BeetleBase

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BeetleBase

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: re3data.org
version: re3data.org: BeetleBase; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G61K last accessed: 2022-11-04

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:13.222440

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beetlebase

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:13.222440

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Other names: beetlebase

Genome database of the beetle Tribolium castaneum

Webpage:

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Publications:

Publications

More detailed information about this field from each metasource. ×

BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum
PMID: 19820115

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:13.222440

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• BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum PubMed citations: 86.

  86 articles citing: BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum

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  Detection of sex in adults and larvae of Leptinotarsa decemlineata on principle of copy number variation. PMID:35301399

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  InsectBase 2.0: a comprehensive gene resource for insects. PMID:34792158

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  Mutually Exclusive Expression of Closely Related Odorant-Binding Proteins 9A and 9B in the Antenna of the Red Flour Beetle Tribolium castaneum. PMID:34680135

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  Rapid Genomic Evolution Drives the Diversification of Male Reproductive Genes in Dung Beetles. PMID:34426833

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  Tribolium beetles as a model system in evolution and ecology. PMID:33767370

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  A coffee berry borer (Hypothenemus hampei) genome assembly reveals a reduced chemosensory receptor gene repertoire and male-specific genome sequences. PMID:33649370

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  Function Analysis of P450 and GST Genes to Imidacloprid in Aphis craccivora (Koch). PMID:33551847

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  Chromosome-level reference genome of the European wasp spider Argiope bruennichi: a resource for studies on range expansion and evolutionary adaptation. PMID:33410470

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  Multi-faceted analysis provides little evidence for recurrent whole-genome duplications during hexapod evolution. PMID:32460826

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  A new neuropeptide insect parathyroid hormone iPTH in the red flour beetle Tribolium castaneum. PMID:32365064

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  Adult neurogenesis in the mushroom bodies of red flour beetles (Tribolium castaneum, HERBST) is influenced by the olfactory environment. PMID:31974446

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  Enhanced genome assembly and a new official gene set for Tribolium castaneum. PMID:31937263

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  BmBlimp-1 gene encoding a C2H2 zinc finger protein is required for wing development in the silkworm Bombyx mori. PMID:31754338

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  Identification of candidate chemosensory genes of Ophraella communa LeSage (Coleoptera: Chrysomelidae) based on antennal transcriptome analysis. PMID:31664149

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  Patterns and Constraints in the Evolution of Sperm Individualization Genes in Insects, with an Emphasis on Beetles. PMID:31590243

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  Development of a new method for collecting hemolymph and measuring phenoloxidase activity in Tribolium castaneum. PMID:30616595

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  Genome of the small hive beetle (Aethina tumida, Coleoptera: Nitidulidae), a worldwide parasite of social bee colonies, provides insights into detoxification and herbivory. PMID:30535280

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  Silencing of Rieske Iron-Sulfur Protein Impacts Upon the Development and Reproduction of Spodoptera exigua by Regulating ATP Synthesis. PMID:29881355

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  A universal vector concept for a direct genotyping of transgenic organisms and a systematic creation of homozygous lines. PMID:29543587

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  The exon junction complex factor Y14 is dynamic in the nucleus of the beetle Tribolium castaneum during late oogenesis. PMID:29151891

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  A mannitol/sorbitol receptor stimulates dietary intake in Tribolium castaneum. PMID:29023543

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  Abundant expression of somatic transposon-derived piRNAs throughout Tribolium castaneum embryogenesis. PMID:28950880

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  Progress and Prospects of CRISPR/Cas Systems in Insects and Other Arthropods. PMID:28932198

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  CRISPR/Cas9 gene drives in genetically variable and nonrandomly mating wild populations. PMID:28560324

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  Light Sheet-based Fluorescence Microscopy of Living or Fixed and Stained Tribolium castaneum Embryos. PMID:28518097

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  Transcriptome sequencing and phylogenetic analysis of four species of luminescent beetles. PMID:28500331

