Minimotif Miner 3.0
Names
More detailed information about this field from each metasource.
Minimotif Miner 3.0
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
MnM
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Names
More detailed information about this field from each metasource.
Minimotif Miner 3.0
metasource: Fairsharing.orgversion: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
MnM
metasource: Fairsharing.orgversion: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Names
More detailed information about this field from each metasource.
Minimotif Miner 3.0
metasource: Fairsharing.orgversion: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
MnM
metasource: Fairsharing.orgversion: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
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A database of short functional motifs involved in posttranslational modifications, binding to other proteins, nucleic acids, or small molecules.
Description
More detailed information about this field from each metasource.
A database of short functional motifs involved in posttranslational modifications, binding to other proteins, nucleic acids, or small molecules.
metasource: Fairsharing.orgversion: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Webpage:
http://minimotifminer.orgWebpage
More detailed information about this field from each metasource.
http://minimotifminer.org
metasource: Fairsharing.orgversion: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Licence:
Name: MIRTAR is free for academic and non-profit useLicence name
More detailed information about this field from each metasource.
MIRTAR is free for academic and non-profit use
metasource: Fairsharing.orgversion: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Licence URL
More detailed information about this field from each metasource.
http://mirtarbase.mbc.nctu.edu.tw/cache/download/LICENSE
metasource: Fairsharing.orgversion: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications:
(9)
Publications
More detailed information about this field from each metasource.
Minimotif Miner: a tool for investigating protein function
PMID: 16489333
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Minimotif miner 2nd release: a database and web system for motif search
PMID: 18978024
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Viral infection and human disease--insights from minimotifs
PMID: 18508672
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences
PMID: 22146221
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
A proposed syntax for Minimotif Semantics, version 1
PMID: 19656396
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
A computational tool for identifying minimotifs in protein-protein interactions and improving the accuracy of minimotif predictions
PMID: 20938975
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
High-performance exact algorithms for motif search
PMID: 16328946
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Partitioning of minimotifs based on function with improved prediction accuracy
PMID: 20808856
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Minimotif miner: a computational tool to investigate protein function, disease, and genetic diversity
PMID: 18429315
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications
More detailed information about this field from each metasource.
Minimotif Miner: a tool for investigating protein function
PMID: 16489333
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Minimotif miner 2nd release: a database and web system for motif search
PMID: 18978024
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Viral infection and human disease--insights from minimotifs
PMID: 18508672
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences
PMID: 22146221
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
A proposed syntax for Minimotif Semantics, version 1
PMID: 19656396
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
A computational tool for identifying minimotifs in protein-protein interactions and improving the accuracy of minimotif predictions
PMID: 20938975
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
High-performance exact algorithms for motif search
PMID: 16328946
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Partitioning of minimotifs based on function with improved prediction accuracy
PMID: 20808856
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Minimotif miner: a computational tool to investigate protein function, disease, and genetic diversity
PMID: 18429315
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
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Minimotif Miner: a tool for investigating protein function
PubMed citations: 60.
60 articles citing: Minimotif Miner: a tool for investigating protein function
Splicing-accessible coding 3'UTRs control protein stability and interaction networks. PMID:32727563
The carboxy-terminus, a key regulator of protein function. PMID:31106589
Dishevelled enables casein kinase 1-mediated phosphorylation of Frizzled 6 required for cell membrane localization. PMID:30309985
Minimotifs dysfunction is pervasive in neurodegenerative disorders. PMID:30225339
Minimotif Miner 4: a million peptide minimotifs and counting. PMID:29140456
The minimotif synthesis hypothesis for the origin of life. PMID:28083146
The Functional Human C-Terminome. PMID:27050421
The EFF-1A Cytoplasmic Domain Influences Hypodermal Cell Fusions in C. elegans But Is Not Dependent on 14-3-3 Proteins. PMID:26800457
