Tag: epigenetics


Found 65 sources
Source Match ReputationScore*

ENCODE Project


The ENCODE (Encyclopedia of DNA Elements) Consortium is an international collaboration of research groups funded by the National Human Genome Research Institute (NHGRI). The goal of ENCODE is to build a comprehensive parts list of functional elements ...
100%

Functional ANnoTation Of the Mammalian genome Database


FANTOM (Functional ANnoTation Of the Mammalian genome) is a worldwide collaborative project aiming at identifying all functional elements in mammalian genomes.
97%

Super-Enhancer Archive


SEA (Super-Enhancer Archive) is a web-based comprehensive resource focusing on the collection, storage and online analysis of super-enhancers. It focuses on integrating super-enhancers in multiple species and annotating their potential roles in the r ...
77%

MethylomeDB


This resource details DNA methylation profiles in human and mouse brain. This database includes genome-wide DNA methylation profiles for human and mouse brains. The DNA methylation profiles were generated by Methylation Mapping Analysis by Paired-end ...
77%

Human Histone Database


HIstome (Human histone database) is a freely available, specialist, electronic database dedicated to display information about human histone variants, sites of their post-translational modifications and about various histone modifying enzymes.
75%

Human disease methylation database


The human disease methylation database, DiseaseMeth is a web based resource focused on the aberrant methylomes of human diseases. Until recently, bulks of large-scale data are avaible and are increasingly grown, from which more information can be min ...
71%

Geneimprint


Catalogue of genes (from different species including human) that contains general information about a gene as well as whether it is imprinted and which allele is expressed.
70%

piRBase


piRBase stores information on piRNAs and piRNA-associated data to support piRNA functional analysis.
69%

DNA Methylation Interactive Visualization Database


DNMIVD is a comprehensive annotation and interactive visualization database for DNA methylation profile of diverse human cancer constructed with high throughput microarray data from TCGA and GEO databases, and it also integrates some data from Pancan ...
69%

Genomic Expression Archive


Genomic Expression Archive (GEA) is a public database of functional genomics data such as gene expression, epigenetics and genotyping SNP array. Both microarray- and sequence-based data are accepted in the MAGE-TAB format in compliance with MIAME and ...
68%

HHMD


Human Histone Modification Database
65%

NGSmethDB


Next-generation sequencing single-cytosine-resolution DNA methylation data
65%

NCBI Epigenomics


>>>!!! <<< The Epigenomics database was retired on June 1, 2016. All epigenomics data are available in our GEO resource https://www.ncbi.nlm.nih.gov/geo >>> !!! <<< The Epigenomics database provides genomics maps of stable and reprogrammable nucl ...
64%

CPLM


As a reversible post-translational modification (PTM) discovered decades ago, protein lysine acetylation was known for its regulation of transcription through the modification of histones. Recent studies discovered that lysine acetylation targets bro ...
64%

HLungDB


Database of Human Lung Cancer Research
64%

dbMAE


Autosomal monoallelic expression (MAE) refers to mitotically stable, epigenetically controlled allele-specific expression of autosomal genes, with the initial non-predetermined ('random') choice of thetranscriptional activity of the two alleles maint ...
63%

LncTarD


A manually-curated database of experimentally-supported functional lncRNA-target regulations in human diseases. Search and download the information for the Mutual exclusivity. MutExGenome is a database of Mutual Exclusive mutations in mutiple specie ...
62%

DNA Methylation Database


The database contains information about the occurrence of methylated cytosines in the DNA.
62%

TFBSshape


TFBSshape provides DNA shape features for transcription factor binding sites (TFBSs) that in addtion to sequence features, usually in the form of position weight matrices (PWMs), characterize DNA binding specificities of transcription factors (TFs) f ...
61%

DNAtraffic


A database for systems biology of DNA dynamics during the cell life.
60%

EpimiR


A database of curated mutual regulation between miRNAs and epigenetic modifications.
60%

PhenoModifier


PhenoModifier is a genetic modifier database for elucidating the genetic basis of human phenotypic variation. PhenoModifier provides a more complete spectrum of genetic factors contributing to human phenotypic variation and the portal has a broad sci ...
59%

