CryptoDB
Names
More detailed information about this field from each metasource.
CryptoDB
metasource: Fairsharing.org
version: FAIRsharing.org: CryptoDB; CryptoDB; DOI: https://doi.org/10.25504/FAIRsharing.t3nprm; Last edited: March 1, 2021, 4:24 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
Cryptosporidium genome resources CryptoDB
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:40.876907
cryptodb
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:40.876907
Names
More detailed information about this field from each metasource.
CryptoDB
metasource: Fairsharing.orgversion: FAIRsharing.org: CryptoDB; CryptoDB; DOI: https://doi.org/10.25504/FAIRsharing.t3nprm; Last edited: March 1, 2021, 4:24 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
Cryptosporidium genome resources CryptoDB
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:40.876907
cryptodb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:40.876907
Other names: Cryptosporidium genome resources CryptoDB, cryptodb
Names
More detailed information about this field from each metasource.
CryptoDB
metasource: Fairsharing.orgversion: FAIRsharing.org: CryptoDB; CryptoDB; DOI: https://doi.org/10.25504/FAIRsharing.t3nprm; Last edited: March 1, 2021, 4:24 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
Cryptosporidium genome resources CryptoDB
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:40.876907
cryptodb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:40.876907
CryptoDB serves as the functional genomics database for Cryptosporidium and related species. CryptoDB is a free, online resource for accessing and exploring genome sequence and annotation, functional genomics data, isolate sequences, and orthology profiles across organisms. It also includes supplemental bioinformatics analyses and a web interface for data-mining.
Description
More detailed information about this field from each metasource.
CryptoDB serves as the functional genomics database for Cryptosporidium and related species. CryptoDB is a free, online resource for accessing and exploring genome sequence and annotation, functional genomics data, isolate sequences, and orthology profiles across organisms. It also includes supplemental bioinformatics analyses and a web interface for data-mining.
metasource: Fairsharing.orgversion: FAIRsharing.org: CryptoDB; CryptoDB; DOI: https://doi.org/10.25504/FAIRsharing.t3nprm; Last edited: March 1, 2021, 4:24 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
CryptoDB is an integrated genomic and functional genomic database for the parasite Cryptosporidium and other related genera. CryptoDB integrates whole genome sequence and annotation along with experimental data and environmental isolate sequences provided by community researchers. The database includes supplemental bioinformatics analyses and a web interface for data-mining.
metasource: re3data.orgversion: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
Genomic-scale dataset associated with the eukaryotic pathogens Cryptosporidium.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:40.876907
Webpage:
https://cryptodb.org/cryptodb/appWebpage
More detailed information about this field from each metasource.
https://cryptodb.org/cryptodb/app
metasource: Fairsharing.orgversion: FAIRsharing.org: CryptoDB; CryptoDB; DOI: https://doi.org/10.25504/FAIRsharing.t3nprm; Last edited: March 1, 2021, 4:24 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
http://cryptodb.org/cryptodb/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:40.876907
Licence:
Name: VEuPathDB Data Submission and Release PoliciesLicence name
More detailed information about this field from each metasource.
VEuPathDB Data Submission and Release Policies
metasource: Fairsharing.orgversion: FAIRsharing.org: CryptoDB; CryptoDB; DOI: https://doi.org/10.25504/FAIRsharing.t3nprm; Last edited: March 1, 2021, 4:24 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Public Domain
metasource: re3data.orgversion: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
https://static-content.veupathdb.org/documents/VEuPathDB_Data_Sub_Release_policy_rev_02April2020.pdf
metasource: Fairsharing.orgversion: FAIRsharing.org: CryptoDB; CryptoDB; DOI: https://doi.org/10.25504/FAIRsharing.t3nprm; Last edited: March 1, 2021, 4:24 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://cryptodb.org/cryptodb/showXmlDataContent.do?name=XmlQuestions.About
metasource: re3data.orgversion: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
CryptoDB: a Cryptosporidium bioinformatics resource update
PMID: 16381902
metasource: Fairsharing.org
version: FAIRsharing.org: CryptoDB; CryptoDB; DOI: https://doi.org/10.25504/FAIRsharing.t3nprm; Last edited: March 1, 2021, 4:24 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:40.876907
Accessing Cryptosporidium Omic and Isolate Data via CryptoDB.org
PMID: 31452162
metasource: Fairsharing.org
version: FAIRsharing.org: CryptoDB; CryptoDB; DOI: https://doi.org/10.25504/FAIRsharing.t3nprm; Last edited: March 1, 2021, 4:24 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Publications
More detailed information about this field from each metasource.
