NGSmethDB

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NGSmethDB

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258

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ngsmethdb

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258

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Other names: ngsmethdb

Next-generation sequencing single-cytosine-resolution DNA methylation data

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Publications:

Publications

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NGSmethDB: a database for next-generation sequencing single-cytosine-resolution DNA methylation data
PMID: 20965971

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258

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http://dx.doi.org/10.1093/nar/gkt1202

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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• NGSmethDB: a database for next-generation sequencing single-cytosine-resolution DNA methylation data PubMed citations: 31.

  31 articles citing: NGSmethDB: a database for next-generation sequencing single-cytosine-resolution DNA methylation data

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  DiseaseMeth version 3.0: a major expansion and update of the human disease methylation database. PMID:34792145

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  MethHC 2.0: information repository of DNA methylation and gene expression in human cancer. PMID:33270889

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  A Method for Identification of the Methylation Level of CpG Islands From NGS Data. PMID:32451390

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  METHCOMP: a special purpose compression platform for DNA methylation data. PMID:29528370

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  MeDReaders: a database for transcription factors that bind to methylated DNA. PMID:29145608

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  CGmapTools improves the precision of heterozygous SNV calls and supports allele-specific methylation detection and visualization in bisulfite-sequencing data. PMID:28968643

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  MethSMRT: an integrative database for DNA N6-methyladenine and N4-methylcytosine generated by single-molecular real-time sequencing. PMID:27924023

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  NGSmethDB 2017: enhanced methylomes and differential methylation. PMID:27794041

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  Establishing an analytic pipeline for genome-wide DNA methylation. PMID:27127542

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  MethylRAD: a simple and scalable method for genome-wide DNA methylation profiling using methylation-dependent restriction enzymes. PMID:26581575

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  Genome-Wide Profiling of PARP1 Reveals an Interplay with Gene Regulatory Regions and DNA Methylation. PMID:26305327

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  EpiFactors: a comprehensive database of human epigenetic factors and complexes. PMID:26153137

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  The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community. PMID:25883147

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  PD_NGSAtlas: a reference database combining next-generation sequencing epigenomic and transcriptomic data for psychiatric disorders. PMID:25551368

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  Insights into the miRNA regulations in human disease genes. PMID:25416156

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  MethHC: a database of DNA methylation and gene expression in human cancer. PMID:25398901

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  MethBank: a database integrating next-generation sequencing single-base-resolution DNA methylation programming data. PMID:25294826

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  Next-generation sequencing: from understanding biology to personalized medicine. PMID:24832667

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  DevMouse, the mouse developmental methylome database and analysis tools. PMID:24408217

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  A reference methylome database and analysis pipeline to facilitate integrative and comparative epigenomics. PMID:24324667

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  CpGislandEVO: a database and genome browser for comparative evolutionary genomics of CpG islands. PMID:24205506

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  DNA methylation is associated with an increased level of conservation at nondegenerate nucleotides in mammals. PMID:24157417

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  Combining position weight matrices and document-term matrix for efficient extraction of associations of methylated genes and diseases from free text. PMID:24147091

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  Aberrant septin 9 DNA methylation in colorectal cancer is restricted to a single CpG island. PMID:23988185

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  Position-dependent correlations between DNA methylation and the evolutionary rates of mammalian coding exons. PMID:23019368

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  CpG_MPs: identification of CpG methylation patterns of genomic regions from high-throughput bisulfite sequencing data. PMID:22941633

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  MethylomeDB: a database of DNA methylation profiles of the brain. PMID:22140101

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  DiseaseMeth: a human disease methylation database. PMID:22135302

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  Databases and bioinformatics tools for the study of DNA repair. PMID:22091405

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  Sequencing technologies and genome sequencing. PMID:21698376

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  miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments. PMID:21515631
• http://dx.doi.org/10.1093/nar/gkt1202

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nucleotide sequence databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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coding and non-coding dna

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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dna

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258

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transcription factors and regulatory sites

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258

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epigenetics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258

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sequencing

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258

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methylated dna immunoprecipitation

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258

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nucleic acid sequence coding and non-coding dna dna transcription factors and regulatory sites epigenetics sequencing methylated dna immunoprecipitation