Mammalian Promoter Database (MPromDb)


Curated database to annotate gene promoters identified from ChIP-seq results. Users can search the database based on gene id/symbol, or by specific tissue/cell type and filter results based on any combination of tissue/cell specificity, Known/Novel, ...
59%

m7GHub


Deciphering the location, regulation and pathogenesis of internal mRNA N7-methylguanosine (m7G) sites in human. Search by RsID, Gene, Region or Disease:. Links MeT-DB Whistle DRUM DRRMSDB. A database for the disease-associated genetic variants tha ...
59%

CRISP-view


High-throughput genetic screening based on CRISPR/Cas9 or RNA-interference (RNAi) enables the exploration of genes associated with the phenotype of interest on a large scale. The rapid accumulation of public available genetic screening data provides ...
59%

3DIV


Three-dimensional (3D) chromatin structure is an emerging paradigm for understanding gene regulation mechanisms. Hi-C (high-throughput chromatin conformation capture), a method to detect long-range chromatin interactions, allows extensive genome-wide ...
59%

Mediterranean Founder Mutation Database


A comprehensive database established to offer a web-based access to founder mutation data in Mediterranean population. The database provides an overview about the spectrum of founder mutations found in Mediterranean population to the scientific commu ...
58%

crisprSQL


CRISPR/Cas9 Off-Target Cleavage Assays
58%

ATACdb


Human Assay-for-Transposase-Accessible Chromatin data
57%

MSK-KP


Making Omics Data Useful to the Broader Scientific Community. Metabolic Disorders Knowledge Portal. ||| CORRECT NAME OF TOOL COULD ALSO BE 'MSK-KP'
57%

CHG


CHG is a systematically integrated database of cancer hallmark genes. The database focuses on integrating hallmark genes in a systematic, standard way and annotates the potential roles of the hallmark genes in cancer processes.
56%

3DSNP


3DSNP is a database for comprehensively annotating the regulatory function of human noncoding SNPs by exploring their 3D interactions with genes and genetically associated SNPs mediated by chromatin loops. 3DSNP integrates Hi-C data together with a v ...
55%

ConsRM


ConsRM is a collection and large-scale prediction of the evolutionarily conserved RNA methylation sites, with implications for the functional epitranscriptome.
55%

interface-CancerDAP


Identifying subpathway signatures for individualized anticancer drug response by integrating multi-omics data | CancerDAP is a database molecularly characterizing subpathways involved in cellular response to 191 anticancer drugs | 1 Prospect the deta ...
55%

Structural Genomics of Histone Tail Recognition


The structural genomics of histone tail recognition web server is an open access resource that presents within mini articles all publicly available experimental structures of histone tails in complex with human proteins. Each article is composed of i ...
55%

dbMMR-Chinese


Variants of DNA mismatch repair genes derived from 33,998 Chinese individuals with and without cancer reveal their highly ethnic-specific nature. An open-access database of DNA mismatch repair (MMR) gene variants in Chinese population. DNA mismatch ...
55%

TcoFBase


A comprehensive database for decoding the regulatory transcription co-factors in human and mouse.
53%

ATdb


Autophagy and Tumor Database (ATdb) is a database used to compile the published information concerning autophagy and tumor research. Such a database can be used for optaining an in-depth understanding of the complex correlations between autophagy and ...
53%

TwinsUK


TwinsUK follows the lives of adult twins to understand how genetic variation relates to health and ageing. Over 30 years, collected data comprises self-reported, physical and cognitive measures, biochemical measures, 'omics and a wealth of biosamples ...
52%

OncoDB


An interactive online database for analysis of gene expression and viral infection in cancer.
52%

FusionGDB 2.0


Fusion gene annotation updates aided by deep learning.
52%

AddictGene


AddictGene is an integrated knowledge base for differentially expressed genes associated with psychostimulants,
52%

KVarPredDB


A database for predicting pathogenicity of missense sequence variants of keratin genes associated with genodermatoses.
52%

