Insect Microsatellite Database
Names
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Insect Microsatellite Database
metasource: Fairsharing.org
version: FAIRsharing.org: InSatDb; Insect Microsatellite Database; DOI: https://doi.org/10.25504/FAIRsharing.mcqs21; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
InSatDb
metasource: Fairsharing.org
version: FAIRsharing.org: InSatDb; Insect Microsatellite Database; DOI: https://doi.org/10.25504/FAIRsharing.mcqs21; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
Insect Microsatellite Database
metasource: Fairsharing.orgversion: FAIRsharing.org: InSatDb; Insect Microsatellite Database; DOI: https://doi.org/10.25504/FAIRsharing.mcqs21; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
InSatDb
metasource: Fairsharing.orgversion: FAIRsharing.org: InSatDb; Insect Microsatellite Database; DOI: https://doi.org/10.25504/FAIRsharing.mcqs21; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
Insect Microsatellite Database
metasource: Fairsharing.orgversion: FAIRsharing.org: InSatDb; Insect Microsatellite Database; DOI: https://doi.org/10.25504/FAIRsharing.mcqs21; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
InSatDb
metasource: Fairsharing.orgversion: FAIRsharing.org: InSatDb; Insect Microsatellite Database; DOI: https://doi.org/10.25504/FAIRsharing.mcqs21; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
InSatDb, unlike many other microsatellite databases that cater largely to the needs of microsatellites as markers, presents an interactive interface to query information regarding microsatellite characteristics of five fully sequenced insect genomes (fruit-fly, honeybee, malarial mosquito, red-flour beetle and silkworm).
Description
More detailed information about this field from each metasource.
InSatDb, unlike many other microsatellite databases that cater largely to the needs of microsatellites as markers, presents an interactive interface to query information regarding microsatellite characteristics of five fully sequenced insect genomes (fruit-fly, honeybee, malarial mosquito, red-flour beetle and silkworm).
metasource: Fairsharing.orgversion: FAIRsharing.org: InSatDb; Insect Microsatellite Database; DOI: https://doi.org/10.25504/FAIRsharing.mcqs21; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
InSatDb, unlike many other microsatellite databases that cater largely to the needs of microsatellites as markers, presents an interactive interface to query information regarding microsatellite characteristics per se of five fully sequenced insect genomes (fruit-fly, honeybee, malarial mosquito, red-flour beetle and silkworm). InSatDb allows users to obtain microsatellites annotated with size (in bp and repeat units); genomic location (exon, intron, up-stream or transposon); nature (perfect or imperfect); and sequence composition (repeat motif and GC%). One can access microsatellite cluster (compound repeats) information, and a list of microsatellites with conserved flanking sequences (microsatellite family or paralogs). InSatDb is complete with the insects information, web links to find details, methodology and a tutorial. A separate Analysis section illustrates the comparative genomic analysis that can be carried out using the InSatDb output.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://www.cdfd.org.in/insatdbWebpage
More detailed information about this field from each metasource.
http://www.cdfd.org.in/insatdb
metasource: Fairsharing.orgversion: FAIRsharing.org: InSatDb; Insect Microsatellite Database; DOI: https://doi.org/10.25504/FAIRsharing.mcqs21; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://www.cdfd.org.in/insatdb/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
More detailed information about this field from each metasource.
InSatDb: a microsatellite database of fully sequenced insect genomes
PMID: 17082205
metasource: Fairsharing.org
version: FAIRsharing.org: InSatDb; Insect Microsatellite Database; DOI: https://doi.org/10.25504/FAIRsharing.mcqs21; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications
More detailed information about this field from each metasource.
InSatDb: a microsatellite database of fully sequenced insect genomes
PMID: 17082205
metasource: Fairsharing.org
version: FAIRsharing.org: InSatDb; Insect Microsatellite Database; DOI: https://doi.org/10.25504/FAIRsharing.mcqs21; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
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InSatDb: a microsatellite database of fully sequenced insect genomes
PubMed citations: 15.
15 articles citing: InSatDb: a microsatellite database of fully sequenced insect genomes
EWET: Data collection and interface for the genetic analysis of Echinococcus multilocularis based on EmsB microsatellite. PMID:28972978
APMicroDB: A microsatellite database of Acyrthosiphon pisum. PMID:28413782
De novo transcriptome analysis and microsatellite marker development for population genetic study of a serious insect pest, Rhopalosiphum padi (L.) (Hemiptera: Aphididae). PMID:28212394
A comprehensive view of the web-resources related to sericulture. PMID:27307138
LeishMicrosatDB: open source database of repeat sequences detected in six fully sequenced Leishmania genomes. PMID:25125444
MICdb3.0: a comprehensive resource of microsatellite repeats from prokaryotic genomes. PMID:24536078
FishMicrosat: a microsatellite database of commercially important fishes and shellfishes of the Indian subcontinent. PMID:24047532
HighSSR: high-throughput SSR characterization and locus development from next-gen sequencing data. PMID:22954626
Application of high-resolution DNA melting for genotyping in lepidopteran non-model species: Ostrinia furnacalis (Crambidae). PMID:22253755
Genome-based microsatellite development in the Culex pipiens complex and comparative microsatellite frequency with Aedes aegypti and Anopheles gambiae. PMID:20927334
Silkworm nucleotide databases--current trends and future prospects. PMID:18478085
Analysis of repetitive DNA distribution patterns in the Tribolium castaneum genome. PMID:18366801
Mosaic genome architecture of the Anopheles gambiae species complex. PMID:18043756
UgMicroSatdb: database for mining microsatellites from unigenes. PMID:17947328
EuMicroSatdb: a database for microsatellites in the sequenced genomes of eukaryotes. PMID:17623061
Tags:
Tags
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genome
metasource: Fairsharing.org
version: FAIRsharing.org: InSatDb; Insect Microsatellite Database; DOI: https://doi.org/10.25504/FAIRsharing.mcqs21; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
microsatellite
metasource: Fairsharing.org
version: FAIRsharing.org: InSatDb; Insect Microsatellite Database; DOI: https://doi.org/10.25504/FAIRsharing.mcqs21; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
nucleotide sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
coding and non-coding dna
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
invertebrate genome databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: InSatDb; Insect Microsatellite Database; DOI: https://doi.org/10.25504/FAIRsharing.mcqs21; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
microsatellite
metasource: Fairsharing.orgversion: FAIRsharing.org: InSatDb; Insect Microsatellite Database; DOI: https://doi.org/10.25504/FAIRsharing.mcqs21; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
nucleotide sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
coding and non-coding dna
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
invertebrate genome databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
genome microsatellite nucleic acid sequence coding and non-coding dna genomics invertebrate genome
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