piRBase

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piRBase

metasource: Fairsharing.org
version: None

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:26.587275

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pirbase

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:26.587275

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Other names: pirbase

piRBase stores information on piRNAs and piRNA-associated data to support piRNA functional analysis.

Webpage:

Publications:

Publications

More detailed information about this field from each metasource. ×

piRBase: a comprehensive database of piRNA sequences
PMID: 30371818

metasource: Fairsharing.org
version: None

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piRBase: integrating piRNA annotation in all aspects
PMID: 34871445

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:26.587275

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• piRBase: a comprehensive database of piRNA sequences PubMed citations: 76.

  76 articles citing: piRBase: a comprehensive database of piRNA sequences

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  Transcriptome analysis revealed gene expression feminization of testis after exogenous tetrodotoxin administration in pufferfish Takifugu flavidus. PMID:35922761

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  Polyadenylation ligation-mediated sequencing (PALM-Seq) characterizes cell-free coding and non-coding RNAs in human biofluids. PMID:35858042

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  Unraveling mitochondrial piRNAs in mouse embryonic gonadal cells. PMID:35750721

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  Integrative Analysis of Small RNA and mRNA Expression Profiles Identifies Signatures Associated With Chronic Epididymitis. PMID:35634321

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  Biofluid Specificity of Long Non-Coding RNA Profile in Hypertension: Relevance of Exosomal Fraction. PMID:35563588

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  Seminal plasma piRNA array analysis and identification of possible biomarker piRNAs for the diagnosis of asthenozoospermia. PMID:35493429

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  CRISPRs in the human genome are differentially expressed between malignant and normal adjacent to tumor tissue. PMID:35396392

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  Identification of piRNA disease associations using deep learning. PMID:35317234

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  Comparative piRNAs Profiles Give a Clue to Transgenerational Inheritance of Sex-Biased piRNAs in Cynoglossus semilaevis. PMID:35290559

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  Dysregulation of Human Somatic piRNA Expression in Parkinson's Disease Subtypes and Stages. PMID:35269612

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  piRNAs and PIWI Proteins as Diagnostic and Prognostic Markers of Genitourinary Cancers. PMID:35204687

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  HIV-1 Tat and cocaine coexposure impacts piRNAs to affect astrocyte energy metabolism. PMID:35170353

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  What Have We Learned in 30 Years of Investigations on Bari Transposons? PMID:35159391

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  Saliva RNA Biomarkers of Gastrointestinal Dysfunction in Children With Autism and Neurodevelopmental Disorders: Potential Implications for Precision Medicine. PMID:35126215

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  Exosomal and Plasma Non-Coding RNA Signature Associated with Urinary Albumin Excretion in Hypertension. PMID:35055008

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  piRNA/PIWI Protein Complex as a Potential Biomarker in Sporadic Amyotrophic Lateral Sclerosis. PMID:35015250

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  piRNAQuest V.2: an updated resource for searching through the piRNAome of multiple species. PMID:34965192

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  piRBase: integrating piRNA annotation in all aspects. PMID:34871445

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  Exosomes/microvesicles target SARS-CoV-2 via innate and RNA-induced immunity with PIWI-piRNA system. PMID:34862272

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  Advances in Non-Coding RNA Sequencing. PMID:34842804

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  PIWI interacting RNAs perspectives: a new avenues in future cancer investigations. PMID:34723746

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  Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. PMID:34718731

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  piRNA-IPdb: a PIWI-bound piRNAs database to mining NGS sncRNA data and beyond. PMID:34702185

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  A Review of Discovery Profiling of PIWI-Interacting RNAs and Their Diverse Functions in Metazoans. PMID:34681826

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  SmProt: A Reliable Repository with Comprehensive Annotation of Small Proteins Identified from Ribosome Profiling. PMID:34536568

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  PiRNA pathway in the cardiovascular system: a novel regulator of cardiac differentiation, repair and regeneration. PMID:34533602

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  Structural basis for piRNA targeting. PMID:34471284

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  Finding differentially expressed sRNA-Seq regions with srnadiff. PMID:34415926

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  Specific PIWI-Interacting RNAs and Related Small Noncoding RNAs Are Associated With Ovarian Aging in Ames Dwarf (df/df) Mice. PMID:34387333

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  piRNAclusterDB 2.0: update and expansion of the piRNA cluster database. PMID:34302483

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  Human placental piwi-interacting RNA transcriptome is characterized by expression from the DLK1-DIO3 imprinted region. PMID:34294738

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  PIWI-interacting RNAs: Mitochondria-based biogenesis and functions in cancer. PMID:34291132

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  Single-cell microRNA sequencing method comparison and application to cell lines and circulating lung tumor cells. PMID:34262050

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  Candidate l-methionine target piRNA regulatory networks analysis response to cocaine-conditioned place preference in mice. PMID:34196487

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  The biogenesis and biological function of PIWI-interacting RNA in cancer. PMID:34118972

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  Characterization of nucleic acids from extracellular vesicle-enriched human sweat. PMID:34103018

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  RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis. PMID:34082707

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  piRNAs and endo-siRNAs: Small molecules with large roles in the nervous system. PMID:34082061

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  Longitudinal stability of salivary microRNA biomarkers in children and adolescents with autism spectrum disorder. PMID:34025747

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  Emerging functions of piwi-interacting RNAs in diseases. PMID:33942984

