GBshape
DNA shape analysis has been established in recent years as an approach that reveals protein-DNA binding specificity determinants beyond nucleotide sequence.GBshape provides DNA shape annotations of entire genomes.The database currently contains annotations for minor groove width (MGW), propeller twist (ProT), Roll, helix twist (HelT),and hydroxyl radical cleavage (ORChID2) for 94 organisms.Additional genomes can easily be added in the provided framework.GBshape contains two major tools, a Genome Browser anda Table Browser.The Genome Browser provides a graphical representation of DNA shape annotations along standard genome browser annotations (Figure).The Table Browser enables the data manipulation, downloads, and basic statistical analyses.The DNA shape annotations were derived with a high-throughput method for DNA shape predictions (DNAshape) andconstitute the whole-genome complement to a motif database of transcription factor binding sites (TFBSshape).
Description
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DNA shape analysis has been established in recent years as an approach that reveals protein-DNA binding specificity determinants beyond nucleotide sequence.GBshape provides DNA shape annotations of entire genomes.The database currently contains annotations for minor groove width (MGW), propeller twist (ProT), Roll, helix twist (HelT),and hydroxyl radical cleavage (ORChID2) for 94 organisms.Additional genomes can easily be added in the provided framework.GBshape contains two major tools, a Genome Browser anda Table Browser.The Genome Browser provides a graphical representation of DNA shape annotations along standard genome browser annotations (Figure).The Table Browser enables the data manipulation, downloads, and basic statistical analyses.The DNA shape annotations were derived with a high-throughput method for DNA shape predictions (DNAshape) andconstitute the whole-genome complement to a motif database of transcription factor binding sites (TFBSshape).
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://rohsdb.cmb.usc.edu/GBshape/Webpage
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http://rohsdb.cmb.usc.edu/GBshape/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
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http://dx.doi.org/10.1093/nar/gku977
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
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http://dx.doi.org/10.1093/nar/gku977
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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nucleotide sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
coding and non-coding dna
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
nucleotide sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
coding and non-coding dna
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
nucleic acid sequence coding and non-coding dna
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