Source | Match | ReputationScore* |
---|---|---|
F-SNP
Functional effects of various human SNPs
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1 |
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HapMap Project
The SNP Consortium website (http://snp.cshl.org) has undergone many changes since its initial conception three years ago. The database back end has been changed from the venerable ACeDB to the more scalable MySQL engine. Users can access the data via
...
|
2 |
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Dog Genome SNP Database
Dog Genome SNP Database (DoGSD) is a data container for the variation information of dog/wolf genomes. It was designed and constructed as an SNPs detector and visualization tool to provide the research community a useful resource for the study of dog
...
|
3 |
|
lncRNASNP
lncRNASNP is an integrated database of SNPs in lncRNAs and their potential functions in human and mouse. It integrated several public databases and tools, including LNCipedia, NONCODE, dbSNP, miRBase, TCGA and so on. Its aim is to provide information
...
|
4 |
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HaploReg
HaploReg is a tool for exploring annotations of the noncoding genome at variants on haplotype blocks, such as candidate regulatory SNPs at disease-associated loci. Using LD information from the 1000 Genomes Project, linked SNPs and small indels can b
...
|
5 |
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TopoSNP
Topographic database of non-synonymous SNPs
|
6 |
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SNPlogic
Interactive SNP annotation, selection and prioritization system for genotyping projects and/or analysis and interpretation of SNP data.
|
7 |
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Genome-Wide Association Studies Catalog
The Genome-Wide Association Studies (GWAS) Catalog provides a consistent, searchable, visualisable and freely available database of published SNP-trait associations, which can be easily integrated with other resources, and is accessed by scientists,
...
|
8 |
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3DSNP
3DSNP is a database for comprehensively annotating the regulatory function of human noncoding SNPs by exploring their 3D interactions with genes and genetically associated SNPs mediated by chromatin loops. 3DSNP integrates Hi-C data together with a v
...
|
9 |
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CaSNP
Cancer SNP data on copy number alterations
|
10 |
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SNPSTR
The SNPSTR database contains the SNP-STR/microsatellite compound markers in the five model species, where sufficient SNP information exists in both of the NCBI and Ensembl databases. These species are human (Homo sapiens), mouse (Mus musculus), rat (
...
|
11 |
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LincSNP
Association of human lncRNAs with disease-related SNPs
|
12 |
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miRNASNP-v3
A comprehensive database for SNPs and disease-related variations in miRNAs and miRNA targets.
Welcome to the miRNASNP -v3 database.
microRNAs (miRNAs) are endogenous and regulatory non-coding RNAs by targeting mRNAs for cleavage or translational re
...
|
13 |
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rVarbase
Annotated SNPs within regulatory DNA elements
|
14 |
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dbSAP
Single Amino acid polymorphisms: SNP-derived variation in human proteins
|
15 |
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SNP500Cancer
Re-sequenced SNPs from 102 reference samples
|
16 |
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PolyDoms
An integrated database of human coding single nucleotide polymorphisms (SNPs) and their annotations.
|
17 |
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dbSNP-Q
GWAS prioritization tool
|
18 |
|
Mouse Phenome Database
Characterizations of hundreds of strains of laboratory mice to facilitate translational discoveries and to assist in selection of strains for experimental studies. Data sets are voluntarily contributed by researchers or retrieved by us from public so
...
|
19 |
|
Database of Single Nucleotide Polymorphism
dbSNP contains human single nucleotide variations, microsatellites, and small-scale insertions and deletions along with publication, population frequency, molecular consequence, and genomic and RefSeq mapping information for both common variations an
...
|
20 |
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SNPeffect
SNPeffect is a database for phenotyping human single nucleotide polymorphisms (SNPs). SNPeffect primarily focuses on the molecular characterization and annotation of disease and polymorphism variants in the human proteome. Further, SNPeffect holds pe
...
|
21 |
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DistiLD Database: Diseases and Traits in Linkage Disequilibrium Blocks
The DistiLD database aims to increase the usage of existing genome-wide association studies (GWAS) results by making it easy to query and visualize disease-associated SNPs and genes in their chromosomal context.