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  Genome-wide DNA methylomes from discrete developmental stages reveal the predominance of non-CpG methylation in Tribolium castaneum. PMID:28449092

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  Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae. PMID:28446171

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  Characterization and expression profiling of serine protease inhibitors in the diamondback moth, Plutella xylostella (Lepidoptera: Plutellidae). PMID:28196471

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  Transcriptome and Gene Expression Analysis of Cylas formicarius (Coleoptera: Brentidae) During Different Development Stages. PMID:28076281

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  OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs. PMID:27899580

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  Morphological and Transcriptomic Analysis of a Beetle Chemosensory System Reveals a Gnathal Olfactory Center. PMID:27751175

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  Regular Higher Order Repeat Structures in Beetle Tribolium castaneum Genome. PMID:27492235

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  Superoxide dismutase 2 knockdown leads to defects in locomotor activity, sensitivity to paraquat, and increased cuticle pigmentation in Tribolium castaneum. PMID:27387523

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  ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods. PMID:27242037

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  A cure for the blues: opsin duplication and subfunctionalization for short-wavelength sensitivity in jewel beetles (Coleoptera: Buprestidae). PMID:27193495

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  Epithelial sodium channel (ENaC) family: Phylogeny, structure-function, tissue distribution, and associated inherited diseases. PMID:26772908

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  Carbon dioxide receptor genes and their expression profile in Diabrotica virgifera virgifera. PMID:26746870

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  Molecular mapping and characterization of the silkworm apodal mutant. PMID:26738847

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  InsectBase: a resource for insect genomes and transcriptomes. PMID:26578584

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  The evolutionary landscape of intergenic trans-splicing events in insects. PMID:26521696

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  MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum. PMID:26518483

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  The Genome and Methylome of a Beetle with Complex Social Behavior, Nicrophorus vespilloides (Coleoptera: Silphidae). PMID:26454014

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  Alternatively spliced orcokinin isoforms and their functions in Tribolium castaneum. PMID:26235678

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  Expression study of the hunchback ortholog in embryos of the onychophoran Euperipatoides rowelli. PMID:26093940

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  Sexual selection protects against extinction. PMID:25985178

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  Characterization and expression profiling of glutathione S-transferases in the diamondback moth, Plutella xylostella (L.). PMID:25887517

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  Web resources for model organism studies. PMID:25707592

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  RNAi screening of developmental toolkit genes: a search for novel wing genes in the red flour beetle, Tribolium castaneum. PMID:25613748

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  Hessian fly larval feeding triggers enhanced polyamine levels in susceptible but not resistant wheat. PMID:25592131

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  Tissue-specific transcriptomics, chromosomal localization, and phylogeny of chemosensory and odorant binding proteins from the red flour beetle Tribolium castaneum reveal subgroup specificities for olfaction or more general functions. PMID:25523483

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  OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software. PMID:25428351

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  iPathCons and iPathDB: an improved insect pathway construction tool and the database. PMID:25388589

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  iBeetle-Base: a database for RNAi phenotypes in the red flour beetle Tribolium castaneum. PMID:25378303

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  The Tribolium castaneum cell line TcA: a new tool kit for cell biology. PMID:25354547

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  Phylogenetic analyses and characterization of RNase X25 from Drosophila melanogaster suggest a conserved housekeeping role and additional functions for RNase T2 enzymes in protostomes. PMID:25133712

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  CutProtFam-Pred: detection and classification of putative structural cuticular proteins from sequence alone, based on profile hidden Markov models. PMID:24978609

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  Infection routes matter in population-specific responses of the red flour beetle to the entomopathogen Bacillus thuringiensis. PMID:24908078

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  Patterns of positive selection in seven ant genomes. PMID:24782441

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  Odoriferous Defensive stink gland transcriptome to identify novel genes necessary for quinone synthesis in the red flour beetle, Tribolium castaneum. PMID:23874211

