Banana Genome Hub
Names
More detailed information about this field from each metasource.
Banana Genome Hub
metasource: Fairsharing.org
version: FAIRsharing.org: BGH; Banana Genome Hub; DOI: https://doi.org/10.25504/FAIRsharing.p90p8q; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:00.437725
BGH
metasource: Fairsharing.org
version: FAIRsharing.org: BGH; Banana Genome Hub; DOI: https://doi.org/10.25504/FAIRsharing.p90p8q; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Banana_Genome_Hub
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:00.437725
Names
More detailed information about this field from each metasource.
Banana Genome Hub
metasource: Fairsharing.orgversion: FAIRsharing.org: BGH; Banana Genome Hub; DOI: https://doi.org/10.25504/FAIRsharing.p90p8q; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:00.437725
BGH
metasource: Fairsharing.orgversion: FAIRsharing.org: BGH; Banana Genome Hub; DOI: https://doi.org/10.25504/FAIRsharing.p90p8q; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Banana_Genome_Hub
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:00.437725
Other names: BGH, Banana_Genome_Hub
Names
More detailed information about this field from each metasource.
Banana Genome Hub
metasource: Fairsharing.orgversion: FAIRsharing.org: BGH; Banana Genome Hub; DOI: https://doi.org/10.25504/FAIRsharing.p90p8q; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:00.437725
BGH
metasource: Fairsharing.orgversion: FAIRsharing.org: BGH; Banana Genome Hub; DOI: https://doi.org/10.25504/FAIRsharing.p90p8q; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Banana_Genome_Hub
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:00.437725
The Banana Genome Hub centralises databases of genetic and genomic data for the Musa acuminata crop, and is the official portal for the Musa genome resources.
Description
More detailed information about this field from each metasource.
The Banana Genome Hub centralises databases of genetic and genomic data for the Musa acuminata crop, and is the official portal for the Musa genome resources.
metasource: Fairsharing.orgversion: FAIRsharing.org: BGH; Banana Genome Hub; DOI: https://doi.org/10.25504/FAIRsharing.p90p8q; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
A Next-Generation Information System for Musa genomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:00.437725
Webpage:
http://banana-genome-hub.southgreen.fr/Webpage
More detailed information about this field from each metasource.
http://banana-genome-hub.southgreen.fr/
metasource: Fairsharing.orgversion: FAIRsharing.org: BGH; Banana Genome Hub; DOI: https://doi.org/10.25504/FAIRsharing.p90p8q; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
https://banana-genome-hub.southgreen.fr/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:00.437725
Licence:
Name: GPL-2.0Licence name
More detailed information about this field from each metasource.
Publications:
Publications
More detailed information about this field from each metasource.
The banana genome hub
PMID: 23707967
metasource: Fairsharing.org
version: FAIRsharing.org: BGH; Banana Genome Hub; DOI: https://doi.org/10.25504/FAIRsharing.p90p8q; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://dx.doi.org/10.1093/database/bat035
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:00.437725
http://dx.doi.org/10.1038/nature11241
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:00.437725
Publications
More detailed information about this field from each metasource.
The banana genome hub
PMID: 23707967
metasource: Fairsharing.org
version: FAIRsharing.org: BGH; Banana Genome Hub; DOI: https://doi.org/10.25504/FAIRsharing.p90p8q; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://dx.doi.org/10.1093/database/bat035
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:00.437725
http://dx.doi.org/10.1038/nature11241
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:00.437725
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The banana genome hub
PubMed citations: 73.