Synthetic Protein Scaffolds Based on Peptide Motifs and Cognate Adaptor Domains for Improving Metabolic Productivity. PMID:26636078
Redefining the BH3 Death Domain as a 'Short Linear Motif'. PMID:26541461
Natural variability of minimotifs in 1092 people indicates that minimotifs are targets of evolution. PMID:26068475
Cadherin juxtamembrane region derived peptides inhibit TGFβ1 induced gene expression. PMID:25108297
The Geogenomic Mutational Atlas of Pathogens (GoMAP) web system. PMID:24675726
Discriminative motif discovery via simulated evolution and random under-sampling. PMID:24551063
SeqNLS: nuclear localization signal prediction based on frequent pattern mining and linear motif scoring. PMID:24204689
LASAGNA: a novel algorithm for transcription factor binding site alignment. PMID:23522376
Regulation of presynaptic anchoring of the scaffold protein Bassoon by phosphorylation-dependent interaction with 14-3-3 adaptor proteins. PMID:23516560
Searching for transcription factor binding sites in vector spaces. PMID:23244338
Secondary structure, a missing component of sequence-based minimotif definitions. PMID:23236358
Achieving high accuracy prediction of minimotifs. PMID:23029121
Protein disorder and short conserved motifs in disordered regions are enriched near the cytoplasmic side of single-pass transmembrane proteins. PMID:22962613
MLN64 transport to the late endosome is regulated by binding to 14-3-3 via a non-canonical binding site. PMID:22514632
Reducing false-positive prediction of minimotifs with a genetic interaction filter. PMID:22403687
Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences. PMID:22146221
Exploiting publicly available biological and biochemical information for the discovery of novel short linear motifs. PMID:21799808
Discovery of protein phosphorylation motifs through exploratory data analysis. PMID:21647451
HIVToolbox, an integrated web application for investigating HIV. PMID:21647445
C terminus of the P2X7 receptor: treasure hunting. PMID:21484094
Uncovering a role for the tail of the Dictyostelium discoideum SadA protein in cell-substrate adhesion. PMID:21441344
Genome-wide evolutionary conservation of N-glycosylation sites. PMID:21355035
Discriminative motif finding for predicting protein subcellular localization. PMID:21233524
Large-scale discovery and characterization of protein regulatory motifs in eukaryotes. PMID:21206902
RITA, a novel modulator of Notch signalling, acts via nuclear export of RBP-J. PMID:21102556
A computational tool for identifying minimotifs in protein-protein interactions and improving the accuracy of minimotif predictions. PMID:20938975
α-Synuclein binds the K(ATP) channel at insulin-secretory granules and inhibits insulin secretion. PMID:20858756
Partitioning of minimotifs based on function with improved prediction accuracy. PMID:20808856
MimoSA: a system for minimotif annotation. PMID:20565705
SPA: Short peptide analyzer of intrinsic disorder status of short peptides. PMID:20497238
Estimation and efficient computation of the true probability of recurrence of short linear protein sequence motifs in unrelated proteins. PMID:20055997
Consortin, a trans-Golgi network cargo receptor for the plasma membrane targeting and recycling of connexins. PMID:19864490
A structure filter for the Eukaryotic Linear Motif Resource. PMID:19852836
A proposed syntax for Minimotif Semantics, version 1. PMID:19656396
Evidence for the concerted evolution between short linear protein motifs and their flanking regions. PMID:19584925
Structural conservation of a short, functional, peptide-sequence motif. PMID:19273121
MinK-dependent internalization of the IKs potassium channel. PMID:19202166
mRuby, a bright monomeric red fluorescent protein for labeling of subcellular structures. PMID:19194514
Discovery of phosphorylation motif mixtures in phosphoproteomics data. PMID:18996944
Minimotif miner 2nd release: a database and web system for motif search. PMID:18978024
Cohesin subunit SMC1 associates with mitotic microtubules at the spindle pole. PMID:18832153
The conservation pattern of short linear motifs is highly correlated with the function of interacting protein domains. PMID:18828911
Viral infection and human disease--insights from minimotifs. PMID:18508672
A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences. PMID:18460207
A new protein linear motif benchmark for multiple sequence alignment software. PMID:18439277
Genome-wide inference of protein interaction sites: lessons from the yeast high-quality negative protein-protein interaction dataset. PMID:18281313
AutoMotif Server for prediction of phosphorylation sites in proteins using support vector machine: 2007 update. PMID:17994256
Quantitative time-resolved phosphoproteomic analysis of mast cell signaling. PMID:17947660
Developmental expression and differentiation-related neuron-specific splicing of metastasis suppressor 1 (Mtss1) in normal and transformed cerebellar cells. PMID:17925019
SLiMFinder: a probabilistic method for identifying over-represented, convergently evolved, short linear motifs in proteins. PMID:17912346
The SLiMDisc server: short, linear motif discovery in proteins. PMID:17576682
Dusty protein kinases: primary structure, gene evolution, tissue specific expression and unique features of the catalytic domain. PMID:17123648 -
Minimotif miner 2nd release: a database and web system for motif search
PubMed citations: 34.
