Drosophila Species Genomes
Names
More detailed information about this field from each metasource.
Drosophila Species Genomes
metasource: Fairsharing.org
version: FAIRsharing.org: DroSpeGe; Drosophila Species Genomes; DOI: https://doi.org/10.25504/FAIRsharing.me577e; Last edited: April 26, 2021, 8:18 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
DroSpeGe
metasource: Fairsharing.org
version: FAIRsharing.org: DroSpeGe; Drosophila Species Genomes; DOI: https://doi.org/10.25504/FAIRsharing.me577e; Last edited: April 26, 2021, 8:18 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
Drosophila Species Genomes
metasource: Fairsharing.orgversion: FAIRsharing.org: DroSpeGe; Drosophila Species Genomes; DOI: https://doi.org/10.25504/FAIRsharing.me577e; Last edited: April 26, 2021, 8:18 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
DroSpeGe
metasource: Fairsharing.orgversion: FAIRsharing.org: DroSpeGe; Drosophila Species Genomes; DOI: https://doi.org/10.25504/FAIRsharing.me577e; Last edited: April 26, 2021, 8:18 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
Drosophila Species Genomes
metasource: Fairsharing.orgversion: FAIRsharing.org: DroSpeGe; Drosophila Species Genomes; DOI: https://doi.org/10.25504/FAIRsharing.me577e; Last edited: April 26, 2021, 8:18 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
DroSpeGe
metasource: Fairsharing.orgversion: FAIRsharing.org: DroSpeGe; Drosophila Species Genomes; DOI: https://doi.org/10.25504/FAIRsharing.me577e; Last edited: April 26, 2021, 8:18 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
The D. melanogaster and eight other eukaryote model genomes, and gene predictions from several groups. Summaries of essential genome statistics include sizes, genes found and predicted, homology among genomes, phylogenetic trees of species, and comparisons of several gene predictions for sensitivity and specificity in finding new and known genes.
Description
More detailed information about this field from each metasource.
The D. melanogaster and eight other eukaryote model genomes, and gene predictions from several groups. Summaries of essential genome statistics include sizes, genes found and predicted, homology among genomes, phylogenetic trees of species, and comparisons of several gene predictions for sensitivity and specificity in finding new and known genes.
metasource: Fairsharing.orgversion: FAIRsharing.org: DroSpeGe; Drosophila Species Genomes; DOI: https://doi.org/10.25504/FAIRsharing.me577e; Last edited: April 26, 2021, 8:18 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
The Drosophila species comparative genome database DroSpeGe (URL: http://insects.eugenes.org/DroSpeGe/) provides genome researchers with rapid, usable access to twelve new and old Drosophila genomes, since its inception in 2004. Scientists can use, with minimal computing expertise, the wealth of new genome information for developing new insights into insect evolution. New genome assemblies provided by several sequencing centers have been annotated with known model organism gene homologies and gene predictions to provided basic comparative data. TeraGrid supplies the shared cyberinfrastructure for the primary computations. This genome database includes homologies to D. melanogaster and eight other eukaryote model genomes, and gene predictions from several groups. BLAST searches of the newest assemblies are integrated with genome maps. GBrowse maps provide detailed views of cross-species aligned genomes. BioMart provides for data mining of annotations and sequences. Common chromosome maps identify major synteny among species. Potential gain and loss of genes is suggested by Gene Ontology groupings for genes of the new species. Summaries of essential genome statistics include sizes, genes found and predicted, homology among genomes, phylogenetic trees of species, and comparisons of several gene predictions for sensitivity and specificity in finding new and known genes.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://insects.eugenes.org/DroSpeGe/Webpage
More detailed information about this field from each metasource.
http://insects.eugenes.org/DroSpeGe/
metasource: Fairsharing.orgversion: FAIRsharing.org: DroSpeGe; Drosophila Species Genomes; DOI: https://doi.org/10.25504/FAIRsharing.me577e; Last edited: April 26, 2021, 8:18 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
More detailed information about this field from each metasource.
DroSpeGe: rapid access database for new Drosophila species genomes
PMID: 17202166
metasource: Fairsharing.org
version: FAIRsharing.org: DroSpeGe; Drosophila Species Genomes; DOI: https://doi.org/10.25504/FAIRsharing.me577e; Last edited: April 26, 2021, 8:18 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications
More detailed information about this field from each metasource.
DroSpeGe: rapid access database for new Drosophila species genomes
PMID: 17202166
metasource: Fairsharing.org
version: FAIRsharing.org: DroSpeGe; Drosophila Species Genomes; DOI: https://doi.org/10.25504/FAIRsharing.me577e; Last edited: April 26, 2021, 8:18 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
-
DroSpeGe: rapid access database for new Drosophila species genomes
PubMed citations: 24.
