L1Base

Description

More detailed information about this field from each metasource.

Functional annotation and prediction of LINE-1 elements

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

SINEBase

A database of short interspersed elements (SINEs)

UCNEbase

A database of ultraconserved non-coding elements and gene regulatory blocks

UTRome

3'UTRs and their functional elements in C. elegans

GISSD

Group I Intron Sequence and Structure Database

DoriC

DoriC regions in bacterial and archaeal genomes

TranspoGene

Transposed elements influence on the transcriptome of seven vertebrates and invertebrates

MethSMRT

DNA methylation data from single molecule, real-time sequencing

CORG - A database for COmparative Regulatory Genomics

Sequence conservation in non-coding, upstream regions of orthologous genes from man and mouse is likely to reflect common regulatory DNA sites. Motivated by this assumption we have delineated a catalo ...

Plant repeat database

Repetitive sequences in plant genomes

UgMicroSatdb

UniGene MicroSatellite database: short tandem repeats from various eukaryotic genomes

VectorDB

Data available for download from the SGD site, be aware that data dates from 1997

SpliceNest

A tool for visualizing splicing of genes from EST data

Ciliate IES-MDS database

Macro- and micronuclear genes in spirotrichous ciliates

ConsensusPathDB

Database for integration of human functional interactions

NPRD - Nucleosome Positioning Region Database

Nucleosome positioning region database

GeneNest

Gene indices of human, mouse, zebrafish, Arabidopsis, and Drosophila

SNPSTR

The SNPSTR database contains the SNP-STR/microsatellite compound markers in the five model species, where sufficient SNP information exists in both of the NCBI and Ensembl databases. These species are ...

CEGA

CEGA, (Conserved Elements from Genomic Alignments), is a database of conserved vertebrate elements. This database provides acces to precomputed sets of conserved sequences from different species and a ...

Tandem Repeats Database

Tandem Repeats Database (TRDB) is a public repository of information on tandem repeats in genomic DNA and contains a variety of tools for their analysis.

AREsite

AU-rich elements in vertebrate mRNA UTR sequences

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