UgMicroSatdb

UniGene MicroSatellite database: short tandem repeats from various eukaryotic genomes

Description

More detailed information about this field from each metasource.

UniGene MicroSatellite database: short tandem repeats from various eukaryotic genomes

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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More detailed information about this field from each metasource.

nucleotide sequence databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

coding and non-coding dna

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Tandem Repeats Database

Tandem Repeats Database (TRDB) is a public repository of information on tandem repeats in genomic DNA and contains a variety of tools for their analysis.

SINEBase

A database of short interspersed elements (SINEs)

DoriC

DoriC regions in bacterial and archaeal genomes

GISSD

Group I Intron Sequence and Structure Database

L1Base

Functional annotation and prediction of LINE-1 elements

UCNEbase

A database of ultraconserved non-coding elements and gene regulatory blocks

Plant repeat database

Repetitive sequences in plant genomes

UTRome

3'UTRs and their functional elements in C. elegans

MethSMRT

DNA methylation data from single molecule, real-time sequencing

TranspoGene

Transposed elements influence on the transcriptome of seven vertebrates and invertebrates

VectorDB

Data available for download from the SGD site, be aware that data dates from 1997

Ciliate IES-MDS database

Macro- and micronuclear genes in spirotrichous ciliates

NPRD - Nucleosome Positioning Region Database

Nucleosome positioning region database

SNPSTR

The SNPSTR database contains the SNP-STR/microsatellite compound markers in the five model species, where sufficient SNP information exists in both of the NCBI and Ensembl databases. These species are ...

Insect Microsatellite Database

InSatDb, unlike many other microsatellite databases that cater largely to the needs of microsatellites as markers, presents an interactive interface to query information regarding microsatellite chara ...

PSMD

An extensive database for pan-species microsatellite investigation and marker development. A Django app for Pan-Species Microsatellite Database. Pan-Species Microsatellite Database. Microsatellites ...

TRBase

TRbase is a database relating tandem repeats to gene locations and disease genes in the human genome. This database identifies both perfect and imperfect tandem repeats of 1-2000 bp unit lengths. Tand ...

ProRepeat: An Integrated Repository for Studying Amino Acid Tandem Repeats in Proteins

ProRepeat is an integrated curated repository and analysis platform for in-depth research on the biological characteristics of amino acid tandem repeats. ProRepeat collects repeats from all proteins i ...

STRipy

A graphical application for detecting known pathogenic short tandem repeats in sequencing data

CORG - A database for COmparative Regulatory Genomics

Sequence conservation in non-coding, upstream regions of orthologous genes from man and mouse is likely to reflect common regulatory DNA sites. Motivated by this assumption we have delineated a catalo ...

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Tandem Repeats Database

SINEBase

DoriC

GISSD

L1Base

UCNEbase

Plant repeat database

UTRome

MethSMRT

TranspoGene

VectorDB

Ciliate IES-MDS database

NPRD - Nucleosome Positioning Region Database

SNPSTR

Insect Microsatellite Database

PSMD

TRBase

ProRepeat: An Integrated Repository for Studying Amino Acid Tandem Repeats in Proteins

STRipy

CORG - A database for COmparative Regulatory Genomics