34 articles citing: Minimotif miner 2nd release: a database and web system for motif search
In Silico, Molecular Docking and In Vitro Antimicrobial Activity of the Major Rapeseed Seed Storage Proteins. PMID:33013372
The carboxy-terminus, a key regulator of protein function. PMID:31106589
Minimotifs dysfunction is pervasive in neurodegenerative disorders. PMID:30225339
Minimotif Miner 4: a million peptide minimotifs and counting. PMID:29140456
The minimotif synthesis hypothesis for the origin of life. PMID:28083146
The Functional Human C-Terminome. PMID:27050421
The EFF-1A Cytoplasmic Domain Influences Hypodermal Cell Fusions in C. elegans But Is Not Dependent on 14-3-3 Proteins. PMID:26800457
Experimental detection of short regulatory motifs in eukaryotic proteins: tips for good practice as well as for bad. PMID:26581338
Natural variability of minimotifs in 1092 people indicates that minimotifs are targets of evolution. PMID:26068475
Prediction and experimental characterization of nsSNPs altering human PDZ-binding motifs. PMID:24722214
Secondary structure, a missing component of sequence-based minimotif definitions. PMID:23236358
Achieving high accuracy prediction of minimotifs. PMID:23029121
iELM--a web server to explore short linear motif-mediated interactions. PMID:22638578
Profile-based short linear protein motif discovery. PMID:22607209
PepSite: prediction of peptide-binding sites from protein surfaces. PMID:22600738
Reducing false-positive prediction of minimotifs with a genetic interaction filter. PMID:22403687
A protein short motif search tool using amino acid sequence and their secondary structure assignment. PMID:22355226
Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences. PMID:22146221
ELM--the database of eukaryotic linear motifs. PMID:22110040
The molecular basis of the Caskin1 and Mint1 interaction with CASK. PMID:21763699
HIVToolbox, an integrated web application for investigating HIV. PMID:21647445
SLiMSearch 2.0: biological context for short linear motifs in proteins. PMID:21622654
Non-Alignment Features Based Enzyme/Non-Enzyme Classification Using an Ensemble Method. PMID:21572553
C terminus of the P2X7 receptor: treasure hunting. PMID:21484094
Uncovering a role for the tail of the Dictyostelium discoideum SadA protein in cell-substrate adhesion. PMID:21441344
A computational tool for identifying minimotifs in protein-protein interactions and improving the accuracy of minimotif predictions. PMID:20938975
Toward a complete in silico, multi-layered embryonic stem cell regulatory network. PMID:20890967
Partitioning of minimotifs based on function with improved prediction accuracy. PMID:20808856
MimoSA: a system for minimotif annotation. PMID:20565705
SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs. PMID:20497999
ELM: the status of the 2010 eukaryotic linear motif resource. PMID:19920119
A structure filter for the Eukaryotic Linear Motif Resource. PMID:19852836
A proposed syntax for Minimotif Semantics, version 1. PMID:19656396
seeMotif: exploring and visualizing sequence motifs in 3D structures. PMID:19477961 -
Viral infection and human disease--insights from minimotifs
PubMed citations: 31.
31 articles citing: Viral infection and human disease--insights from minimotifs
Minimotifs dysfunction is pervasive in neurodegenerative disorders. PMID:30225339
Minimotif Miner 4: a million peptide minimotifs and counting. PMID:29140456
Is unphosphorylated Rex, as multifunctional protein of HTLV-1, a fully intrinsically disordered protein? An in silico study. PMID:28955936
SH3 domains: modules of protein-protein interactions. PMID:28510178
Prediction of virus-host protein-protein interactions mediated by short linear motifs. PMID:28279163
Prediction of GCRV virus-host protein interactome based on structural motif-domain interactions. PMID:28253857
A Review of Functional Motifs Utilized by Viruses. PMID:28248213
A bioinformatics pipeline to search functional motifs within whole-proteome data: a case study of poxviruses. PMID:28000080
The Functional Human C-Terminome. PMID:27050421
Natural variability of minimotifs in 1092 people indicates that minimotifs are targets of evolution. PMID:26068475
Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer? PMID:25057855
Structural basis of HIV-1 Vpu-mediated BST2 antagonism via hijacking of the clathrin adaptor protein complex 1. PMID:24843023
Potential of known and short prokaryotic protein motifs as a basis for novel peptide-based antibacterial therapeutics: a computational survey. PMID:24478765
The eukaryotic linear motif resource ELM: 10 years and counting. PMID:24214962
Exploring the binding diversity of intrinsically disordered proteins involved in one-to-many binding. PMID:23233352