|
22 |
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ORFDB
A major challenge following the sequencing of the human genome is to determine the biological functions of the estimated 30,000 genes. This requires the biochemical characterization of expressed proteins in various hosts. To facilitate the protein ex
...
|
23 |
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IPD-HPA - Human Platelet Antigens
The Immuno Polymorphism Database (IPD) is a set of specialist databases related to the study of polymorphic genes in the immune system. IPD currently consists of four databases: IPD-KIR, contains the allelic sequences of Killer-cell Immunoglobulin-li
...
|
24 |
|
GeneSNPs
Gene-centric map of the genome structure, coding sequences, and identified allelic variation in genes being targeted for a role in disease susceptibility by the NIEHS (National Institute of Evironmental Health Sciences). This database provides a grap
...
|
25 |
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Allosteric Mutation Analysis and Polymorphism of Signaling database
The AlloMAPS database provides data on the energetics of communication in proteins with well-documented allosteric regulation, allosteric signalling in PDBselect chains, and allosteric effects of mutations. In addition to energetics of allosteric sig
...
|
26 |
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openSNP
A crowdsourced collection of personal genomics data. Includes SNP genotyping, exome sequencing data, phenotypic annotation and quantified self tracking data.
|
27 |
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HLungDB
Database of Human Lung Cancer Research
|
28 |
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HmtVar
A data and text mining pipeline to annotate human mitochondrial variants with functional and clinical information.
The main web resource to explore human mitochondrial variability data and their pathological correlation.
HmtVar is a manually-curate
...
|
29 |
|
H-Invitational Database
H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. By extensive analyses of all human transcripts, we provide curated annotations of human genes and transcripts that include gene structures, alternative splici
...
|
30 |
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CADgene
Coronary Artery Disease gene database
|
31 |
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TIARA - Total Integrated Archive of short-Read and Array
The Total Integrated Archive of short-Read and Array (TIARA) accumulates raw-level personal genomic data from whole genome next-generation sequencing (NGS) and comparative genomic hybridization (CGH) arrays. Initially, it contains 36 individual genom
...
|
32 |
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PLANdbAffy
Probe-Level Annotation Database for Affymetrix microarrays
|
33 |
|
INTREPID bioinformatics
!!! >>> intrepidbio.com expired <<< !!!! Intrepid Bioinformatics serves as a community for genetic researchers and scientific programmers who need to achieve meaningful use of their genetic research data – but can’t spend tremendous amounts of time
...
|
34 |
|
GWASdb
GWASdb comprises of collections of traits/diseases associated SNP (TASs) from current GWAS and their comprehensive functional annotations, as well as disease classifications.
|
35 |
|
Genome Variation Map
The Genome Variation Map (GVM) is a public data repository of genome variations, including single nucleotide polymorphisms (SNP) and small insertions and deletions (INDEL), with particular focuses on human as well as cultivated plants and domesticate
...
|
36 |
|
MutDB
The goal of MutDB is to annotate human variation data with protein structural information and other functionally relevant information, if available. The mutations are organized by gene. Click on the alphabet below to go alphabetically through the lis
...
|
37 |
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YanHuang - YH1 Genome Database
The YH database presents the entire DNA sequence of a Han Chinese individual, as a representative of Asian population. This genome, named as YH, is the start of YanHuang Project, which aims to sequence 100 Chinese individuals in 3 years.assembled bas
...
|
38 |
|
SNPedia
SNPedia is a wiki resource of the functional consequences of human genetic variation as published in peer-reviewed studies. Entries are formatted to allow associations to be assigned to single genotypes as well as sets of genotypes (genosets). Curati
...
|
39 |
|
The International Genome Sample Resource
The International Genome Sample Resource (IGSR) was established to ensure the ongoing usability of data generated by the 1000 Genomes Project and to extend the data set. The 1000 Genomes Project ran between 2008 and 2015, creating the largest public
...