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  KONAGAbase: a genomic and transcriptomic database for the diamondback moth, Plutella xylostella. PMID:23837716

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  Glycogen and glucose metabolism are essential for early embryonic development of the red flour beetle Tribolium castaneum. PMID:23750237

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  Pharmacological characterization of a 5-HT1-type serotonin receptor in the red flour beetle, Tribolium castaneum. PMID:23741451

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  Computational identification of functional introns: high positional conservation of introns that harbor RNA genes. PMID:23605046

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  Integrated analysis of cytochrome P450 gene superfamily in the red flour beetle, Tribolium castaneum. PMID:23497158

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  Genomic insights into the glutathione S-transferase gene family of two rice planthoppers, Nilaparvata lugens (Stål) and Sogatella furcifera (Horváth) (Hemiptera: Delphacidae). PMID:23457591

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  Proteome response of Tribolium castaneum larvae to Bacillus thuringiensis toxin producing strains. PMID:23372850

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  Mechanisms and dynamics of orphan gene emergence in insect genomes. PMID:23348040

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  Functional analysis of the ATP-binding cassette (ABC) transporter gene family of Tribolium castaneum. PMID:23324493

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  Identification of maternally-loaded RNA transcripts in unfertilized eggs of Tribolium castaneum. PMID:23181844

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  OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs. PMID:23180791

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  MonarchBase: the monarch butterfly genome database. PMID:23143105

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  De novo transcriptome assembly and SNP discovery in the wing polymorphic salt marsh beetle Pogonus chalceus (Coleoptera, Carabidae). PMID:22870338

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  Gene expression levels are correlated with synonymous codon usage, amino acid composition, and gene architecture in the red flour beetle, Tribolium castaneum. PMID:22826459

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  A cell line derived from the red flour beetle Tribolium castaneum (Coleoptera: Tenebrionidae). PMID:22752637

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  The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data. PMID:22120662

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  A remarkably stable TipE gene cluster: evolution of insect Para sodium channel auxiliary subunits. PMID:22098672

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  Genomic sequence around butterfly wing development genes: annotation and comparative analysis. PMID:21909358

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  A context-dependent combination of Wnt receptors controls axis elongation and leg development in a short germ insect. PMID:21652652

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  The phylogenetic origin of oskar coincided with the origin of maternally provisioned germ plasm and pole cells at the base of the Holometabola. PMID:21552321

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  CycADS: an annotation database system to ease the development and update of BioCyc databases. PMID:21474551

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  Diversity in protein glycosylation among insect species. PMID:21373189

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  The Aquaporin gene family of the yellow fever mosquito, Aedes aegypti. PMID:21249121

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  Gene discovery in the horned beetle Onthophagus taurus. PMID:21156066

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  OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011. PMID:20972218

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  The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources. PMID:19965766

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Tags

More detailed information about this field from each metasource. ×

genomics databases (non-vertebrate)

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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invertebrate genome databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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beetles

metasource: re3data.org
version: re3data.org: BeetleBase; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G61K last accessed: 2022-11-04

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developmental biology

metasource: re3data.org
version: re3data.org: BeetleBase; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G61K last accessed: 2022-11-04

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entomology

metasource: re3data.org
version: re3data.org: BeetleBase; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G61K last accessed: 2022-11-04

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genetics

metasource: re3data.org
version: re3data.org: BeetleBase; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G61K last accessed: 2022-11-04

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:13.222440

---

genomics

metasource: re3data.org
version: re3data.org: BeetleBase; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G61K last accessed: 2022-11-04

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insects

metasource: re3data.org
version: re3data.org: BeetleBase; editing status 2019-01-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G61K last accessed: 2022-11-04

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mapping

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:13.222440

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model organisms

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:13.222440

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gene transcripts

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:13.222440

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sequence assembly

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:13.222440

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genomics invertebrate genome beetles developmental biology entomology genetics genomics insects mapping model organisms gene transcripts sequence assembly