StellaBase
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StellaBase is the Nematostella vectensis genomics database.
Description
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StellaBase is the Nematostella vectensis genomics database.
metasource: Fairsharing.orgversion: FAIRsharing.org: StellaBase; StellaBase; DOI: https://doi.org/10.25504/FAIRsharing.72qwj0; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Nematostella vectensis genomics database
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://stellabase.orgWebpage
More detailed information about this field from each metasource.
http://stellabase.org
metasource: Fairsharing.orgversion: FAIRsharing.org: StellaBase; StellaBase; DOI: https://doi.org/10.25504/FAIRsharing.72qwj0; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://stellabase.org/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Licence:
Name: NIH Web Policies and NoticesLicence name
More detailed information about this field from each metasource.
NIH Web Policies and Notices
metasource: Fairsharing.orgversion: FAIRsharing.org: StellaBase; StellaBase; DOI: https://doi.org/10.25504/FAIRsharing.72qwj0; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Licence URL
More detailed information about this field from each metasource.
https://www.nih.gov/web-policies-notices
metasource: Fairsharing.orgversion: FAIRsharing.org: StellaBase; StellaBase; DOI: https://doi.org/10.25504/FAIRsharing.72qwj0; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
StellaBase: the Nematostella vectensis Genomics Database
PMID: 16381919
metasource: Fairsharing.org
version: FAIRsharing.org: StellaBase; StellaBase; DOI: https://doi.org/10.25504/FAIRsharing.72qwj0; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Publications
More detailed information about this field from each metasource.
StellaBase: the Nematostella vectensis Genomics Database
PMID: 16381919
metasource: Fairsharing.org
version: FAIRsharing.org: StellaBase; StellaBase; DOI: https://doi.org/10.25504/FAIRsharing.72qwj0; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
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StellaBase: the Nematostella vectensis Genomics Database
PubMed citations: 53.
53 articles citing: StellaBase: the Nematostella vectensis Genomics Database
Functional Characterization of Hexacorallia Phagocytic Cells. PMID:34381444
IAPs Gene Expansion in the Scallop Patinopecten yessoensis and Their Expression Profiles After Exposure to the Toxic Dinoflagellate. PMID:33613325
Dynamic Evolution of the Cthrc1 Genes, a Newly Defined Collagen-Like Family. PMID:32022859
The past, present, and future of coral heat stress studies. PMID:31534713
An adaptable chromosome preparation methodology for use in invertebrate research organisms. PMID:29482548
Intraspecific variation in oxidative stress tolerance in a model cnidarian: Differences in peroxide sensitivity between and within populations of Nematostella vectensis. PMID:29373572
Sea anemone model has a single Toll-like receptor that can function in pathogen detection, NF-κB signal transduction, and development. PMID:29109290
Histological study on maturation, fertilization and the state of gonadal region following spawning in the model sea anemone, Nematostella vectensis. PMID:28796817
Conservation and divergence of mitochondrial apoptosis pathway in the Pacific oyster, Crassostrea gigas. PMID:28682310
Non-model model organisms. PMID:28662661
New Disulfide-Stabilized Fold Provides Sea Anemone Peptide to Exhibit Both Antimicrobial and TRPA1 Potentiating Properties. PMID:28468269
Tentacle Transcriptome and Venom Proteome of the Pacific Sea Nettle, Chrysaora fuscescens (Cnidaria: Scyphozoa). PMID:27058558
Gene duplications are extensive and contribute significantly to the toxic proteome of nematocysts isolated from Acropora digitifera (Cnidaria: Anthozoa: Scleractinia). PMID:26464356
C2H2 zinc finger proteins of the SP/KLF, Wilms tumor, EGR, Huckebein, and Klumpfuss families in metazoans and beyond. PMID:26187067
A customized Web portal for the genome of the ctenophore Mnemiopsis leidyi. PMID:24773765
Production of a reference transcriptome and transcriptomic database (EdwardsiellaBase) for the lined sea anemone, Edwardsiella lineata, a parasitic cnidarian. PMID:24467778
Transcriptome deep-sequencing and clustering of expressed isoforms from Favia corals. PMID:23937070
Characterizing the spatiotemporal expression of RNAs and proteins in the starlet sea anemone, Nematostella vectensis. PMID:23579779
Proteomic analysis of skeletal organic matrix from the stony coral Stylophora pistillata. PMID:23431140
A report from the second Nematostella vectensis research conference. PMID:23314922
A single-cell view of ammonium assimilation in coral-dinoflagellate symbiosis. PMID:22222466
Production of a reference transcriptome and transcriptomic database (PocilloporaBase) for the cauliflower coral, Pocillopora damicornis. PMID:22126435
A comparative gene expression database for invertebrates. PMID:21861937
Crystal structure of menin reveals binding site for mixed lineage leukemia (MLL) protein. PMID:21757704