24 articles citing: DroSpeGe: rapid access database for new Drosophila species genomes
"What You Need, Baby, I Got It": Transposable Elements as Suppliers of Cis-Operating Sequences in Drosophila. PMID:32028630
Assessing the Architecture of Drosophila mojavensis Locomotor Evolution with Bulk Segregant Analysis. PMID:30926724
Tetrahymena Comparative Genomics Database (TCGD): a community resource for Tetrahymena. PMID:30810209
Identification of genes related to high royal jelly production in the honey bee (Apis mellifera) using microarray analysis. PMID:28981563
Effects of temperature on transcriptome and cuticular hydrocarbon expression in ecologically differentiated populations of desert Drosophila. PMID:28116058
A comprehensive reference transcriptome resource for the common house spider Parasteatoda tepidariorum. PMID:25118601
Immune-directed support of rich microbial communities in the gut has ancient roots. PMID:24984114
Rearrangements of 2.5 kilobases of noncoding DNA from the Drosophila even-skipped locus define predictive rules of genomic cis-regulatory logic. PMID:23468638
Segmental duplication, microinversion, and gene loss associated with a complex inversion breakpoint region in Drosophila. PMID:22328714
The 19 genomes of Drosophila: a BAC library resource for genus-wide and genome-scale comparative evolutionary research. PMID:21321134
Characterization of maltase clusters in the genus Drosophila. PMID:21082169
Some novel intron positions in conserved Drosophila genes are caused by intron sliding or tandem duplication. PMID:20500887
Large introns in relation to alternative splicing and gene evolution: a case study of Drosophila bruno-3. PMID:19840385
reduced ocelli encodes the leucine rich repeat protein Pray For Elves in Drosophila melanogaster. PMID:18820435
Molecular evolution of neuropeptides in the genus Drosophila. PMID:18717992
Reverse-engineering a transcriptional enhancer: a case study in Drosophila. PMID:18687053
Sequence signatures of a recent chromosomal rearrangement in Drosophila mojavensis. PMID:18661244
Divergence between the Drosophila pseudoobscura and D. persimilis genome sequences in relation to chromosomal inversions. PMID:18039875
Drosophila biology in the genomic age. PMID:18039866
Global patterns of sequence evolution in Drosophila. PMID:17996078
Drosophila telomeric retrotransposons derived from an ancestral element that was recruited to replace telomerase. PMID:17989257
Genetic analysis of female mating recognition between Drosophila ananassae and Drosophila pallidosa: application of interspecific mosaic genome lines. PMID:17768595
Evaluation of the genomic extent of effects of fixed inversion differences on intraspecific variation and interspecific gene flow in Drosophila pseudoobscura and D. persimilis. PMID:17179068
A phylogenetic generalized hidden Markov model for predicting alternatively spliced exons. PMID:16934144
Tags:
Tags
More detailed information about this field from each metasource.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: DroSpeGe; Drosophila Species Genomes; DOI: https://doi.org/10.25504/FAIRsharing.me577e; Last edited: April 26, 2021, 8:18 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene prediction
metasource: Fairsharing.org
version: FAIRsharing.org: DroSpeGe; Drosophila Species Genomes; DOI: https://doi.org/10.25504/FAIRsharing.me577e; Last edited: April 26, 2021, 8:18 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: DroSpeGe; Drosophila Species Genomes; DOI: https://doi.org/10.25504/FAIRsharing.me577e; Last edited: April 26, 2021, 8:18 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
homologous
metasource: Fairsharing.org
version: FAIRsharing.org: DroSpeGe; Drosophila Species Genomes; DOI: https://doi.org/10.25504/FAIRsharing.me577e; Last edited: April 26, 2021, 8:18 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
orthologous
metasource: Fairsharing.org
version: FAIRsharing.org: DroSpeGe; Drosophila Species Genomes; DOI: https://doi.org/10.25504/FAIRsharing.me577e; Last edited: April 26, 2021, 8:18 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
invertebrate genome databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: DroSpeGe; Drosophila Species Genomes; DOI: https://doi.org/10.25504/FAIRsharing.me577e; Last edited: April 26, 2021, 8:18 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene prediction
metasource: Fairsharing.orgversion: FAIRsharing.org: DroSpeGe; Drosophila Species Genomes; DOI: https://doi.org/10.25504/FAIRsharing.me577e; Last edited: April 26, 2021, 8:18 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: DroSpeGe; Drosophila Species Genomes; DOI: https://doi.org/10.25504/FAIRsharing.me577e; Last edited: April 26, 2021, 8:18 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
homologous
metasource: Fairsharing.orgversion: FAIRsharing.org: DroSpeGe; Drosophila Species Genomes; DOI: https://doi.org/10.25504/FAIRsharing.me577e; Last edited: April 26, 2021, 8:18 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
orthologous
metasource: Fairsharing.orgversion: FAIRsharing.org: DroSpeGe; Drosophila Species Genomes; DOI: https://doi.org/10.25504/FAIRsharing.me577e; Last edited: April 26, 2021, 8:18 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
invertebrate genome databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
gene gene prediction genome homologous orthology genomics invertebrate genome
Need help integrating and/or managing biomedical data?