Other names: dbembryo
A dbEmbryo multi-omics database for analyses of synergistic regulation in early mammalian embryo development.
epigenetics transcription factors and regulatory sites gene regulation chip-seq chromosome conformation capture
CancerCRCdb is a comprehensive database of human core regulatory circuitry.
Integrated multi-omics database of human and mouse early embryo.
PRODORIC is a comprehensive database about gene regulation and gene expression in prokaryotes. It includes a manually curated and unique collection of transcription factor binding sites.
A database of enhancer mediated feed-forward loops for human and mouse.
Gene regulation in bacteriophages
A comprehensive database for regulations of human transcription factors and their targets. Transcription factors (TFs) as key regulators could modulate the expression of target genes by binding to sp ...
EpiRegio is a resource of Regulatory EleMents (REMs) associated to protein coding, and non-protein coding genes. For a detailed documentation, please read our documentation.
PAZAR is a software framework for the construction and maintenance of regulatory sequence data annotations; a framework which allows multiple boutique databases to function independently within a larg ...
We developed a method, ChIP-sequencing (ChIP-seq), combining chromatin immunoprecipitation (ChIP) and massively parallel sequencing to identify mammalian DNA sequences bound by transcription factors i ...
A database of gene expression patterns in the Drosophila terminalia. An Atlas of Transcription Factors Expressed in Male Pupal Terminalia of Drosophila melanogaster.
A positive miRNA-target regulations database.
ChIP-seq-based database of human transcription factor binding sites and the topological arrangements of the proteins bound to them.
Human Assay-for-Transposase-Accessible Chromatin data
YEASTRACT+ combines the existing database information of all yeast species, providing bioinformatics tools for the prediction and visualization of gene and genomic regulation based on orthologous regu ...
Curated database to annotate gene promoters identified from ChIP-seq results. Users can search the database based on gene id/symbol, or by specific tissue/cell type and filter results based on any com ...
Database for Human Transcription Co-Factors
Transcription Factor Database of eukaryotic cis-acting regulatory DNA elements and trans-acting factors; free for non-commercial use.
A comprehensive enrichment analysis software for human genomic regions.
CATA (The chromatin accessibility of cancer database) is a comprehensive Cancer ATAC-seq database that aim to provided a large number of available resources on cancer ATAC-seq datas. The database was ...
A PROkaryotic Chromatin ImmunoPrecipitation DataBase