Other names: nucposdb
A database of nucleosome positioning in vivo and nucleosomics of cell-free DNA.
dna packaging epigenetics chip-seq cell biology genetic variation
Nucleosome positioning region database
FinaleDB (FragmentatIoN AnaLysis of cEll-free DNA DataBase) is a comprehensive cell-free DNA (cfDNA) fragmentation pattern database to host uniformly processed and quality controlled paired-end cfDNA ...
Epigenetic alterations, including 5-methylcytosine (5mC), 5-hydroxymethylcytosine (5hmC) and nucleosome positioning (NP), in cell-free DNA (cfDNA) have been widely observed in human diseases, and many ...
We developed a method, ChIP-sequencing (ChIP-seq), combining chromatin immunoprecipitation (ChIP) and massively parallel sequencing to identify mammalian DNA sequences bound by transcription factors i ...
NucMap is a database of genome-wide nucleosome positioning across multiple species. Based on raw sequence data from published studies, NucMap integrates, analyzes, and visualizes nucleosome positionin ...
A comprehensive database of nucleosome organization referenced landscapes in mammalian genomes.
The Human Genetic Variation Database (HGVD) aims to provide a central resource to archive and display Japanese genetic variation and association between the variation and transcription level of genes. ...
The Cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research. Its scope includes: Immortalized cell lines; naturally immortal cell lines (e ...
CellO (Cell Ontology-based classification) is a Python package for performing cell type classification of human RNA-seq data. CellO makes hierarchical predictions against the Cell Ontology. These clas ...
SHOGoiN Cell Database is a repository for accumulating and integrating diverse human cell information to support a wide range of cell research at the single-cell resolution. It is an extension of the ...
A web database for sequence and shape motif analyses and identification.
Database of human missense variants mapped to 3D protein structures.
A knowledgebase of cellular drug response.
Database which collects human and mouse embryonic stem cell related datasets. These datasets cover perturbation (both knock-down and overexpression) and chromatin immunoprecipitation (ChIP) experiment ...
MIATE/invivo defines a minimum set of metadata requirements for an in vivo animal toxicology experiment and recommended ontologies. It is intended to standardize (meta)data collection for traditional ...
Human Assay-for-Transposase-Accessible Chromatin data
Computational modelling of mammalian cell cycle regulation is a challenging task, which requires comprehensive knowledge on many interrelated processes in the cell. We have developed a web-based integ ...
A curated repository of cell types with multifaceted characterization.
A knowledgebase and transparency tool for minimum information in spheroid identity.
The Cell Line Ontology (CLO) is a community-driven ontology that is developed to standardize and integrate cell line information and support computer-assisted reasoning. Thousands of cell lines have b ...