|
40 |
|
TogoVar
TogoVar (NBDC's integrated database of Japanese genomic variation) is a database that has collected and organized genome sequence differences between individuals (variants) in the Japanese population and disease information associated with them. Togo
...
|
41 |
|
GIMICA
The Host Genetic and Immune Factors Shaping Human Microbiota (GIMICA) is a database systematically providing host genetic factors (HGFs) and host immune factors (HIFs). Both factors are essential for defining the chemical and physical landscapes inha
...
|
42 |
|
Pig Genomic Informatics System
The Pig Genomic Informatics System (PigGIS) presents accurate pig gene annotations in all sequenced genomic regions. It integrates various available pig sequence data, including 3.84 million whole-genome-shortgun (WGS) reads and 0.7 million Expressed
...
|
43 |
|
GPCR NaVa database
The GPCR NaVa database describes sequence variants within the family of human G Protein-Coupled Receptors (GPCRs). GPCRs regulate many physiological functions and are the targets for most of today's medicines. The acronym NaVa stands for Natural Vari
...
|
44 |
|
UCbase and miRfunc
Ultraconserved sequences (UCRs) were first described by Bejerano et al. in 2004. They are highly conserved genome regions that share 100% identity among human, mouse and rat. UCRs are 481 sequences longer than 200 bases. They are frequently located a
...
|
45 |
|
Database of Kashiwa Encyclopedia for human genome mutations in Regulatory regions and their Omics contexts
The Database of Kashiwa Encyclopedia for human genome mutations in Regulatory regions and their Omics contexts (DBKERO) stores transcriptome information with a catalogue of genomic variations including public SNP data and epigenome information to ena
...
|
46 |
|
Eukaryotic Promoter Database
The Eukaryotic Promoter Database (EPD) provides accurate transcription start site (TSS) information for promoters of 15 model organisms, from human to yeast to the malaria parasite Plasmodium falciparum. While the original database was a manually cur
...
|
47 |
|
TassDB
TassDB (TAndem Splice Site DataBase) stores extensive data about alternative splice events at GYNGYN donors and NAGNAG acceptors. These splice events are of subtle nature since they mostly result in the insertion/deletion of a single amino acid or th
...
|
48 |
|
GeneCards: human genes, protein and diseases
GeneCards is a searchable, integrated, database of human genes that provides concise genomic, transcriptomic, genetic, proteomic, functional and disease related information on all known and predicted human genes.
|
49 |
|
International HapMap Project
<<<!!!<<< OFFLINE >>>!!!>>>
A recent computer security audit has revealed security flaws in the legacy HapMap site that require NCBI to take it down immediately. We regret the inconvenience, but we are required to do this. That said, NCBI was plannin
...
|
50 |
|
Database of Genotypes and Phenotypes
The Database of Genotypes and Phenotypes (dbGaP) archives and distributes the results of studies that have investigated the interaction of genotype and phenotype. Such studies include genome-wide association studies, medical sequencing, molecular dia
...
|
51 |
|
Super-Enhancer Archive
SEA (Super-Enhancer Archive) is a web-based comprehensive resource focusing on the collection, storage and online analysis of super-enhancers. It focuses on integrating super-enhancers in multiple species and annotating their potential roles in the r
...
|
52 |
|
iUUCD
The ubiquitin and ubiquitin-like (Ub/Ubl) conjugation is one of the most important post-
translational modifications (PTMs) in proteins, and regulates a large number of cellular processes,
such as cell cycle, signal transduction, apoptosis and auto
...
|
53 |
|
Animal Quantitative Trait Loci (QTL) Database
The Animal Quantitative Trait Loci (QTL) Database (Animal QTLdb) strives to collect all publicly available trait mapping data, i.e. QTL (phenotype/expression, eQTL), candidate gene and association data (GWAS), and copy number variations (CNV) mapped
...
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54 |
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*ReputationScore indicates how established a given datasource is. Find out more.