FAIRsharing.9fz3g3; Last edited: April 26, 2021, 8:26 a.m.; Last accessed: Jan 03 2022 7:06 p.m.

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Other names: TRDB

Tandem Repeats Database (TRDB) is a public repository of information on tandem repeats in genomic DNA and contains a variety of tools for their analysis.

Webpage:

http://tandem.bu.edu/cgi-bin/trdb/trdb.exe

Licence:

Name: TRDB Login required for access
URL: https://tandem.bu.edu/cgi-bin/trdb/trdb.exe

Publications:

Publications
More detailed information about this field from each metasource.

TRDB--the Tandem Repeats Database
PMID: 17175540
metasource: Fairsharing.org
version: FAIRsharing.org: TRDB; Tandem Repeats Database; DOI: https://doi.org/10.25504/FAIRsharing.9fz3g3; Last edited: April 26, 2021, 8:26 a.m.; Last accessed: Jan 03 2022 7:06 p.m.

TRDB--the Tandem Repeats Database PubMed citations: 80.

80 articles citing: TRDB--the Tandem Repeats Database

Ribodysgenesis: sudden genome instability in the yeast Saccharomyces cerevisiae arising from RNase H2 cleavage at genomic-embedded ribonucleotides. PMID:35748861
Insights into the inhibition of type I-F CRISPR-Cas system by a multifunctional anti-CRISPR protein AcrIF24. PMID:35411005
The Genome of Rhyzopertha dominica (Fab.) (Coleoptera: Bostrichidae): Adaptation for Success. PMID:35328000
Bacterial N4-methylcytosine as an epigenetic mark in eukaryotic DNA. PMID:35228526
Genome-scale patterns in the loss of heterozygosity incidence in Saccharomyces cerevisiae. PMID:35212738
A CTCF-Binding Element and Histone Deacetylation Cooperatively Maintain Chromatin Loops, Linking to Long-Range Gene Regulation in Cancer Genomes. PMID:35127534
Genome and Metabolome MS-Based Mining of a Marine Strain of Aspergillus affinis. PMID:34947073
MicroSEC filters sequence errors for formalin-fixed and paraffin-embedded samples. PMID:34912045
Genome-wide characterization of human minisatellite VNTRs: population-specific alleles and gene expression differences. PMID:33849068
A chromosome-level genome assembly for the Pacific oyster Crassostrea gigas. PMID:33764468
A mosquito small RNA genomics resource reveals dynamic evolution and host responses to viruses and transposons. PMID:33419731
Dark Matter of Primate Genomes: Satellite DNA Repeats and Their Evolutionary Dynamics. PMID:33352976
Genetic Diversity of the Noncoding Control Region of the Novel Human Polyomaviruses. PMID:33297530
Genomics Reveals the Metabolic Potential and Functions in the Redistribution of Dissolved Organic Matter in Marine Environments of the Genus Thalassotalea. PMID:32937826
Satellite DNA-like repeats are dispersed throughout the genome of the Pacific oyster Crassostrea gigas carried by Helentron non-autonomous mobile elements. PMID:32934255
Molecular detection and genetic characteristics of Babesia gibsoni in dogs in Shaanxi Province, China. PMID:32698848
The inflated mitochondrial genomes of siphonous green algae reflect processes driving expansion of noncoding DNA and proliferation of introns. PMID:31915577
K-mer-Based Motif Analysis in Insect Species across Anopheles, Drosophila, and Glossina Genera and Its Application to Species Classification. PMID:31827584
Complete genome analysis of Vibrio mimicus strain SCCF01, a highly virulent isolate from the freshwater catfish. PMID:31826705
MSDB: a comprehensive, annotated database of microsatellites. PMID:31599331
Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases. PMID:31584084
RB1 Deletion in Retinoblastoma Protein Pathway-Disrupted Cells Results in DNA Damage and Cancer Progression. PMID:31138663
Estimation of duplication history under a stochastic model for tandem repeats. PMID:30727948
Tandem Repeats Contribute to Coding Sequence Variation in Bumblebees (Hymenoptera: Apidae). PMID:30398620
GtTR: Bayesian estimation of absolute tandem repeat copy number using sequence capture and high throughput sequencing. PMID:30012093
Fluorescence spectroscopic detection and measurement of single telomere molecules. PMID:30010842
Dynamics of sister chromatid resolution during cell cycle progression. PMID:29695489
An intronic VNTR affects splicing of ABCA7 and increases risk of Alzheimer's disease. PMID:29589097
Analysis of microRNA profile of Anopheles sinensis by deep sequencing and bioinformatic approaches. PMID:29530087
STRScan: targeted profiling of short tandem repeats in whole-genome sequencing data. PMID:28984185
Satellite DNA: An Evolving Topic. PMID:28926993
Genomic structure and insertion sites of Helicobacter pylori prophages from various geographical origins. PMID:28205536
Polycomb repressive complex 1 provides a molecular explanation for repeat copy number dependency in FSHD muscular dystrophy. PMID:28040729
New Multilocus Variable-Number Tandem-Repeat Analysis (MLVA) Scheme for Fine-Scale Monitoring and Microevolution-Related Study of Ralstonia pseudosolanacearum Phylotype I Populations. PMID:28003195
The cancer-associated CTCFL/BORIS protein targets multiple classes of genomic repeats, with a distinct binding and functional preference for humanoid-specific SVA transposable elements. PMID:27588042
Pancreatic SEC23B deficiency is sufficient to explain the perinatal lethality of germline SEC23B deficiency in mice. PMID:27297878
Identification and characterization of the highly polymorphic locus D14S739 in the Han Chinese population. PMID:26526885
Identification and characterization of a minisatellite contained within a novel miniature inverted-repeat transposable element (MITE) of Porphyromonas gingivalis. PMID:26448788