The EPIC-Norfolk Study


The EPIC Norfolk study is a population-based prospective cohort study. EPIC-Norfolk is part of the European Prospective Investigation of Cancer (EPIC), a large multi-centre cohort study with participants enrolled from 23 centres across Europe
50%

GUIdEStaR


GUIdEStaR (G-quadruplex, uORF, IRES, Epigenetics, Small RNA, Repeats) is the integrated metadatabase in conjunction with neural network methods.
48%

PhenoScanner


Database of human genotype-phenotype associations.
48%

MethBase


A reference methylome database for different organisms that is created from public BS-seq datasets.
48%

Haloarchaeal Genomes


Haloarchaeal genomes database.
48%

bacteria.guru


Comparative transcriptomics and co-expression database for bacterial pathogens.
48%

EyeDiseases


An integrated resource for dedicating to genetic variants, gene expression and epigenetic factors of human eye diseases.
48%

NucPosDB


A database of nucleosome positioning in vivo and nucleosomics of cell-free DNA.
48%

CpGmotifs


CpGmotifs is a tool to discover DNA motifs associated to CpG methylation events.
48%

ADVP


ADVP is a platform for the public community to browse, search and understand Alzheimer's Disease genetics findings easily. .
48%

BCGene


BCGene is a online database for brain cancer-implicated genes: exploring the subtype-specific mechanisms of brain cancer
48%

Gene4PD


a comprehensive genetic database of Parkinson's disease. Gene4PD: an integrative genomic database and analytic platform for Parkinson's disease. Rare variants identified from PD patients.
48%

FinaleDB


FinaleDB (FragmentatIoN AnaLysis of cEll-free DNA DataBase) is a comprehensive cell-free DNA (cfDNA) fragmentation pattern database to host uniformly processed and quality controlled paired-end cfDNA WGS datasets.
48%

CATA


CATA (The chromatin accessibility of cancer database) is a comprehensive Cancer ATAC-seq database that aim to provided a large number of available resources on cancer ATAC-seq datas. The database was annotated with potential functions of ATAC-Peak in ...
48%

ASMdb


Allele-Specific DNA Methylation Databases (ASMdb) is a comprehensive database for allele-specific DNA methylation in diverse organisms. ASMdb is aiming to provide a comprehensive resource and a web tool for showing the DNA methylation level and diffe ...
48%

ADEx: Autoimmune Diseases Explorer


ADEx: Autoimmune Diseases Explorer is a comprehensive and centralized database for exploring omics data in Autoimmune Diseases. The database that integrates 82 curated transcriptomics and methylation studies covering 5609 samples for some of the most ...
48%

CGGA


The Chinese Glioma Genome Atlas (CGGA) is a user-friendly web application for data storage and analysis to explore brain tumors datasets. This database includes the whole-exome sequencing, DNA methylation, mRNA sequencing, mRNA microarray and microRN ...
48%

BART Cancer


BART Cancer Database is a web resource designed to display putative transcriptional regulators (TRs) that are responsible for up and downregulation of genes in 15 different cancer types in The Cancer Genome Atlas. BART Cancer uses BART (Binding Analy ...
48%

GRONS


A comprehensive genetic resource of nicotine and smoking. Genetic resources of nicotine and smoking. Genetic Resources Of Nicotine and Smoking (GRONS) is a database devoted to provide a comprehensive and systematic collection of cross-platform gene ...
48%

REPIC


A database for exploring N6-methyladenosine methylome. REPIC (RNA Epitranscriptome Collection) is a database dedicated to provide a new resource to investigate potential functions and mechanisms of N6-adenosine methylation (m6A) modifications. Curre ...
48%

MFGA


The Male Fertility Gene Atlas – A web tool for collecting and integrating data about epi-/genetic causes of male infertility. The Male Fertility Gene Atlas (MFGA) is a public platform for providing a fast, simple and straightforward access to OMICS ...
48%

ORSO


A data-driven social network connecting scientists to genomics datasets. ORSO (Online Resource for Social Omics) is a web application designed to help users find next generation sequencing (NGS) datasets relevant to their research interests. ORSO per ...
48%

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