TranspoGene

Transposed elements influence on the transcriptome of seven vertebrates and invertebrates

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More detailed information about this field from each metasource.

Transposed elements influence on the transcriptome of seven vertebrates and invertebrates

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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More detailed information about this field from each metasource.

nucleotide sequence databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

coding and non-coding dna

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

SINEBase

A database of short interspersed elements (SINEs)

L1Base

Functional annotation and prediction of LINE-1 elements

UCNEbase

A database of ultraconserved non-coding elements and gene regulatory blocks

GISSD

Group I Intron Sequence and Structure Database

UTRome

3'UTRs and their functional elements in C. elegans

DoriC

DoriC regions in bacterial and archaeal genomes

MethSMRT

DNA methylation data from single molecule, real-time sequencing

UgMicroSatdb

UniGene MicroSatellite database: short tandem repeats from various eukaryotic genomes

Plant repeat database

Repetitive sequences in plant genomes

VectorDB

Data available for download from the SGD site, be aware that data dates from 1997

AREsite

AU-rich elements in vertebrate mRNA UTR sequences

Ciliate IES-MDS database

Macro- and micronuclear genes in spirotrichous ciliates

RsiteDB

RNA-binding sites database

NPRD - Nucleosome Positioning Region Database

Nucleosome positioning region database

ConSurf-DB

Sequence conservation profiles of the proteins of known structures

SNPSTR

The SNPSTR database contains the SNP-STR/microsatellite compound markers in the five model species, where sufficient SNP information exists in both of the NCBI and Ensembl databases. These species are ...

CORG - A database for COmparative Regulatory Genomics

Sequence conservation in non-coding, upstream regions of orthologous genes from man and mouse is likely to reflect common regulatory DNA sites. Motivated by this assumption we have delineated a catalo ...

ECRbase

Evolutionary conservation of DNA sequences provides a tool for the identification of functional elements in genomes. We have created a database of evolutionary conserved regions in vertebrate genomes, ...

Tandem Repeats Database

Tandem Repeats Database (TRDB) is a public repository of information on tandem repeats in genomic DNA and contains a variety of tools for their analysis.

CEGA

CEGA, (Conserved Elements from Genomic Alignments), is a database of conserved vertebrate elements. This database provides acces to precomputed sets of conserved sequences from different species and a ...

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SINEBase

L1Base

UCNEbase

GISSD

UTRome

DoriC

MethSMRT

UgMicroSatdb

Plant repeat database

VectorDB

AREsite

Ciliate IES-MDS database

RsiteDB

NPRD - Nucleosome Positioning Region Database

ConSurf-DB

SNPSTR

CORG - A database for COmparative Regulatory Genomics

ECRbase

Tandem Repeats Database

CEGA