CryptoDB: a Cryptosporidium bioinformatics resource update
PMID: 16381902
metasource: Fairsharing.org
version: FAIRsharing.org: CryptoDB; CryptoDB; DOI: https://doi.org/10.25504/FAIRsharing.t3nprm; Last edited: March 1, 2021, 4:24 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:40.876907
Accessing Cryptosporidium Omic and Isolate Data via CryptoDB.org
PMID: 31452162
metasource: Fairsharing.org
version: FAIRsharing.org: CryptoDB; CryptoDB; DOI: https://doi.org/10.25504/FAIRsharing.t3nprm; Last edited: March 1, 2021, 4:24 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
-
CryptoDB: a Cryptosporidium bioinformatics resource update
PubMed citations: 74.
74 articles citing: CryptoDB: a Cryptosporidium bioinformatics resource update
An update on Cryptosporidium biology and therapeutic avenues. PMID:35755159
Global Population Genomics of Two Subspecies of Cryptosporidium hominis during 500 Years of Evolution. PMID:35302613
Long-read assembly and comparative evidence-based reanalysis of Cryptosporidium genome sequences reveal expanded transporter repertoire and duplication of entire chromosome ends including subtelomeric regions. PMID:34764149
Cryptosporidium spp. diagnosis and research in the 21st century. PMID:34471706
Megasphaera in the Stool Microbiota Is Negatively Associated With Diarrheal Cryptosporidiosis. PMID:33684930
Comparative genomics revealed adaptive admixture in Cryptosporidium hominis in Africa. PMID:33355530
Phosphoglycerate kinase: structural aspects and functions, with special emphasis on the enzyme from Kinetoplastea. PMID:33234025
Comparative analyses and structural insights of new class glutathione transferases in Cryptosporidium species. PMID:33230237
A Comprehensive Subcellular Atlas of the Toxoplasma Proteome via hyperLOPIT Provides Spatial Context for Protein Functions. PMID:33053376
A doublecortin-domain protein of Toxoplasma and its orthologues bind to and modify the structure and organization of tubulin polymers. PMID:32111164
Cryptosporidium spp.: Human incidence, molecular characterization and associated exposures in Québec, Canada (2016-2017). PMID:32053684
Direct Sequencing of Cryptosporidium in Stool Samples for Public Health. PMID:31921734
Cryptosporidium parvum Elongation Factor 1α Participates in the Formation of Base Structure at the Infection Site During Invasion. PMID:31872225
Comparative genomics: how has it advanced our knowledge of cryptosporidiosis epidemiology? PMID:31724068
Cross-Kingdom Analysis of Diversity, Evolutionary History, and Site Selection within the Eukaryotic Macrophage Migration Inhibitory Factor Superfamily. PMID:31554205
ApicoTFdb: the comprehensive web repository of apicomplexan transcription factors and transcription-associated co-factors. PMID:31529106
A Genetically Tractable, Natural Mouse Model of Cryptosporidiosis Offers Insights into Host Protective Immunity. PMID:31231045
The transcriptome of Cryptosporidium oocysts and intracellular stages. PMID:31133645
Alternative Splicing in Apicomplexan Parasites. PMID:30782661
Past and future trends of Cryptosporidium in vitro research. PMID:30521793
Polyamines in protozoan pathogens. PMID:30333232
Modelling Cryptosporidium infection in human small intestinal and lung organoids. PMID:29946163
Localization of Fe-S Biosynthesis Machinery in Cryptosporidium parvum Mitosome. PMID:29932290
Transcriptome analysis of pig intestinal cell monolayers infected with Cryptosporidium parvum asexual stages. PMID:29530089
Diverse single-amino-acid repeat profiles in the genus Cryptosporidium. PMID:29429420
Enrichment of Cryptosporidium parvum from in vitro culture as measured by total RNA and subsequent sequence analysis. PMID:29292212
Use of a bioinformatic-assisted primer design strategy to establish a new nested PCR-based method for Cryptosporidium. PMID:29061171
Cryptosporidium parvum vaccine candidates are incompletely modified with O-linked-N-acetylgalactosamine or contain N-terminal N-myristate and S-palmitate. PMID:28792526
In silico identification and validation of a novel hypothetical protein in Cryptosporidium hominis and virtual screening of inhibitors as therapeutics. PMID:28389892
Asparagine-Linked Glycans of Cryptosporidium parvum Contain a Single Long Arm, Are Barely Processed in the Endoplasmic Reticulum (ER) or Golgi, and Show a Strong Bias for Sites with Threonine. PMID:28179475
Cryptosporidium hominis gene catalog: a resource for the selection of novel Cryptosporidium vaccine candidates. PMID:28095366