Evidence for involvement of TRPA1 in the detection of vibrations by hair bundle mechanoreceptors in sea anemones. PMID:21394510
Regulation of apoptotic mediators reveals dynamic responses to thermal stress in the reef building coral Acropora millepora. PMID:21283671
Strabismus-mediated primary archenteron invagination is uncoupled from Wnt/β-catenin-dependent endoderm cell fate specification in Nematostella vectensis (Anthozoa, Cnidaria): Implications for the evolution of gastrulation. PMID:21255391
Characterization of the core elements of the NF-κB signaling pathway of the sea anemone Nematostella vectensis. PMID:21189285
A conserved cluster of three PRD-class homeobox genes (homeobrain, rx and orthopedia) in the Cnidaria and Protostomia. PMID:20849646
Expansion of tandem repeats in sea anemone Nematostella vectensis proteome: A source for gene novelty? PMID:20003297
Fusion and retrotransposition events in the evolution of the sea anemone Anemonia viridis neurotoxin genes. PMID:19609479
Sea anemone toxins affecting voltage-gated sodium channels--molecular and evolutionary features. PMID:19268682
The evolutionary origin of the Runx/CBFbeta transcription factors--studies of the most basal metazoans. PMID:18681949
Molecular evolution of Cide family proteins: novel domain formation in early vertebrates and the subsequent divergence. PMID:18500987
Living with death: the evolution of the mitochondrial pathway of apoptosis in animals. PMID:18451868
Evolution of hedgehog and hedgehog-related genes, their origin from Hog proteins in ancestral eukaryotes and discovery of a novel Hint motif. PMID:18334026
The nuclear OXPHOS genes in insecta: a common evolutionary origin, a common cis-regulatory motif, a common destiny for gene duplicates. PMID:18315839
Enzymes of the shikimic acid pathway encoded in the genome of a basal metazoan, Nematostella vectensis, have microbial origins. PMID:18268342
Upgrades to StellaBase facilitate medical and genetic studies on the starlet sea anemone, Nematostella vectensis. PMID:17982171
The p53 tumor suppressor-like protein nvp63 mediates selective germ cell death in the sea anemone Nematostella vectensis. PMID:17848985
Comprehensive analysis of animal TALE homeobox genes: new conserved motifs and cases of accelerated evolution. PMID:17665086
A post-synaptic scaffold at the origin of the animal kingdom. PMID:17551586
Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics. PMID:17335570
Conserved and novel Wnt clusters in the basal eumetazoan Nematostella vectensis. PMID:17310352
Pre-bilaterian origins of the Hox cluster and the Hox code: evidence from the sea anemone, Nematostella vectensis. PMID:17252055
FGF signaling in gastrulation and neural development in Nematostella vectensis, an anthozoan cnidarian. PMID:17237944
Hormonal signaling in cnidarians: do we understand the pathways well enough to know whether they are being disrupted? PMID:17235668
Rel homology domain-containing transcription factors in the cnidarian Nematostella vectensis. PMID:17120026
The genome of the sea urchin Strongylocentrotus purpuratus. PMID:17095691
A genome-wide survey of the evolutionarily conserved Wnt pathways in the sea urchin Strongylocentrotus purpuratus. PMID:17069790
Phylogenetic analysis of the tenascin gene family: evidence of origin early in the chordate lineage. PMID:16893461
The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: evidence from the starlet sea anemone, Nematostella vectensis. PMID:16867185
Comparative genomics of the syndecans defines an ancestral genomic context associated with matrilins in vertebrates. PMID:16620374
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Tags
More detailed information about this field from each metasource.
dna sequence data
metasource: Fairsharing.org
version: FAIRsharing.org: StellaBase; StellaBase; DOI: https://doi.org/10.25504/FAIRsharing.72qwj0; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: StellaBase; StellaBase; DOI: https://doi.org/10.25504/FAIRsharing.72qwj0; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: StellaBase; StellaBase; DOI: https://doi.org/10.25504/FAIRsharing.72qwj0; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: StellaBase; StellaBase; DOI: https://doi.org/10.25504/FAIRsharing.72qwj0; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
invertebrate genome databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
dna sequence data
metasource: Fairsharing.orgversion: FAIRsharing.org: StellaBase; StellaBase; DOI: https://doi.org/10.25504/FAIRsharing.72qwj0; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: StellaBase; StellaBase; DOI: https://doi.org/10.25504/FAIRsharing.72qwj0; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: StellaBase; StellaBase; DOI: https://doi.org/10.25504/FAIRsharing.72qwj0; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: StellaBase; StellaBase; DOI: https://doi.org/10.25504/FAIRsharing.72qwj0; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
invertebrate genome databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
dna sequences gene gene expression genome genomics invertebrate genome
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