GISSD

Description

More detailed information about this field from each metasource.

Group I Intron Sequence and Structure Database

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

DoriC

DoriC regions in bacterial and archaeal genomes

SINEBase

A database of short interspersed elements (SINEs)

MethSMRT

DNA methylation data from single molecule, real-time sequencing

L1Base

Functional annotation and prediction of LINE-1 elements

UCNEbase

A database of ultraconserved non-coding elements and gene regulatory blocks

UTRome

3'UTRs and their functional elements in C. elegans

Plant repeat database

Repetitive sequences in plant genomes

TranspoGene

Transposed elements influence on the transcriptome of seven vertebrates and invertebrates

UgMicroSatdb

UniGene MicroSatellite database: short tandem repeats from various eukaryotic genomes

VectorDB

Data available for download from the SGD site, be aware that data dates from 1997

Ciliate IES-MDS database

Macro- and micronuclear genes in spirotrichous ciliates

NPRD - Nucleosome Positioning Region Database

Nucleosome positioning region database

cncRNAdb

Coding and non-coding RNA

Synthetic Gene Database

The Synthetic Gene Database (http://www.evolvingcode.net/codon/sgdb/index.php) is a resource that has collected together sequence information on synthetic genes (i.e. genes that were designed conceptu ...

SNPSTR

The SNPSTR database contains the SNP-STR/microsatellite compound markers in the five model species, where sufficient SNP information exists in both of the NCBI and Ensembl databases. These species are ...

CORG - A database for COmparative Regulatory Genomics

Sequence conservation in non-coding, upstream regions of orthologous genes from man and mouse is likely to reflect common regulatory DNA sites. Motivated by this assumption we have delineated a catalo ...

Tandem Repeats Database

Tandem Repeats Database (TRDB) is a public repository of information on tandem repeats in genomic DNA and contains a variety of tools for their analysis.

DiProDB

Database for dinucleotide properties

TIGR Plant Transcript Assembly database

The TIGR Plant Transcript Assemblies (TA) database (http://plantta.tigr.org) uses expressed sequences collected from the NCBI GenBank Nucleotide database for the construction of transcript assemblies. ...

RAID

Human RNA-RNA and RNA-protein interactions

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