Wider than Thought Phylogenetic Occurrence of Apicortin, A Characteristic Protein of Apicomplexan Parasites. PMID:27282556
Databases for Microbiologists. PMID:26013493
A large-scale proteogenomics study of apicomplexan pathogens-Toxoplasma gondii and Neospora caninum. PMID:25867681
DB-AT: a 2015 update to the Full-parasites database brings a multitude of new transcriptomic data for apicomplexan parasites. PMID:25414358
An atomic-resolution view of neofunctionalization in the evolution of apicomplexan lactate dehydrogenases. PMID:24966208
A survey of innovation through duplication in the reduced genomes of twelve parasites. PMID:24919110
kdetrees: Non-parametric estimation of phylogenetic tree distributions. PMID:24764459
A cysteine protease inhibitor rescues mice from a lethal Cryptosporidium parvum infection. PMID:24060869
Identification of a family of four UDP-polypeptide N-acetylgalactosaminyl transferases in Cryptosporidium species. PMID:23954365
Interaction of Cryptosporidium parvum with mouse dendritic cells leads to their activation and parasite transportation to mesenteric lymph nodes. PMID:23913680
Identification and characterization of Cryptosporidium parvum Clec, a novel C-type lectin domain-containing mucin-like glycoprotein. PMID:23817613
Sporozoite proteome analysis of Cryptosporidium parvum by one-dimensional SDS-PAGE and liquid chromatography tandem mass spectrometry. PMID:23814469
Library of Apicomplexan Metabolic Pathways: a manually curated database for metabolic pathways of apicomplexan parasites. PMID:23193253
EuPathDB: the eukaryotic pathogen database. PMID:23175615
Distribution of the SELMA translocon in secondary plastids of red algal origin and predicted uncoupling of ubiquitin-dependent translocation from degradation. PMID:23042132
Parasites, proteomes and systems: has Descartes' clock run out of time? PMID:22828391
The Cryptosporidium parvum transcriptome during in vitro development. PMID:22438867
Tetrahymena Genome Database Wiki: a community-maintained model organism database. PMID:22434841
Identification of a new rhoptry neck complex RON9/RON10 in the Apicomplexa parasite Toxoplasma gondii. PMID:22427839
An SNP selection strategy identified IL-22 associating with susceptibility to tuberculosis in Chinese. PMID:22355539
The state of research for AIDS-associated opportunistic infections and the importance of sustaining smaller research communities. PMID:22158712
Peroxiredoxins in parasites. PMID:22098136
Structural and evolutionary divergence of eukaryotic protein kinases in Apicomplexa. PMID:22047078
The Cryptosporidium parvum kinome. PMID:21962082
Phylogenomic analyses of malaria parasites and evolution of their exported proteins. PMID:21676252
Jumbled genomes: missing Apicomplexan synteny. PMID:21504890
AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species. PMID:20974635
EuPathDB: a portal to eukaryotic pathogen databases. PMID:19914931
InParanoid 7: new algorithms and tools for eukaryotic orthology analysis. PMID:19892828
Inconsistencies of genome annotations in apicomplexan parasites revealed by 5'-end-one-pass and full-length sequences of oligo-capped cDNAs. PMID:19602295
A kernel for open source drug discovery in tropical diseases. PMID:19381286
Role of CpSUB1, a subtilisin-like protease, in Cryptosporidium parvum infection in vitro. PMID:19168760
metaTIGER: a metabolic evolution resource. PMID:18953037
MODBASE, a database of annotated comparative protein structure models and associated resources. PMID:18948282
GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis. PMID:18824479
The Apicomplexan whole-genome phylogeny: an analysis of incongruence among gene trees. PMID:18820254
Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation. PMID:18416670
Consistent and contrasting properties of lineage-specific genes in the apicomplexan parasites Plasmodium and Theileria. PMID:18405380
Determining the protein repertoire of Cryptosporidium parvum sporozoites. PMID:18306179
Host pathogen protein interactions predicted by comparative modeling. PMID:17965183
TBestDB: a taxonomically broad database of expressed sequence tags (ESTs). PMID:17202165
Integration and mining of malaria molecular, functional and pharmacological data: how far are we from a chemogenomic knowledge space? PMID:17112376
ApiDB: integrated resources for the apicomplexan bioinformatics resource center. PMID:17098930 -
Accessing Cryptosporidium Omic and Isolate Data via CryptoDB.org
PubMed citations: 4.
