WorfDB - Worm ORF Database

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WorfDB - Worm ORF Database

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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WORFDB

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.938941

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worfdb

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.938941

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Other names: WORFDB, worfdb

Predicted proteins from C. elegans

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Publications:

Publications

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C. elegans ORFeome version 3.1: increasing the coverage of ORFeome resources with improved gene predictions
PMID: 15489327

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.938941

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• C. elegans ORFeome version 3.1: increasing the coverage of ORFeome resources with improved gene predictions PubMed citations: 45.

  45 articles citing: C. elegans ORFeome version 3.1: increasing the coverage of ORFeome resources with improved gene predictions

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  Proximity labeling identifies LOTUS domain proteins that promote the formation of perinuclear germ granules in C. elegans. PMID:34730513

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  Protein interactome mapping in Caenorhabditis elegans. PMID:32984658

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  A functionally defined high-density NRF2 interactome reveals new conditional regulators of ARE transactivation. PMID:32911434

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  The full-length transcriptome of C. elegans using direct RNA sequencing. PMID:32024661

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  Maximizing binary interactome mapping with a minimal number of assays. PMID:31467278

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  A Myt1 family transcription factor defines neuronal fate by repressing non-neuronal genes. PMID:31386623

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  Gene2Function: An Integrated Online Resource for Gene Function Discovery. PMID:28663344

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  A gene-centered C. elegans protein-DNA interaction network provides a framework for functional predictions. PMID:27777270

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  A MultiSite Gateway Toolkit for Rapid Cloning of Vertebrate Expression Constructs with Diverse Research Applications. PMID:27500400

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  Large-Scale Functional RNAi Screen in C. elegans Identifies TGF-β and Notch Signaling Pathways as Modifiers of CACNA1A. PMID:27005779

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  A combined binary interaction and phenotypic map of C. elegans cell polarity proteins. PMID:26780296

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  Mapping the Protein-Protein Interactome Networks Using Yeast Two-Hybrid Screens. PMID:26621469

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  Computer-Assisted Transgenesis of Caenorhabditis elegans for Deep Phenotyping. PMID:26163188

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  TATN-1 mutations reveal a novel role for tyrosine as a metabolic signal that influences developmental decisions and longevity in Caenorhabditis elegans. PMID:24385923

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  Invertebrate models of dystonia. PMID:23814534

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  SH3 interactome conserves general function over specific form. PMID:23549480

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  Modular assembly of transposon integratable multigene vectors using RecWay assembly. PMID:23444141

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  The C. elegans rab family: identification, classification and toolkit construction. PMID:23185324

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  A MultiSite Gateway™ vector set for the functional analysis of genes in the model Saccharomyces cerevisiae. PMID:22994806

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  SLX-1 is required for maintaining genomic integrity and promoting meiotic noncrossovers in the Caenorhabditis elegans germline. PMID:22927825

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  High-throughput fluorescence-based isolation of live C. elegans larvae. PMID:22814389

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  RNA-seq analysis of the C. briggsae transcriptome. PMID:22772596

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  Gene-centered regulatory network mapping. PMID:22118281

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  Enhanced yeast one-hybrid assays for high-throughput gene-centered regulatory network mapping. PMID:22037705

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  Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. PMID:21611156

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  Methods and strategies for gene structure curation in WormBase. PMID:21543339

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  Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. PMID:21177976

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  Alternative trans-splicing of Caenorhabditis elegans sma-9/schnurri generates a short transcript that provides tissue-specific function in BMP signaling. PMID:20565799

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  Transgenic solutions for the germline. PMID:20169625

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  Global identification of protein kinase substrates by protein microarray analysis. PMID:20010933

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  Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome. PMID:19801531

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  A transcription elongation factor that links signals from the reproductive system to lifespan extension in Caenorhabditis elegans. PMID:19749979

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  Shifted Transversal Design smart-pooling for high coverage interactome mapping. PMID:19447967

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  Where have all the interactions gone? Estimating the coverage of two-hybrid protein interaction maps. PMID:18039026

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  Domain selection combined with improved cloning strategy for high throughput expression of higher eukaryotic proteins. PMID:17663785

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  Regulation of Caenorhabditis elegans lifespan by a proteasomal E3 ligase complex. PMID:17392428

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  hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. PMID:17207965

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  Role of T-box gene tbx-2 for anterior foregut muscle development in C. elegans. PMID:17005176

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  pWormgatePro enables promoter-driven knockdown by hairpin RNA interference of muscle and neuronal gene products in Caenorhabditis elegans. PMID:16432720

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  Biochemical and genetic analysis of the yeast proteome with a movable ORF collection. PMID:16322557

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  Generation of the Brucella melitensis ORFeome version 1.1. PMID:15489343

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  Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library. PMID:15489339

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  Human ORFeome version 1.1: a platform for reverse proteomics. PMID:15489335

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  High-throughput expression of C. elegans proteins. PMID:15489332

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  A gateway-compatible yeast one-hybrid system. PMID:15489331

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More detailed information about this field from each metasource. ×

genomics databases (non-vertebrate)

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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invertebrate genome databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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model organisms

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.938941

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genomics invertebrate genome model organisms