Drosophila polymorphism database
Names
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Drosophila polymorphism database
metasource: Fairsharing.org
version: FAIRsharing.org: DPD; Drosophila polymorphism database; DOI: https://doi.org/10.25504/FAIRsharing.ff7n4h; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
DPD
metasource: Fairsharing.org
version: FAIRsharing.org: DPD; Drosophila polymorphism database; DOI: https://doi.org/10.25504/FAIRsharing.ff7n4h; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Names
More detailed information about this field from each metasource.
Drosophila polymorphism database
metasource: Fairsharing.orgversion: FAIRsharing.org: DPD; Drosophila polymorphism database; DOI: https://doi.org/10.25504/FAIRsharing.ff7n4h; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
DPD
metasource: Fairsharing.orgversion: FAIRsharing.org: DPD; Drosophila polymorphism database; DOI: https://doi.org/10.25504/FAIRsharing.ff7n4h; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Names
More detailed information about this field from each metasource.
Drosophila polymorphism database
metasource: Fairsharing.orgversion: FAIRsharing.org: DPD; Drosophila polymorphism database; DOI: https://doi.org/10.25504/FAIRsharing.ff7n4h; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
DPD
metasource: Fairsharing.orgversion: FAIRsharing.org: DPD; Drosophila polymorphism database; DOI: https://doi.org/10.25504/FAIRsharing.ff7n4h; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Drosophila Polymorphism Database, is a secondary database designed to provide a collection of all the existing polymorphic sequences in the Drosophila genus. It allows, for the first time, the search for any polymorphic set according to different parameter values of nucleotide diversity.
Description
More detailed information about this field from each metasource.
Drosophila Polymorphism Database, is a secondary database designed to provide a collection of all the existing polymorphic sequences in the Drosophila genus. It allows, for the first time, the search for any polymorphic set according to different parameter values of nucleotide diversity.
metasource: Fairsharing.orgversion: FAIRsharing.org: DPD; Drosophila polymorphism database; DOI: https://doi.org/10.25504/FAIRsharing.ff7n4h; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
The Drosophila Polymorphism Database (1) is a secondary database designed to provide a collection of all the existing polymorphic sequences in the Drosophila genus grouped by name of organism and gene. It allows, for the first time, the search for any polymorphic set according to different parameter values of nucleotide diversity. For data collection, diversity measures and updating we use PDA (2,3), a pipeline made of a set of Perl modules that automates the process of sequence retrieving, grouping, aligning and estimating diversity parameters from Genbank sequences.Diversity measures, including polymorphism estimates at synonymous and nonsynonymous sites, linkage disequilibrium and codon bias, are calculated for each polymorphic set in different functional regions. The database also includes the primary information retrieved from different external sources: the Drosophila publicly available nucleotide sequences (excluding ESTs, STSs, GSSs, working draft and patents) with their annotations and references from Genbank, additional information of genes and aberrations from Flybase, and the cross-references to the Popset database. The database content is daily updated, and records are assigned unique and permanent DPDB identification numbers to facilitate cross-database referencing.Online query interfaces facilitate data interrogation by different polymorphism parameter values and keyword queries (based on SQL searches) and sequence similarity (with Blast). Full reports, sequences and alignments in different formats and polymorphism parameters can be obtained in both textual and graphical formats. The web site also includes software facilities for data analysis and a daily-updated web page with exhaustive statistics on the contents of the database. The database is available at can be freely downloaded via FTP.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://dpdb.uab.es/dpdb/dpdb.aspWebpage
More detailed information about this field from each metasource.
http://dpdb.uab.es/dpdb/dpdb.asp
metasource: Fairsharing.orgversion: FAIRsharing.org: DPD; Drosophila polymorphism database; DOI: https://doi.org/10.25504/FAIRsharing.ff7n4h; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dpdb.uab.es/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
More detailed information about this field from each metasource.
