Daphnia Water Flea Genome Database
Names
More detailed information about this field from each metasource.
Daphnia Water Flea Genome Database
metasource: Fairsharing.org
version: FAIRsharing.org: wFleaBase; Daphnia Water Flea Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.h5epxm; Last edited: April 26, 2021, 9:32 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
wFleaBase
metasource: Fairsharing.org
version: FAIRsharing.org: wFleaBase; Daphnia Water Flea Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.h5epxm; Last edited: April 26, 2021, 9:32 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
Daphnia Water Flea Genome Database
metasource: Fairsharing.orgversion: FAIRsharing.org: wFleaBase; Daphnia Water Flea Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.h5epxm; Last edited: April 26, 2021, 9:32 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
wFleaBase
metasource: Fairsharing.orgversion: FAIRsharing.org: wFleaBase; Daphnia Water Flea Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.h5epxm; Last edited: April 26, 2021, 9:32 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
Daphnia Water Flea Genome Database
metasource: Fairsharing.orgversion: FAIRsharing.org: wFleaBase; Daphnia Water Flea Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.h5epxm; Last edited: April 26, 2021, 9:32 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
wFleaBase
metasource: Fairsharing.orgversion: FAIRsharing.org: wFleaBase; Daphnia Water Flea Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.h5epxm; Last edited: April 26, 2021, 9:32 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
wFleaBase includes data from all species of the genus, yet the primary species are Daphnia pulex and Daphnia magna, because of the broad set of genomic tools that have already been developed for these animals.
Description
More detailed information about this field from each metasource.
wFleaBase includes data from all species of the genus, yet the primary species are Daphnia pulex and Daphnia magna, because of the broad set of genomic tools that have already been developed for these animals.
metasource: Fairsharing.orgversion: FAIRsharing.org: wFleaBase; Daphnia Water Flea Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.h5epxm; Last edited: April 26, 2021, 9:32 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
wFleaBase (http://wfleabase.org/) This database has been providing genome researchers with rapid usable access to the ecological-genetic model organism Daphnia pulex (a fresh-water crustacean of world distribution, widely used in research on ecology, environmental toxicology, and evolution) since 2003. With the recent publication of Daphnia pulex genome, this new arthropod genome provides an important evolutionary midpoint between insect and nematode genomes. wFleaBase includes genome annotations with model organism genes, gene predictions, reagant and marker sequences (EST, cDNA, microsatellite). Multiple genome assemblies from JAZZ, Arachne and PCAP assemblers are being validated to provide a best assembly, with close matching to genetic (recombination) map evidence. Tools of the Generic Model Organism Database project are used to develop this database, including Chado database schema, GBrowse and CMap genome maps, BioMart data mining and BLAST genome searches.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://wfleabase.org/Webpage
More detailed information about this field from each metasource.
http://wfleabase.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: wFleaBase; Daphnia Water Flea Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.h5epxm; Last edited: April 26, 2021, 9:32 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Licence:
Name: Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0Licence name
More detailed information about this field from each metasource.
Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0
metasource: Fairsharing.orgversion: FAIRsharing.org: wFleaBase; Daphnia Water Flea Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.h5epxm; Last edited: April 26, 2021, 9:32 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Licence URL
More detailed information about this field from each metasource.
http://opendatacommons.org/licenses/pddl/1.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: wFleaBase; Daphnia Water Flea Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.h5epxm; Last edited: April 26, 2021, 9:32 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
wFleaBase: the Daphnia genome database
PMID: 15752432
metasource: Fairsharing.org
version: FAIRsharing.org: wFleaBase; Daphnia Water Flea Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.h5epxm; Last edited: April 26, 2021, 9:32 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications
More detailed information about this field from each metasource.
wFleaBase: the Daphnia genome database
PMID: 15752432
metasource: Fairsharing.org
version: FAIRsharing.org: wFleaBase; Daphnia Water Flea Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.h5epxm; Last edited: April 26, 2021, 9:32 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
-
wFleaBase: the Daphnia genome database
PubMed citations: 59.