Achieving high accuracy prediction of minimotifs. PMID:23029121
SLiMPrints: conservation-based discovery of functional motif fingerprints in intrinsically disordered protein regions. PMID:22977176
HTLV-1 Rex: the courier of viral messages making use of the host vehicle. PMID:22973269
A comparative study of short linear motif compositions of the influenza A virus ribonucleoproteins. PMID:22715401
iELM--a web server to explore short linear motif-mediated interactions. PMID:22638578
PepSite: prediction of peptide-binding sites from protein surfaces. PMID:22600738
Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences. PMID:22146221
ELM--the database of eukaryotic linear motifs. PMID:22110040
HIV protein sequence hotspots for crosstalk with host hub proteins. PMID:21858059
Norovirus RNA-dependent RNA polymerase is phosphorylated by an important survival kinase, Akt. PMID:21849454
Sequence- and interactome-based prediction of viral protein hotspots targeting host proteins: a case study for HIV Nef. PMID:21738584
SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs. PMID:20497999
ELM: the status of the 2010 eukaryotic linear motif resource. PMID:19920119
Host sequence motifs shared by HIV predict response to antiretroviral therapy. PMID:19627600
Prediction of HIV-1 virus-host protein interactions using virus and host sequence motifs. PMID:19450270
Minimotif miner 2nd release: a database and web system for motif search. PMID:18978024 -
Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences
PubMed citations: 29.
29 articles citing: Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences
Pathogen Moonlighting Proteins: From Ancestral Key Metabolic Enzymes to Virulence Factors. PMID:34203698
Cytomegalovirus protein m154 perturbs the adaptor protein-1 compartment mediating broad-spectrum immune evasion. PMID:31928630
The carboxy-terminus, a key regulator of protein function. PMID:31106589
The predictive performance of short-linear motif features in the prediction of calmodulin-binding proteins. PMID:30453876
SLiM-Enrich: computational assessment of protein-protein interaction data as a source of domain-motif interactions. PMID:30402352
Minimotifs dysfunction is pervasive in neurodegenerative disorders. PMID:30225339
Human Cytomegalovirus UL135 Interacts with Host Adaptor Proteins To Regulate Epidermal Growth Factor Receptor and Reactivation from Latency. PMID:30089695
LMDIPred: A web-server for prediction of linear peptide sequences binding to SH3, WW and PDZ domains. PMID:30001346
A Prominent Role of the Human Cytomegalovirus UL8 Glycoprotein in Restraining Proinflammatory Cytokine Production by Myeloid Cells at Late Times during Infection. PMID:29467314
Novel linear motif filtering protocol reveals the role of the LC8 dynein light chain in the Hippo pathway. PMID:29240760
Minimotif Miner 4: a million peptide minimotifs and counting. PMID:29140456
SLiMSearch: a framework for proteome-wide discovery and annotation of functional modules in intrinsically disordered regions. PMID:28387819
Shetti, a simple tool to parse, manipulate and search large datasets of sequences. PMID:28348820
The minimotif synthesis hypothesis for the origin of life. PMID:28083146
A bioinformatics pipeline to search functional motifs within whole-proteome data: a case study of poxviruses. PMID:28000080
The Functional Human C-Terminome. PMID:27050421
Conserved Functional Motifs and Homology Modeling to Predict Hidden Moonlighting Functional Sites. PMID:26106597
Natural variability of minimotifs in 1092 people indicates that minimotifs are targets of evolution. PMID:26068475
LMPID: a manually curated database of linear motifs mediating protein-protein interactions. PMID:25776024
Fast and accurate discovery of degenerate linear motifs in protein sequences. PMID:25207816
Classification of intrinsically disordered regions and proteins. PMID:24773235
What's that gene (or protein)? Online resources for exploring functions of genes, transcripts, and proteins. PMID:24723265
DoReMi: context-based prioritization of linear motif matches. PMID:24711967
Predicting binding within disordered protein regions to structurally characterised peptide-binding domains. PMID:24019881
Efficient algorithms for biological stems search. PMID:23679045
Secondary structure, a missing component of sequence-based minimotif definitions. PMID:23236358
Exploring the binding diversity of intrinsically disordered proteins involved in one-to-many binding. PMID:23233352
SLiMPrints: conservation-based discovery of functional motif fingerprints in intrinsically disordered protein regions. PMID:22977176
The identification of short linear motif-mediated interfaces within the human interactome. PMID:22328783 -
A proposed syntax for Minimotif Semantics, version 1
PubMed citations: 13.
