SilkDB 3.0
Names
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SilkDB 3.0
metasource: re3data.org
version: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:04.678328
SilkWorm
metasource: re3data.org
version: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
Silkworm Genome Database
metasource: re3data.org
version: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
SilkDB_3.0
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:04.678328
Names
More detailed information about this field from each metasource.
SilkDB 3.0
metasource: re3data.orgversion: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:04.678328
SilkWorm
metasource: re3data.orgversion: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
Silkworm Genome Database
metasource: re3data.orgversion: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
SilkDB_3.0
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:04.678328
Other names: SilkWorm, Silkworm Genome Database, SilkDB_3.0
Names
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SilkDB 3.0
metasource: re3data.orgversion: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:04.678328
SilkWorm
metasource: re3data.orgversion: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
Silkworm Genome Database
metasource: re3data.orgversion: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
SilkDB_3.0
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:04.678328
SilkDB is a database of the integrated genome resource for the silkworm, Bombyx mori. This database provides access to not only genomic data including functional annotation of genes, gene products and chromosomal mapping, but also extensive biological information such as microarray expression data, ESTs and corresponding references. SilkDB will be useful for the silkworm research community as well as comparative genomics
Description
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SilkDB is a database of the integrated genome resource for the silkworm, Bombyx mori. This database provides access to not only genomic data including functional annotation of genes, gene products and chromosomal mapping, but also extensive biological information such as microarray expression data, ESTs and corresponding references. SilkDB will be useful for the silkworm research community as well as comparative genomics
metasource: re3data.orgversion: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
SilkDB is an open-accessibility database and powerful platform that provides comprehensive information on the silkworm (Bombyx mori) genome. Since SilkDB 2.0 was released 10 years ago, vast quantities of data about multiple aspects of the silkworm have been generated, including genome, transcriptome, Hi-C and pangenome. To visualize data at these different biological levels, we present SilkDB 3.0 (https: silkdb.bioinfotoolkits.net), a visual analytic tool for exploring silkworm data through an interactive user interface.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:04.678328
Webpage:
https://silkdb.bioinfotoolkits.net/Webpage
More detailed information about this field from each metasource.
https://silkdb.bioinfotoolkits.net/
metasource: re3data.orgversion: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
https://silkdb.bioinfotoolkits.net
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:04.678328
Licence:
Name: CopyrightsLicence name
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Copyrights
metasource: re3data.orgversion: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
Licence URL
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https://academic.oup.com/nar/article/48/D1/D749/5603220
metasource: re3data.orgversion: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
Publications:
Publications
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SilkDB 3.0: visualizing and exploring multiple levels of data for silkworm
PMID: 31642484
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:04.678328
Publications
More detailed information about this field from each metasource.
SilkDB 3.0: visualizing and exploring multiple levels of data for silkworm
PMID: 31642484
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:04.678328
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SilkDB 3.0: visualizing and exploring multiple levels of data for silkworm
PubMed citations: 16.
16 articles citing: SilkDB 3.0: visualizing and exploring multiple levels of data for silkworm
BmPMFBP1 regulates the development of eupyrene sperm in the silkworm, Bombyx mori. PMID:35312700
Hemocyte Clusters Defined by scRNA-Seq in Bombyx mori: In Silico Analysis of Predicted Marker Genes and Implications for Potential Functional Roles. PMID:35281044
The Role of Filippi's Glands in the Silk Moths Cocoon Construction. PMID:34948319
Genetic Code Expansion System for Tight Control of Gene Expression in Bombyx mori Cell Lines. PMID:34940169
InsectBase 2.0: a comprehensive gene resource for insects. PMID:34792158
Heat Shock Protein 70 Family in Response to Multiple Abiotic Stresses in the Silkworm. PMID:34680697
High-Quality de novo Chromosome-Level Genome Assembly of a Single Bombyx mori With BmNPV Resistance by a Combination of PacBio Long-Read Sequencing, Illumina Short-Read Sequencing, and Hi-C Sequencing. PMID:34603381
Proteomic Identification of Bombyx mori Organelles Using the Engineered Ascorbate Peroxidase APEX and Development of Silkworm Organelle Proteome Database (SilkOrganPDB). PMID:34068790
Identification of Silkworm Hemocyte Subsets and Analysis of Their Response to Baculovirus Infection Based on Single-Cell RNA Sequencing. PMID:33995363
Evolution of the codling moth pheromone via an ancient gene duplication. PMID:33892710
Proteotranscriptomics assisted gene annotation and spatial proteomics of Bombyx mori BmN4 cell line. PMID:33023468
Semaphorin-1a-like gene plays an important role in the embryonic development of silkworm, Bombyx mori. PMID:33007004
Tip60 Phosphorylation at Ser 99 Is Essential for Autophagy Induction in Bombyx mori. PMID:32962211
BrassicaEDB: A Gene Expression Database for Brassica Crops. PMID:32823802
Adenosine Receptor Modulates Permissiveness of Baculovirus (Budded Virus) Infection via Regulation of Energy Metabolism in Bombyx mori. PMID:32411148
The 27th annual Nucleic Acids Research database issue and molecular biology database collection. PMID:31906604
Tags:
Tags
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bioinformatics
metasource: re3data.org
version: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
expression data
metasource: re3data.org
version: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
functional annotation mapping
metasource: re3data.org
version: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
functional chromosome mapping
metasource: re3data.org
version: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
genes
metasource: re3data.org
version: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
genomics
metasource: re3data.org
version: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
sequences
metasource: re3data.org
version: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
mapping
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:04.678328
transcriptomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:04.678328
dna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:04.678328
gene and protein families
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:04.678328
gene regulation
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:04.678328
Tags
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bioinformatics
metasource: re3data.orgversion: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
expression data
metasource: re3data.orgversion: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
functional annotation mapping
metasource: re3data.orgversion: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
functional chromosome mapping
metasource: re3data.orgversion: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
genes
metasource: re3data.orgversion: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
genomics
metasource: re3data.orgversion: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
sequences
metasource: re3data.orgversion: re3data.org: SilkDB 3.0; editing status 2021-09-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3435Z last accessed: 2022-11-04
mapping
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:04.678328
transcriptomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:04.678328
dna
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:04.678328
gene and protein families
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:04.678328
gene regulation
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:04.678328
bioinformatics expression data functional annotation mapping functional chromosome mapping gene genomics sequences mapping transcriptomics dna gene and protein families gene regulation
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