59 articles citing: wFleaBase: the Daphnia genome database
Phenotypic and transcriptional response of Daphnia pulicaria to the combined effects of temperature and predation. PMID:35834446
Measuring Daphnia life history in the wild: The efficacy of individual field cages. PMID:34938482
Draft genomes for one Microcystis-resistant and one Microcystis-sensitive strain of the water flea, Daphnia pulicaria. PMID:34849790
DNMT3.1 controls trade-offs between growth, reproduction, and life span under starved conditions in Daphnia magna. PMID:33795753
The complexity of co-limitation: nutrigenomics reveal non-additive interactions of calcium and phosphorus on gene expression in Daphnia pulex. PMID:33352081
Transcriptome sequencing of a keystone aquatic herbivore yields insights on the temperature-dependent metabolism of essential lipids. PMID:31752680
MicroRNAs in Daphnia magna identified and characterized by deep sequencing, genome mapping and manual curation. PMID:31685896
Daphnia stressor database: Taking advantage of a decade of Daphnia '-omics' data for gene annotation. PMID:31366898
Comparative Transcriptome Analysis for Understanding Predator-Induced Polyphenism in the Water Flea Daphnia pulex. PMID:30036973
Daphnia diversity on the Tibetan Plateau measured by DNA taxonomy. PMID:29876082
Differential gene transcription across the life cycle in Daphnia magna using a new all genome custom-made microarray. PMID:29776339
CPAP3 proteins in the mineralized cuticle of a decapod crustacean. PMID:29403068
A New Standard for Crustacean Genomes: The Highly Contiguous, Annotated Genome Assembly of the Clam Shrimp Eulimnadia texana Reveals HOX Gene Order and Identifies the Sex Chromosome. PMID:29294012
Early transcriptional response pathways in Daphnia magna are coordinated in networks of crustacean-specific genes. PMID:28746735
Transcriptomic, cellular and life-history responses of Daphnia magna chronically exposed to benzotriazoles: Endocrine-disrupting potential and molting effects. PMID:28196088
Diet quality determines lipase gene expression and lipase/esterase activity in Daphnia pulex. PMID:28069588
OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs. PMID:27899580
Transcriptomic analysis of the autophagy machinery in crustaceans. PMID:27506197
Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors. PMID:27164179
The evolutionary landscape of intergenic trans-splicing events in insects. PMID:26521696
Extensive error in the number of genes inferred from draft genome assemblies. PMID:25474019
OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software. PMID:25428351
Deciphering the genetic basis of microcystin tolerance. PMID:25199885
Transcription patterns of genes encoding four metallothionein homologs in Daphnia pulex exposed to copper and cadmium are time- and homolog-dependent. PMID:24113165
Molecular cloning of doublesex genes of four cladocera (water flea) species. PMID:23575357
Ionotropic crustacean olfactory receptors. PMID:23573266
Why so many unknown genes? Partitioning orphans from a representative transcriptome of the lone star tick Amblyomma americanum. PMID:23445305
OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs. PMID:23180791
Identification of pathways, gene networks, and paralogous gene families in Daphnia pulex responding to exposure to the toxic cyanobacterium Microcystis aeruginosa. PMID:22799445
The Epigenetic Repertoire of Daphnia magna Includes Modified Histones. PMID:22567378
Population genomics of resource exploitation: insights from gene expression profiles of two Daphnia ecotypes fed alternate resources. PMID:22423327
Functional characterization of four metallothionein genes in Daphnia pulex exposed to environmental stressors. PMID:22266576
Slit/Robo-mediated axon guidance in Tribolium and Drosophila: divergent genetic programs build insect nervous systems. PMID:22245052
A remarkably stable TipE gene cluster: evolution of insect Para sodium channel auxiliary subunits. PMID:22098672
Genomic identification of a putative circadian system in the cladoceran crustacean Daphnia pulex. PMID:21798832
Single nucleotide polymorphism discovery from expressed sequence tags in the waterflea Daphnia magna. PMID:21668940
Histaminergic signaling in the central nervous system of Daphnia and a role for it in the control of phototactic behavior. PMID:21525325
Genomics of environmentally induced phenotypes in 2 extremely plastic arthropods. PMID:21525179
Environmental sex determination in the branchiopod crustacean Daphnia magna: deep conservation of a Doublesex gene in the sex-determining pathway. PMID:21455482
Development of an RNA interference method in the cladoceran crustacean Daphnia magna. PMID:21327957
Predicted sub-populations in a marine shrimp proteome as revealed by combined EST and cDNA data from multiple Penaeus species. PMID:21067619
OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011. PMID:20972218
Ecological genomics: steps towards unraveling the genetic basis of inducible defenses in Daphnia. PMID:20529235
Evolution of a genomic regulatory domain: the role of gene co-option and gene duplication in the Enhancer of split complex. PMID:20458100
Gene expression and activity of digestive proteases in Daphnia: effects of cyanobacterial protease inhibitors. PMID:20441581
Gene up-regulation in response to predator kairomones in the water flea, Daphnia pulex. PMID:20433737
A survey of well conserved families of C2H2 zinc-finger genes in Daphnia. PMID:20433734
The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources. PMID:19965766
Annotation, phylogenetics, and expression of the nuclear receptors in Daphnia pulex. PMID:19863811
The chemoreceptor genes of the waterflea Daphnia pulex: many Grs but no Ors. PMID:19383158
Nucleotide polymorphism and within-gene recombination in Daphnia magna and D. pulex, two cyclical parthenogens. PMID:19299338
Neural processing, perception, and behavioral responses to natural chemical stimuli by fish and crustaceans. PMID:18521679
Cuticle differentiation in the embryo of the amphipod crustacean Parhyale hawaiensis. PMID:18293012
Phylogenetic characterization and prevalence of "Spirobacillus cienkowskii," a red-pigmented, spiral-shaped bacterial pathogen of freshwater Daphnia species. PMID:18192404
Gene response profiles for Daphnia pulex exposed to the environmental stressor cadmium reveals novel crustacean metallothioneins. PMID:18154678
Anciently duplicated Broad Complex exons have distinct temporal functions during tissue morphogenesis. PMID:17530286
DroSpeGe: rapid access database for new Drosophila species genomes. PMID:17202166
Toxicogenomics in regulatory ecotoxicology. PMID:16856717
Expression of target and reference genes in Daphnia magna exposed to ibuprofen. PMID:16827938
Tags:
Tags
More detailed information about this field from each metasource.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: wFleaBase; Daphnia Water Flea Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.h5epxm; Last edited: April 26, 2021, 9:32 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome visualization
metasource: Fairsharing.org
version: FAIRsharing.org: wFleaBase; Daphnia Water Flea Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.h5epxm; Last edited: April 26, 2021, 9:32 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
invertebrate genome databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: wFleaBase; Daphnia Water Flea Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.h5epxm; Last edited: April 26, 2021, 9:32 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome visualization
metasource: Fairsharing.orgversion: FAIRsharing.org: wFleaBase; Daphnia Water Flea Genome Database; DOI: https://doi.org/10.25504/FAIRsharing.h5epxm; Last edited: April 26, 2021, 9:32 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
invertebrate genome databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
genome genome visualization genomics invertebrate genome
Need help integrating and/or managing biomedical data?