome duplications in plants. PMID:22639677
Seed colour loci, homoeology and linkage groups of the C genome chromosomes revealed in Brassica rapa-B. oleracea monosomic alien addition lines. PMID:22628364
Fine mapping and candidate gene analysis of the nuclear restorer gene Rfp for pol CMS in rapeseed (Brassica napus L.). PMID:22614178
Grass microRNA gene paleohistory unveils new insights into gene dosage balance in subgenome partitioning after whole-genome duplication. PMID:22589464
Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential. PMID:22580950
Biased gene fractionation and dominant gene expression among the subgenomes of Brassica rapa. PMID:22567157
Discovery of pod shatter-resistant associated SNPs by deep sequencing of a representative library followed by bulk segregant analysis in rapeseed. PMID:22529909
Cytoplasmic and genomic effects on meiotic pairing in Brassica hybrids and allotetraploids from pair crosses of three cultivated diploids. PMID:22505621
Identification and mapping of a major dominant quantitative trait locus controlling seeds per silique as a single Mendelian factor in Brassica napus L. PMID:22487878
Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish. PMID:22476438
Size and location of radish chromosome regions carrying the fertility restorer Rfk1 gene in spring turnip rape. PMID:22476396
The BnGRF2 gene (GRF2-like gene from Brassica napus) enhances seed oil production through regulating cell number and plant photosynthesis. PMID:22442419
Construction of a high-resolution linkage map of Rfd1, a restorer-of-fertility locus for cytoplasmic male sterility conferred by DCGMS cytoplasm in radish (Raphanus sativus L.) using synteny between radish and Arabidopsis genomes. PMID:22434503
Assigning Brassica microsatellite markers to the nine C-genome chromosomes using Brassica rapa var. trilocularis-B. oleracea var. alboglabra monosomic alien addition lines. PMID:22422193
Exploiting comparative mapping among Brassica species to accelerate the physical delimitation of a genic male-sterile locus (BnRf) in Brassica napus. PMID:22382487
Distribution of calcium (Ca) and magnesium (Mg) in the leaves of Brassica rapa under varying exogenous Ca and Mg supply. PMID:22362665
Characterization of transcriptional activation and inserted-into-gene preference of various transposable elements in the Brassica species. PMID:22327652
Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy. PMID:22308264
A genome triplication associated with early diversification of the core eudicots. PMID:22280555
Retention of triplicated phytoene synthase (PSY) genes in Brassica napus L. and its diploid progenitors during the evolution of the Brassiceae. PMID:22241480
Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the rosids. PMID:22180627
Phylogenetic analysis and classification of the Brassica rapa SET-domain protein family. PMID:22168908
Advances in omics and bioinformatics tools for systems analyses of plant functions. PMID:22156726
BRAD, the genetics and genomics database for Brassica plants. PMID:21995777
http://dx.doi.org/10.1038/ng.919

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genome
metasource: Fairsharing.org
version: FAIRsharing.org: Brassica Genome; Brassica Genome; DOI: https://doi.org/10.25504/FAIRsharing.mzk12n; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

other plants
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:19.756596

genome plant other plants

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Gramene: A curated, open-source, integrated data resource for comparative functional genomics in plants

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