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  Computational Methods and Online Resources for Identification of piRNA-Related Molecules. PMID:33886096

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  Small RNAs as biomarkers to differentiate benign and malign prostate diseases: An alternative for transrectal punch biopsy of the prostate? PMID:33760831

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  Critical Roles of PIWIL1 in Human Tumors: Expression, Functions, Mechanisms, and Potential Clinical Implications. PMID:33718392

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  An old weapon with a new function: PIWI-interacting RNAs in neurodegenerative diseases. PMID:33685517

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  Small Non-coding RNAs Are Dysregulated in Huntington's Disease Transgenic Mice Independently of the Therapeutic Effects of an Environmental Intervention. PMID:33675499

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  Ovulation Induction Changes Epigenetic Marks of Imprinting Genes in Mice Fetus Organs. PMID:33650826

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  Systematic evaluation of the effects of genetic variants on PIWI-interacting RNA expression across 33 cancer types. PMID:33330918

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  CoolMPS: evaluation of antibody labeling based massively parallel non-coding RNA sequencing. PMID:33290507

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  Glial granules contain germline proteins in the Drosophila brain, which regulate brain transcriptome. PMID:33219296

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  Innate and Adaptive Immunity of Murine Neural Stem Cell-Derived piRNA Exosomes/Microvesicles against Pseudotyped SARS-CoV-2 and HIV-Based Lentivirus. PMID:33205008

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  FishDB: an integrated functional genomics database for fishes. PMID:33203359

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  Aging Induces Profound Changes in sncRNA in Rat Sperm and These Changes Are Modified by Perinatal Exposure to Environmental Flame Retardant. PMID:33158036

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  Global Analyses of Expressed Piwi-Interacting RNAs in Gastric Cancer. PMID:33081152

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  Repeated sampling facilitates within- and between-subject modeling of the human sperm transcriptome to identify dynamic and stress-responsive sncRNAs. PMID:33060642

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  Systematics for types and effects of RNA variations. PMID:32951567

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  Non-Coding RNA Databases in Cardiovascular Research. PMID:32887511

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  MNDR v3.0: mammal ncRNA-disease repository with increased coverage and annotation. PMID:32833025

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  Computational Identification of piRNAs Using Features Based on RNA Sequence, Structure, Thermodynamic and Physicochemical Properties. PMID:32655289

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  mmannot: How to improve small-RNA annotation? PMID:32463818

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  Clues of in vivo nuclear gene regulation by mitochondrial short non-coding RNAs. PMID:32427953

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  Diversification of piRNAs expressed in PGCs and somatic cells during embryonic gonadal development. PMID:32375541

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  PIWI-interacting RNAs are differentially expressed during cardiac differentiation of human pluripotent stem cells. PMID:32369512

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  piRNA-63076 contributes to pulmonary arterial smooth muscle cell proliferation through acyl-CoA dehydrogenase. PMID:32227582

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  Promoter hypermethylation of PIWI/piRNA pathway genes associated with diminished pachytene piRNA production in bovine hybrid male sterility. PMID:32141383

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  Cytosine methylation of mature microRNAs inhibits their functions and is associated with poor prognosis in glioblastoma multiforme. PMID:32098627

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  Differential Regulation of circRNA, miRNA, and piRNA during Early Osteogenic and Chondrogenic Differentiation of Human Mesenchymal Stromal Cells. PMID:32050423

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  Small RNA Profiling of piRNAs in Colorectal Cancer Identifies Consistent Overexpression of piR-24000 That Correlates Clinically with an Aggressive Disease Phenotype. PMID:31940941

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  Small noncoding RNA discovery and profiling with sRNAtools based on high-throughput sequencing. PMID:31885040

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  Comparison of the transcriptomes of two tardigrades with different hatching coordination. PMID:31864287

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  PIWI Proteins and piRNAs in the Nervous System. PMID:31838836

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  Database Resources of the National Genomics Data Center in 2020. PMID:31702008

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  Deep Small RNA Sequencing of BRAF V600E Mutated Papillary Thyroid Carcinoma With Lymph Node Metastasis. PMID:31649724

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  Organ-specific small non-coding RNA responses in domestic (Sudani) ducks experimentally infected with highly pathogenic avian influenza virus (H5N1). PMID:31538530

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  Short RNA regulators: the past, the present, the future, and implications for precision medicine and health disparities. PMID:31323485

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  The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection. PMID:30626175

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  Piwi-interacting RNAs (piRNAs) and cancer: Emerging biological concepts and potential clinical implications. PMID:30599187
• piRBase: integrating piRNA annotation in all aspects PubMed citations: 1.

  1 articles citing: piRBase: integrating piRNA annotation in all aspects

  ×

  HIV-1 Tat and cocaine coexposure impacts piRNAs to affect astrocyte energy metabolism. PMID:35170353

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Tags

More detailed information about this field from each metasource. ×

function analysis

metasource: Fairsharing.org
version: None

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non-coding rna

metasource: Fairsharing.org
version: None

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functional, regulatory and non-coding rna

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:26.587275

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rna splicing

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:26.587275

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epigenetics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:26.587275

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gene transcripts

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:26.587275

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sequencing

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:26.587275

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function analysis non-coding rna functional, regulatory and non-coding rna rna splicing epigenetics gene transcripts sequencing