73 articles citing: The banana genome hub
LSAP: A Machine Learning Method for Leaf-Senescence-Associated Genes Prediction. PMID:35888183
Genome Assembly and Analysis of the Flavonoid and Phenylpropanoid Biosynthetic Pathways in Fingerroot Ginger (Boesenbergia rotunda). PMID:35806276
Genome-wide identification and characterization of glutathione S-transferase gene family in Musa acuminata L. AAA group and gaining an insight to their role in banana fruit development. PMID:35689012
A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae. PMID:35488861
Genome-wide identification, characterization of expansin gene family of banana and their expression pattern under various stresses. PMID:35463044
A Systematic Phylogenomic Classification of the Multidrug and Toxic Compound Extrusion Transporter Gene Family in Plants. PMID:35371145
Impacts of the Biocontrol Strain Pseudomonas simiae PICF7 on the Banana Holobiont: Alteration of Root Microbial Co-occurrence Networks and Effect on Host Defense Responses. PMID:35242117
Improved High-Quality Genome Assembly and Annotation of Pineapple (Ananas comosus) Cultivar MD2 Revealed Extensive Haplotype Diversity and Diversified FRS/FRF Gene Family. PMID:35052394
Genome-wide in silico characterization and stress induced expression analysis of BcL-2 associated athanogene (BAG) family in Musa spp. PMID:35022483
Evolution of 14-3-3 Proteins in Angiosperm Plants: Recurring Gene Duplication and Loss. PMID:34961196
Genomic Approaches for Improvement of Tropical Fruits: Fruit Quality, Shelf Life and Nutrient Content. PMID:34946829
A polyketide synthase gene cluster required for pathogenicity of Pseudocercospora fijiensis on banana. PMID:34705882
Panache: a Web Browser-Based Viewer for Linearized Pangenomes. PMID:34601567
Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing. PMID:34493830
Genome-wide identification of DCL, AGO and RDR gene families and their associated functional regulatory elements analyses in banana (Musa acuminata). PMID:34473743
Haplotype-resolved genome assembly and allele-specific gene expression in cultivated ginger. PMID:34354050
Comparative transcriptome analysis of unripe and ripe banana (cv. Nendran) unraveling genes involved in ripening and other related processes. PMID:34314413
Decoding the molecular mechanism of parthenocarpy in Musa spp. through protein-protein interaction network. PMID:34272422
Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases. PMID:34251419
Genetic diversity and structure of Musa balbisiana populations in Vietnam and its implications for the conservation of banana crop wild relatives. PMID:34161368
Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis. PMID:33452249
CorkOakDB-The Cork Oak Genome Database Portal. PMID:33382885
Origin and evolution of a gibberellin-deactivating enzyme GAMT. PMID:33376939
Should Starch Metabolism Be a Key Point of the Climacteric vs. Non-climacteric Fruit Definition? PMID:33343608
Genome sequencing data for wild and cultivated bananas, plantains and abacá. PMID:33072825
The R2R3-MYB gene family in banana (Musa acuminata): Genome-wide identification, classification and expression patterns. PMID:33021974
Family-Specific Gains and Losses of Protein Domains in the Legume and Grass Plant Families. PMID:32694909
Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases. PMID:32621602
Full-length transcriptome sequencing provides insights into the evolution of apocarotenoid biosynthesis in Crocus sativus. PMID:32280432
Genome-Wide Identification and Comparative Analysis of MYB Transcription Factor Family in Musa acuminata and Musa balbisiana. PMID:32230872
Unravelling the complex story of intergenomic recombination in ABB allotriploid bananas. PMID:32104882
Genome ancestry mosaics reveal multiple and cryptic contributors to cultivated banana. PMID:31930580
Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databases. PMID:31725859
Genome-wide identification and interactome analysis of members of two-component system in Banana. PMID:31455217
A polyketide synthase gene cluster associated with the sexual reproductive cycle of the banana pathogen, Pseudocercospora fijiensis. PMID:31344104
Two large reciprocal translocations characterized in the disease resistance-rich burmannica genetic group of Musa acuminata. PMID:31241133
Transcriptomic analysis of resistant and susceptible banana corms in response to infection by Fusarium oxysporum f. sp. cubense tropical race 4. PMID:31160634
Genome-wide characterization of a SRO gene family involved in response to biotic and abiotic stresses in banana (Musa spp.). PMID:31113386
Molecular Basis of Disease Resistance in Banana Progenitor Musa balbisiana against Xanthomonas campestris pv. musacearum. PMID:31065041
Effect of paleopolyploidy and allopolyploidy on gene expression in banana. PMID:30917780
A novel polyketide synthase gene cluster in the plant pathogenic fungus Pseudocercospora fijiensis. PMID:30735556
CRISPR/Cas9 editing of endogenous banana streak virus in the B genome of Musa spp. overcomes a major challenge in banana breeding. PMID:30729184
Glycosyltransferase Family 61 in Liliopsida (Monocot): The Story of a Gene Family Expansion. PMID:30619412
Homeolog expression analysis in an allotriploid non-model crop via integration of transcriptomics and proteomics. PMID:29358676
MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data. PMID:29220435
Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination. PMID:28927400
Evolutionarily Conserved Alternative Splicing Across Monocots. PMID:28839042
Identification of Biomarkers for Resistance to Fusarium oxysporum f. sp. cubense Infection and in Silico Studies in Musa paradisiaca Cultivar Puttabale through Proteomic Approach. PMID:28248219
ATGC transcriptomics: a web-based application to integrate, explore and analyze de novo transcriptomic data. PMID:28222698
Duplicates, redundancies and inconsistencies in the primary nucleotide databases: a descriptive study. PMID:28077566
blend4php: a PHP API for galaxy. PMID:28077564
Lineage-Specific Evolutionary Histories and Regulation of Major Starch Metabolism Genes during Banana Ripening. PMID:27994606
Whole genome sequencing of a banana wild relative Musa itinerans provides insights into lineage-specific diversification of the Musa genus. PMID:27531320
Supervised Learning for Detection of Duplicates in Genomic Sequence Databases. PMID:27489953
Bioinformatics Prediction of Polyketide Synthase Gene Clusters from Mycosphaerella fijiensis. PMID:27388157
A Genome-Wide Association Study on the Seedless Phenotype in Banana (Musa spp.) Reveals the Potential of a Selected Panel to Detect Candidate Genes in a Vegetatively Propagated Crop. PMID:27144345
Molecular Characterization of MaCCS, a Novel Copper Chaperone Gene Involved in Abiotic and Hormonal Stress Responses in Musa acuminata cv. Tianbaojiao. PMID:27023517
Database of predicted SCAR markers in five fruit and three vegetable crops. PMID:27019446
Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado. PMID:26989146
Improvement of the banana "Musa acuminata" reference sequence using NGS data and semi-automated bioinformatics methods. PMID:26984673
Differential root transcriptomics in a polyploid non-model crop: the importance of respiration during osmotic stress. PMID:26935041
Genome-wide analysis of the AP2/ERF family in Musa species reveals divergence and neofunctionalisation during evolution. PMID:26733055
GREENC: a Wiki-based database of plant lncRNAs. PMID:26578586
Genome-wide identification and characterization of the superoxide dismutase gene family in Musa acuminata cv. Tianbaojiao (AAA group). PMID:26486759
Comprehensive Evolutionary and Expression Analysis of FCS-Like Zinc finger Gene Family Yields Insights into Their Origin, Expansion and Divergence. PMID:26252898
Data for the characterization of the HSP70 family during osmotic stress in banana, a non-model crop. PMID:26217722
Transcriptome analysis of ripe and unripe fruit tissue of banana identifies major metabolic networks involved in fruit ripening process. PMID:25442405
The coffee genome hub: a resource for coffee genomes. PMID:25392413
Genomic analysis of NAC transcription factors in banana (Musa acuminata) and definition of NAC orthologous groups for monocots and dicots. PMID:24570169
Plant defense response against Fusarium oxysporum and strategies to develop tolerant genotypes in banana. PMID:24420701
MEGANTE: a web-based system for integrated plant genome annotation. PMID:24253915
CottonGen: a genomics, genetics and breeding database for cotton research. PMID:24203703
Tripal v1.1: a standards-based toolkit for construction of online genetic and genomic databases. PMID:24163125 - http://dx.doi.org/10.1093/database/bat035
- http://dx.doi.org/10.1038/nature11241
Tags:
Tags
More detailed information about this field from each metasource.
gene ontology enrichment
metasource: Fairsharing.org
version: FAIRsharing.org: BGH; Banana Genome Hub; DOI: https://doi.org/10.25504/FAIRsharing.p90p8q; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: BGH; Banana Genome Hub; DOI: https://doi.org/10.25504/FAIRsharing.p90p8q; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genome annotation
metasource: Fairsharing.org
version: FAIRsharing.org: BGH; Banana Genome Hub; DOI: https://doi.org/10.25504/FAIRsharing.p90p8q; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:00.437725
genomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:00.437725
transcriptomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:00.437725
agricultural science
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:00.437725
comparative genomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:00.437725
Tags
More detailed information about this field from each metasource.
gene ontology enrichment
metasource: Fairsharing.orgversion: FAIRsharing.org: BGH; Banana Genome Hub; DOI: https://doi.org/10.25504/FAIRsharing.p90p8q; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: BGH; Banana Genome Hub; DOI: https://doi.org/10.25504/FAIRsharing.p90p8q; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genome annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: BGH; Banana Genome Hub; DOI: https://doi.org/10.25504/FAIRsharing.p90p8q; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:00.437725
genomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:00.437725
transcriptomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:00.437725
agricultural science
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:00.437725
comparative genomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:00.437725
gene ontology enrichment genome genome annotation model organisms genomics transcriptomics agricultural science comparative genomics
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