13 articles citing: A proposed syntax for Minimotif Semantics, version 1
The carboxy-terminus, a key regulator of protein function. PMID:31106589
Minimotif Miner 4: a million peptide minimotifs and counting. PMID:29140456
The minimotif synthesis hypothesis for the origin of life. PMID:28083146
The Functional Human C-Terminome. PMID:27050421
Natural variability of minimotifs in 1092 people indicates that minimotifs are targets of evolution. PMID:26068475
Secondary structure, a missing component of sequence-based minimotif definitions. PMID:23236358
Achieving high accuracy prediction of minimotifs. PMID:23029121
Reducing false-positive prediction of minimotifs with a genetic interaction filter. PMID:22403687
Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences. PMID:22146221
Extremely variable conservation of γ-type small, acid-soluble proteins from spores of some species in the bacterial order Bacillales. PMID:21317325
A computational tool for identifying minimotifs in protein-protein interactions and improving the accuracy of minimotif predictions. PMID:20938975
Partitioning of minimotifs based on function with improved prediction accuracy. PMID:20808856
MimoSA: a system for minimotif annotation. PMID:20565705 -
A computational tool for identifying minimotifs in protein-protein interactions and improving the accuracy of minimotif predictions
PubMed citations: 8.
8 articles citing: A computational tool for identifying minimotifs in protein-protein interactions and improving the accuracy of minimotif predictions
Minimotif Miner 4: a million peptide minimotifs and counting. PMID:29140456
Classification of intrinsically disordered regions and proteins. PMID:24773235
Computational prediction of the human-microbial oral interactome. PMID:24576332
Secondary structure, a missing component of sequence-based minimotif definitions. PMID:23236358
Achieving high accuracy prediction of minimotifs. PMID:23029121
Reducing false-positive prediction of minimotifs with a genetic interaction filter. PMID:22403687
Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences. PMID:22146221
Disordered patterns in clustered Protein Data Bank and in eukaryotic and bacterial proteomes. PMID:22073276 -
High-performance exact algorithms for motif search
PubMed citations: 7.
7 articles citing: High-performance exact algorithms for motif search
Efficient sequential and parallel algorithms for finding edit distance based motifs. PMID:27557423
ExactSearch: a web-based plant motif search tool. PMID:27134638
Endocytosis and Trafficking of Natriuretic Peptide Receptor-A: Potential Role of Short Sequence Motifs. PMID:26151885
PairMotif+: a fast and effective algorithm for de novo motif discovery in DNA sequences. PMID:23678291
SlideSort: all pairs similarity search for short reads. PMID:21148542
Small peptide recognition sequence for intracellular sorting. PMID:20817434
Functional roles of short sequence motifs in the endocytosis of membrane receptors. PMID:19482617 -
Partitioning of minimotifs based on function with improved prediction accuracy
PubMed citations: 6.
6 articles citing: Partitioning of minimotifs based on function with improved prediction accuracy
Minimotif Miner 4: a million peptide minimotifs and counting. PMID:29140456
The Functional Human C-Terminome. PMID:27050421
Secondary structure, a missing component of sequence-based minimotif definitions. PMID:23236358
Achieving high accuracy prediction of minimotifs. PMID:23029121
Reducing false-positive prediction of minimotifs with a genetic interaction filter. PMID:22403687
Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences. PMID:22146221 -
Minimotif miner: a computational tool to investigate protein function, disease, and genetic diversity
PubMed citations: 4.
4 articles citing: Minimotif miner: a computational tool to investigate protein function, disease, and genetic diversity
The EFF-1A Cytoplasmic Domain Influences Hypodermal Cell Fusions in C. elegans But Is Not Dependent on 14-3-3 Proteins. PMID:26800457
Classification of intrinsically disordered regions and proteins. PMID:24773235
C terminus of the P2X7 receptor: treasure hunting. PMID:21484094
Skin stem cells orchestrate directional migration by regulating microtubule-ACF7 connections through GSK3β. PMID:21295697
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More detailed information about this field from each metasource.
post-translation modification site prediction
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein interaction
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein modification
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
region
metasource: Fairsharing.org
version: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Tags
More detailed information about this field from each metasource.
post-translation modification site prediction
metasource: Fairsharing.orgversion: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein modification
metasource: Fairsharing.orgversion: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
region
metasource: Fairsharing.orgversion: FAIRsharing.org: MnM; Minimotif Miner 3.0; DOI: https://doi.org/10.25504/FAIRsharing.cjk54e; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
post-translation modification site prediction protein protein interaction protein modification region
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