DPDB: a database for the storage, representation and analysis of polymorphism in the Drosophila genus
PMID: 16204116
metasource: Fairsharing.org
version: FAIRsharing.org: DPD; Drosophila polymorphism database; DOI: https://doi.org/10.25504/FAIRsharing.ff7n4h; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Drosophila polymorphism database (DPDB): a portal for nucleotide polymorphism in Drosophila
PMID: 18820438
metasource: Fairsharing.org
version: FAIRsharing.org: DPD; Drosophila polymorphism database; DOI: https://doi.org/10.25504/FAIRsharing.ff7n4h; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications
More detailed information about this field from each metasource.
DPDB: a database for the storage, representation and analysis of polymorphism in the Drosophila genus
PMID: 16204116
metasource: Fairsharing.org
version: FAIRsharing.org: DPD; Drosophila polymorphism database; DOI: https://doi.org/10.25504/FAIRsharing.ff7n4h; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Drosophila polymorphism database (DPDB): a portal for nucleotide polymorphism in Drosophila
PMID: 18820438
metasource: Fairsharing.org
version: FAIRsharing.org: DPD; Drosophila polymorphism database; DOI: https://doi.org/10.25504/FAIRsharing.ff7n4h; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
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DPDB: a database for the storage, representation and analysis of polymorphism in the Drosophila genus
PubMed citations: 9.
9 articles citing: DPDB: a database for the storage, representation and analysis of polymorphism in the Drosophila genus
Molecular Population Genetics. PMID:28270526
FlyVar: a database for genetic variation in Drosophila melanogaster. PMID:26289428
Dopamine drives Drosophila sechellia adaptation to its toxic host. PMID:25487989
Segmental duplication, microinversion, and gene loss associated with a complex inversion breakpoint region in Drosophila. PMID:22328714
Evolution of the actin gene family in testate lobose amoebae (Arcellinida) is characterized by two distinct clades of paralogs and recent independent expansions. PMID:20679092
Standard and generalized McDonald-Kreitman test: a website to detect selection by comparing different classes of DNA sites. PMID:18515345
Protein polymorphism is negatively correlated with conservation of intronic sequences and complexity of expression patterns in Drosophila melanogaster. PMID:17460807
MamPol: a database of nucleotide polymorphism in the Mammalia class. PMID:17142236
PDA v.2: improving the exploration and estimation of nucleotide polymorphism in large datasets of heterogeneous DNA. PMID:16845088 -
Drosophila polymorphism database (DPDB): a portal for nucleotide polymorphism in Drosophila
PubMed citations: 2.
2 articles citing: Drosophila polymorphism database (DPDB): a portal for nucleotide polymorphism in Drosophila
Gene alterations at Drosophila inversion breakpoints provide prima facie evidence for natural selection as an explanation for rapid chromosomal evolution. PMID:22296923
Standard and generalized McDonald-Kreitman test: a website to detect selection by comparing different classes of DNA sites. PMID:18515345
Tags:
Tags
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deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: DPD; Drosophila polymorphism database; DOI: https://doi.org/10.25504/FAIRsharing.ff7n4h; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genetic polymorphism
metasource: Fairsharing.org
version: FAIRsharing.org: DPD; Drosophila polymorphism database; DOI: https://doi.org/10.25504/FAIRsharing.ff7n4h; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: DPD; Drosophila polymorphism database; DOI: https://doi.org/10.25504/FAIRsharing.ff7n4h; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
single nucleotide polymorphism
metasource: Fairsharing.org
version: FAIRsharing.org: DPD; Drosophila polymorphism database; DOI: https://doi.org/10.25504/FAIRsharing.ff7n4h; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
invertebrate genome databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: DPD; Drosophila polymorphism database; DOI: https://doi.org/10.25504/FAIRsharing.ff7n4h; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genetic polymorphism
metasource: Fairsharing.orgversion: FAIRsharing.org: DPD; Drosophila polymorphism database; DOI: https://doi.org/10.25504/FAIRsharing.ff7n4h; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: DPD; Drosophila polymorphism database; DOI: https://doi.org/10.25504/FAIRsharing.ff7n4h; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
single nucleotide polymorphism
metasource: Fairsharing.orgversion: FAIRsharing.org: DPD; Drosophila polymorphism database; DOI: https://doi.org/10.25504/FAIRsharing.ff7n4h; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
invertebrate genome databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
dna polymorphism genome single nucleotide polymorphism genomics invertebrate genome
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