NPRD - Nucleosome Positioning Region Database

Description

More detailed information about this field from each metasource.

Nucleosome positioning region database

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

NucMap

NucMap is a database of genome-wide nucleosome positioning across multiple species. Based on raw sequence data from published studies, NucMap integrates, analyzes, and visualizes nucleosome positionin ...

PDBSite

3D structure of protein functional sites

SINEBase

A database of short interspersed elements (SINEs)

Plant repeat database

Repetitive sequences in plant genomes

GISSD

Group I Intron Sequence and Structure Database

UCNEbase

A database of ultraconserved non-coding elements and gene regulatory blocks

L1Base

Functional annotation and prediction of LINE-1 elements

DoriC

DoriC regions in bacterial and archaeal genomes

UTRome

3'UTRs and their functional elements in C. elegans

MethSMRT

DNA methylation data from single molecule, real-time sequencing

Ciliate IES-MDS database

Macro- and micronuclear genes in spirotrichous ciliates

NucPosDB

A database of nucleosome positioning in vivo and nucleosomics of cell-free DNA.

TranspoGene

Transposed elements influence on the transcriptome of seven vertebrates and invertebrates

UgMicroSatdb

UniGene MicroSatellite database: short tandem repeats from various eukaryotic genomes

VectorDB

Data available for download from the SGD site, be aware that data dates from 1997

Synthetic Gene Database

The Synthetic Gene Database (http://www.evolvingcode.net/codon/sgdb/index.php) is a resource that has collected together sequence information on synthetic genes (i.e. genes that were designed conceptu ...

Indel Flanking Region Database

Indel Flanking Region Database is an online resource for indels (insertion/deletions) and the flanking regions of proteins in SCOP superfamilies. It aims at providing a comprehensive dataset for analy ...

ACTIVITY

ACTIVITY, a database on DNA site sequences with known activity magnitudes, measurement systems and sequence-activity relationships under fixed experimental conditions is additionally adapted to applic ...

TIGR Plant Transcript Assembly database

The TIGR Plant Transcript Assemblies (TA) database (http://plantta.tigr.org) uses expressed sequences collected from the NCBI GenBank Nucleotide database for the construction of transcript assemblies. ...

SNPSTR

The SNPSTR database contains the SNP-STR/microsatellite compound markers in the five model species, where sufficient SNP information exists in both of the NCBI and Ensembl databases. These species are ...

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