Ciliate IES-MDS database

GISSD

Group I Intron Sequence and Structure Database

SINEBase

A database of short interspersed elements (SINEs)

UCNEbase

A database of ultraconserved non-coding elements and gene regulatory blocks

L1Base

Functional annotation and prediction of LINE-1 elements

DoriC

DoriC regions in bacterial and archaeal genomes

UgMicroSatdb

UniGene MicroSatellite database: short tandem repeats from various eukaryotic genomes

UTRome

3'UTRs and their functional elements in C. elegans

MethSMRT

DNA methylation data from single molecule, real-time sequencing

TranspoGene

Transposed elements influence on the transcriptome of seven vertebrates and invertebrates

NPRD - Nucleosome Positioning Region Database

Nucleosome positioning region database

VectorDB

Data available for download from the SGD site, be aware that data dates from 1997

Synthetic Gene Database

The Synthetic Gene Database (http://www.evolvingcode.net/codon/sgdb/index.php) is a resource that has collected together sequence information on synthetic genes (i.e. genes that were designed conceptu ...

SNPSTR

The SNPSTR database contains the SNP-STR/microsatellite compound markers in the five model species, where sufficient SNP information exists in both of the NCBI and Ensembl databases. These species are ...

TIGR Plant Transcript Assembly database

The TIGR Plant Transcript Assemblies (TA) database (http://plantta.tigr.org) uses expressed sequences collected from the NCBI GenBank Nucleotide database for the construction of transcript assemblies. ...

CORG - A database for COmparative Regulatory Genomics

Sequence conservation in non-coding, upstream regions of orthologous genes from man and mouse is likely to reflect common regulatory DNA sites. Motivated by this assumption we have delineated a catalo ...

Spliceosome Database

Tandem Repeats Database

Tandem Repeats Database (TRDB) is a public repository of information on tandem repeats in genomic DNA and contains a variety of tools for their analysis.

DiProDB

Database for dinucleotide properties

PANDIT

PANDIT is a collection of multiple sequence alignments and phylogenetic trees covering many common protein domains. It contains the seed protein sequence alignments from the Pfam-A (curated families) ...