TassDB

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TassDB

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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Tandem splice site database (TassDB)

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:34.850590

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tassdb

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:34.850590

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Other names: Tandem splice site database (TassDB), tassdb

TassDB (TAndem Splice Site DataBase) stores extensive data about alternative splice events at GYNGYN donors and NAGNAG acceptors. These splice events are of subtle nature since they mostly result in the insertion/deletion of a single amino acid or the substitution of one amino acid by two others. Currently, TassDB contains 114,554 tandem splice sites of eight species, 5,209 of which have EST/mRNA evidence for alternative splicing. In addition, human SNPs that affect NAGNAG acceptors are annotated. The database provides a user-friendly interface to search for specific genes or for genes containing tandem splice sites with specific features as well as the possibility to download large datasets. The aim of this database is to facilitate experimental studies and large-scale bioinformatics analyses of tandem splice sites.

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Publications

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TassDB: a database of alternative tandem splice sites
PMID: 17142241

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:34.850590

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• TassDB: a database of alternative tandem splice sites PubMed citations: 14.

  14 articles citing: TassDB: a database of alternative tandem splice sites

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  Alternative Splicing May Not Be the Key to Proteome Complexity. PMID:27712956

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  PTGBase: an integrated database to study tandem duplicated genes in plants. PMID:25797062

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  A subtle alternative splicing event gives rise to a widely expressed human RNase k isoform. PMID:24797913

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  Function of alternative splicing. PMID:22909801

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  Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function. PMID:22446687

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  Complexity of bidirectional transcription and alternative splicing at human RCAN3 locus. PMID:21961037

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  Increased complexity of Tmem16a/Anoctamin 1 transcript alternative splicing. PMID:21824394

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  Constant splice-isoform ratios in human lymphoblastoid cells support the concept of a splico-stat. PMID:21220357

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  The Drosophila melanogaster transcriptome by paired-end RNA sequencing. PMID:21177959

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  Some novel intron positions in conserved Drosophila genes are caused by intron sliding or tandem duplication. PMID:20500887

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  TassDB2 - A comprehensive database of subtle alternative splicing events. PMID:20429909

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  Accurate prediction of NAGNAG alternative splicing. PMID:19359358

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  Selection against tandem splice sites affecting structured protein regions. PMID:18366714

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  Assessing the fraction of short-distance tandem splice sites under purifying selection. PMID:18268022

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nucleotide sequence databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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coding and non-coding dna

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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nucleic acid sites, features and motifs

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:34.850590

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gene structure

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:34.850590

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nucleic acid sequence coding and non-coding dna nucleic acid sites, features and motifs gene structure