FlyTF

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FlyTF

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:01.651645

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flytf

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:01.651645

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Other names: flytf

FlyTF (v2) is a manually curated catalogue of Drosophila site-specific transcription factors (TFs). It integrates proteins identified as DNA-binding TFs by computational prediction based on structural domain assignments, and experimentally verified TFs from the literature.

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Publications:

Publications

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FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database
PMID: 19884132

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:01.651645

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http://bioinformatics.oxfordjournals.org/cgi/content/abstract/22/12/1532

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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• FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database PubMed citations: 41.

  41 articles citing: FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database

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  Dense time-course gene expression profiling of the Drosophila melanogaster innate immune response. PMID:33902461

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  Targeted molecular profiling of rare olfactory sensory neurons identifies fate, wiring, and functional determinants. PMID:33666172

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  Single-cell transcriptomes of developing and adult olfactory receptor neurons in Drosophila. PMID:33555999

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  Temporal evolution of single-cell transcriptomes of Drosophila olfactory projection neurons. PMID:33427646

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  Multiple Isolated Transcription Factors Act as Switches and Contribute to Species Uniqueness. PMID:33003522

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  Dynamic neurotransmitter specific transcription factor expression profiles during Drosophila development. PMID:32493733

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  Single-Cell Transcriptomes Reveal Diverse Regulatory Strategies for Olfactory Receptor Expression and Axon Targeting. PMID:32059767

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  An Atlas of Transcription Factors Expressed in Male Pupal Terminalia of Drosophila melanogaster. PMID:31619460

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  ApicoTFdb: the comprehensive web repository of apicomplexan transcription factors and transcription-associated co-factors. PMID:31529106

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  Sensory neuron lineage mapping and manipulation in the Drosophila olfactory system. PMID:30733440

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  Evidence for a hierarchical transcriptional circuit in Drosophila male germline involving testis-specific TAF and two gene-specific transcription factors, Mod and Acj6. PMID:29235675

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  Dry and wet approaches for genome-wide functional annotation of conventional and unconventional transcriptional activators. PMID:27453771

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  Scalloped and Yorkie are required for cell cycle re-entry of quiescent cells after tissue damage. PMID:26160905

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  GLAD: an Online Database of Gene List Annotation for Drosophila. PMID:26157507

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  Cross-organism analysis using InterMine. PMID:26097192

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  Regulation of transcription factors on sexual dimorphism of fig wasps. PMID:26031454

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  REGULATOR: a database of metazoan transcription factors and maternal factors for developmental studies. PMID:25880930

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  Conservation of transcription factor binding specificities across 600 million years of bilateria evolution. PMID:25779349

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  Prediction of DNA binding motifs from 3D models of transcription factors; identifying TLX3 regulated genes. PMID:25428367

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  AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors. PMID:25262351

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  Transcription factor networks in Drosophila melanogaster. PMID:25242320

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  InterMine: extensive web services for modern biology. PMID:24753429

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  Spatial expression of transcription factors in Drosophila embryonic organ development. PMID:24359758

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  The role of Dichaete in transcriptional regulation during Drosophila embryonic development. PMID:24314314

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  OnTheFly: a database of Drosophila melanogaster transcription factors and their binding sites. PMID:24271386

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  Inducible protein traps with dominant phenotypes for functional analysis of the Drosophila genome. PMID:24172131

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  Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PMID:24146751

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  Purification and characterization of transcription factors. PMID:23832591

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  DNA motif elucidation using belief propagation. PMID:23814189

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  Developmental gene discovery in a hemimetabolous insect: de novo assembly and annotation of a transcriptome for the cricket Gryllus bimaculatus. PMID:23671567

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  InterMOD: integrated data and tools for the unification of model organism research. PMID:23652793

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  CBS: an open platform that integrates predictive methods and epigenetics information to characterize conserved regulatory features in multiple Drosophila genomes. PMID:23228284

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  Global analysis of target genes of 21 members of the ZAD transcription factor family in Drosophila melanogaster. PMID:23085320

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  Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions. PMID:23070853

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  InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data. PMID:23023984

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  Cell type-specific genomics of Drosophila neurons. PMID:22855560

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  BMP signaling components in embryonic transcriptomes of the hover fly Episyrphus balteatus (Syrphidae). PMID:21627820

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  Genome-wide analysis of self-renewal in Drosophila neural stem cells by transgenic RNAi. PMID:21549331

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  Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster. PMID:21233220

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  Genomic repertoires of DNA-binding transcription factors across the tree of life. PMID:20675356

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  Mapping the complexity of transcription control in higher eukaryotes. PMID:20441601
• http://bioinformatics.oxfordjournals.org/cgi/content/abstract/22/12/1532

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Tags

More detailed information about this field from each metasource. ×

nucleotide sequence databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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transcriptional regulator sites and transcription factors

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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genomics databases (non-vertebrate)

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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invertebrate genome databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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transcription factors and regulatory sites

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:01.651645

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gene expression

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:01.651645

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ontology and terminology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:01.651645

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gene transcripts

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:01.651645

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nucleic acid sequence transcription genomics invertebrate genome transcription factors and regulatory sites gene expression ontology and terminology gene transcripts