Genome-wide analysis of tandem repeats in Tribolium castaneum genome reveals abundant and highly dynamic tandem repeat families with satellite DNA features in euchromatic chromosomal arms. PMID:26428853
Hybrid de novo tandem repeat detection using short and long reads. PMID:26399998
A survey of tandem repeat instabilities and associated gene expression changes in 35 colorectal cancers. PMID:26376692
Complete Genome Sequence of Sporisorium scitamineum and Biotrophic Interaction Transcriptome with Sugarcane. PMID:26065709
PTGBase: an integrated database to study tandem duplicated genes in plants. PMID:25797062
Development and testing of new gene-homologous EST-SSRs for Eucalyptus gomphocephala (Myrtaceae). PMID:25202574
VNTRseek-a computational tool to detect tandem repeat variants in high-throughput sequencing data. PMID:25056320
HeteroGenome: database of genome periodicity. PMID:24857969
MICdb3.0: a comprehensive resource of microsatellite repeats from prokaryotic genomes. PMID:24536078
Four Promoters of IRF5 Respond Distinctly to Stimuli and are Affected by Autoimmune-Risk Polymorphisms. PMID:24223576
FishMicrosat: a microsatellite database of commercially important fishes and shellfishes of the Indian subcontinent. PMID:24047532
Development and application of MLVA methods as a tool for inter-laboratory surveillance. PMID:24008231
GTAG- and CGTC-tagged palindromic DNA repeats in prokaryotes. PMID:23902135
Multilocus variable-number-tandem-repeats analysis (MLVA) distinguishes a clonal complex of Clavibacter michiganensis subsp. michiganensis strains isolated from recent outbreaks of bacterial wilt and canker in Belgium. PMID:23738754
Disruption of the Sec24d gene results in early embryonic lethality in the mouse. PMID:23596517
Altered splicing of ATP6AP2 causes X-linked parkinsonism with spasticity (XPDS). PMID:23595882
Stimulation of gross chromosomal rearrangements by the human CEB1 and CEB25 minisatellites in Saccharomyces cerevisiae depends on G-quadruplexes or Cdc13. PMID:23133402
A repetitive elements perspective in Polycomb epigenetics. PMID:23060903
Direct mapping of symbolic DNA sequence into frequency domain in global repeat map algorithm. PMID:22977183
The mitochondrial genome of Paraminabea aldersladei (Cnidaria: Anthozoa: Octocorallia) supports intramolecular recombination as the primary mechanism of gene rearrangement in octocoral mitochondrial genomes. PMID:22975720
HighSSR: high-throughput SSR characterization and locus development from next-gen sequencing data. PMID:22954626
Transposable elements are a significant contributor to tandem repeats in the human genome. PMID:22792041
Comparative genome analysis of 19 Ureaplasma urealyticum and Ureaplasma parvum strains. PMID:22646228
Long identical multispecies elements in plant and animal genomes. PMID:22496592
Gene discovery in the threatened elkhorn coral: 454 sequencing of the Acropora palmata transcriptome. PMID:22216101
Condensin dysfunction in human cells induces nonrandom chromosomal breaks in anaphase, with distinct patterns for both unique and repeated genomic regions. PMID:22179743
Large tandem, higher order repeats and regularly dispersed repeat units contribute substantially to divergence between human and chimpanzee Y chromosomes. PMID:21103868
Congenital insensitivity to pain: novel SCN9A missense and in-frame deletion mutations. PMID:20635406
TRedD--a database for tandem repeats over the edit distance. PMID:20624712
TRStalker: an efficient heuristic for finding fuzzy tandem repeats. PMID:20529928
Database of exact tandem repeats in the Zebrafish genome. PMID:20515480
Genome-wide analysis of tandem repeats in Daphnia pulex--a comparative approach. PMID:20433735
Highly conserved motifs in non-coding regions of Sirevirus retrotransposons: the key for their pattern of distribution within and across plants? PMID:20132532
MouseIndelDB: a database integrating genomic indel polymorphisms that distinguish mouse strains. PMID:19933259
DNaseI hypersensitivity at gene-poor, FSH dystrophy-linked 4q35.2. PMID:19820107
Triplet repeat length bias and variation in the human transcriptome. PMID:19805156
Rapid evolution of mouse Y centromere repeat DNA belies recent sequence stability. PMID:19737860
Telomere organization in the ligninolytic basidiomycete Pleurotus ostreatus. PMID:19114509
Characterization of the differentially methylated region of the Impact gene that exhibits Glires-specific imprinting. PMID:19014519
Analysis of the largest tandemly repeated DNA families in the human genome. PMID:18992157
Comparative analyses of human single- and multilocus tandem repeats. PMID:18562644
Family-based association analysis of functional VNTR polymorphisms in the dopamine transporter gene in migraine with and without aura. PMID:17690944

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deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: TRDB; Tandem Repeats Database; DOI: https://doi.org/10.25504/FAIRsharing.9fz3g3; Last edited: April 26, 2021, 8:26 a.m.; Last accessed: Jan 03 2022 7:06 p.m.

tandem repeat
metasource: Fairsharing.org
version: FAIRsharing.org: TRDB; Tandem Repeats Database; DOI: https://doi.org/10.25504/FAIRsharing.9fz3g3; Last edited: April 26, 2021, 8:26 a.m.; Last accessed: Jan 03 2022 7:06 p.m.

nucleotide sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

coding and non-coding dna
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

dna tandem repeat nucleic acid sequence coding and non-coding dna

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