4 articles citing: Accessing Cryptosporidium Omic and Isolate Data via CryptoDB.org
An update on Cryptosporidium biology and therapeutic avenues. PMID:35755159
Paving the Way: Contributions of Big Data to Apicomplexan and Kinetoplastid Research. PMID:35734575
The Long and Short of Next Generation Sequencing for Cryptosporidium Research. PMID:35419299
Update on Cryptosporidium spp.: highlights from the Seventh International Giardia and Cryptosporidium Conference. PMID:32167464
Tags:
Tags
More detailed information about this field from each metasource.
gene functional annotation
metasource: Fairsharing.org
version: FAIRsharing.org: CryptoDB; CryptoDB; DOI: https://doi.org/10.25504/FAIRsharing.t3nprm; Last edited: March 1, 2021, 4:24 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: CryptoDB; CryptoDB; DOI: https://doi.org/10.25504/FAIRsharing.t3nprm; Last edited: March 1, 2021, 4:24 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genome annotation
metasource: Fairsharing.org
version: FAIRsharing.org: CryptoDB; CryptoDB; DOI: https://doi.org/10.25504/FAIRsharing.t3nprm; Last edited: March 1, 2021, 4:24 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
parasite
metasource: Fairsharing.org
version: FAIRsharing.org: CryptoDB; CryptoDB; DOI: https://doi.org/10.25504/FAIRsharing.t3nprm; Last edited: March 1, 2021, 4:24 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
dna
metasource: re3data.org
version: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
fair
metasource: re3data.org
version: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
enzyme
metasource: re3data.org
version: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
genetic
metasource: re3data.org
version: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
immunology
metasource: re3data.org
version: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
metabolic pathways
metasource: re3data.org
version: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
metabolomics
metasource: re3data.org
version: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
ontology
metasource: re3data.org
version: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
protein expression
metasource: re3data.org
version: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
terminology
metasource: re3data.org
version: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:40.876907
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:40.876907
Tags
More detailed information about this field from each metasource.
gene functional annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: CryptoDB; CryptoDB; DOI: https://doi.org/10.25504/FAIRsharing.t3nprm; Last edited: March 1, 2021, 4:24 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: CryptoDB; CryptoDB; DOI: https://doi.org/10.25504/FAIRsharing.t3nprm; Last edited: March 1, 2021, 4:24 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genome annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: CryptoDB; CryptoDB; DOI: https://doi.org/10.25504/FAIRsharing.t3nprm; Last edited: March 1, 2021, 4:24 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
parasite
metasource: Fairsharing.orgversion: FAIRsharing.org: CryptoDB; CryptoDB; DOI: https://doi.org/10.25504/FAIRsharing.t3nprm; Last edited: March 1, 2021, 4:24 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
dna
metasource: re3data.orgversion: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
fair
metasource: re3data.orgversion: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
enzyme
metasource: re3data.orgversion: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
genetic
metasource: re3data.orgversion: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
immunology
metasource: re3data.orgversion: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
metabolic pathways
metasource: re3data.orgversion: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
metabolomics
metasource: re3data.orgversion: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
ontology
metasource: re3data.orgversion: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
protein expression
metasource: re3data.orgversion: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
terminology
metasource: re3data.orgversion: re3data.org: CryptoDB; editing status 2021-09-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35M1X last accessed: 2022-11-04
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:40.876907
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:40.876907
gene functional annotation genome genome annotation parasite dna enzyme genetic immunology metabolic and signaling pathways metabolomics ontology protein expression terminology model organisms
Need help integrating and/or managing biomedical data?