GeneSigDB: a manually curated database and resource for analysis of gene expression signatures
Gene Signature DataBase (GeneSigDB) is a database of gene signatures (or gene sets) that have been extracted and manually curated from articles that are indexed by PubMed.
Description
More detailed information about this field from each metasource.
Gene Signature DataBase (GeneSigDB) is a database of gene signatures (or gene sets) that have been extracted and manually curated from articles that are indexed by PubMed.
metasource: Fairsharing.orgversion: FAIRsharing.org: GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; DOI: https://doi.org/10.25504/FAIRsharing.1ety1h; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Webpage:
http://www.genesigdb.orgWebpage
More detailed information about this field from each metasource.
http://www.genesigdb.org
metasource: Fairsharing.orgversion: FAIRsharing.org: GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; DOI: https://doi.org/10.25504/FAIRsharing.1ety1h; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
GeneSigDB--a curated database of gene expression signatures
PMID: 19934259
metasource: Fairsharing.org
version: FAIRsharing.org: GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; DOI: https://doi.org/10.25504/FAIRsharing.1ety1h; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications
More detailed information about this field from each metasource.
GeneSigDB--a curated database of gene expression signatures
PMID: 19934259
metasource: Fairsharing.org
version: FAIRsharing.org: GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; DOI: https://doi.org/10.25504/FAIRsharing.1ety1h; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
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GeneSigDB--a curated database of gene expression signatures
PubMed citations: 62.
62 articles citing: GeneSigDB--a curated database of gene expression signatures
Application of weighted gene co-expression network analysis to identify the hub genes in H1N1. PMID:34336131
HGNChelper: identification and correction of invalid gene symbols for human and mouse. PMID:33564398
A review of computational drug repositioning: strategies, approaches, opportunities, challenges, and directions. PMID:33431024
A dichotomy of gene regulatory associations during the activated B-cell to plasmablast transition. PMID:32843533
netNMF-sc: leveraging gene-gene interactions for imputation and dimensionality reduction in single-cell expression analysis. PMID:31992614
A Novel Discovery: Holistic Efficacy at the Special Organ Level of Pungent Flavored Compounds from Pungent Traditional Chinese Medicine. PMID:30754631
Module Analysis Captures Pancancer Genetically and Epigenetically Deregulated Cancer Driver Genes for Smoking and Antiviral Response. PMID:29331675
Drug repurposing for the treatment of glioblastoma multiforme. PMID:29179732
Non-Small Cell Lung Cancer Radiogenomics Map Identifies Relationships between Molecular and Imaging Phenotypes with Prognostic Implications. PMID:28727543
The CINSARC signature as a prognostic marker for clinical outcome in multiple neoplasms. PMID:28710396
annoPeak: a web application to annotate and visualize peaks from ChIP-seq/ChIP-exo-seq. PMID:28169395
The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins. PMID:27374120
Network Analysis Identifies Proinflammatory Plasma Cell Polarization for Secretion of ISG15 in Human Autoimmunity. PMID:27357150
Finding New Order in Biological Functions from the Network Structure of Gene Annotations. PMID:26588252
Gene expression meta-analysis reveals immune response convergence on the IFNγ-STAT1-IRF1 axis and adaptive immune resistance mechanisms in lymphoma. PMID:26362649
Inhibition of Thrombopoietin/Mpl Signaling in Adult Hematopoiesis Identifies New Candidates for Hematopoietic Stem Cell Maintenance. PMID:26147434
DSigDB: drug signatures database for gene set analysis. PMID:25990557
Pancancer analysis of DNA methylation-driven genes using MethylMix. PMID:25631659
Transcriptional coexpression network reveals the involvement of varying stem cell features with different dysregulations in different gastric cancer subtypes. PMID:24917244
Pathway and network analysis in proteomics. PMID:24911777
SPIB and BATF provide alternate determinants of IRF4 occupancy in diffuse large B-cell lymphoma linked to disease heterogeneity. PMID:24875472
Annotation enrichment analysis: an alternative method for evaluating the functional properties of gene sets. PMID:24569707
Identification of ovarian cancer driver genes by using module network integration of multi-omics data. PMID:24511378
Polymorphic cytochrome P450 enzymes (CYPs) and their role in personalized therapy. PMID:24340040
Reverse causal reasoning: applying qualitative causal knowledge to the interpretation of high-throughput data. PMID:24266983
Confero: an integrated contrast data and gene set platform for computational analysis and biological interpretation of omics data. PMID:23895370
Network2Canvas: network visualization on a canvas with enrichment analysis. PMID:23749960
GeneSetDB: A comprehensive meta-database, statistical and visualisation framework for gene set analysis. PMID:23650583
Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. PMID:23586463
Stem cell-like gene expression in ovarian cancer predicts type II subtype and prognosis. PMID:23536770
A microarray platform-independent classification tool for cell of origin class allows comparative analysis of gene expression in diffuse large B-cell lymphoma. PMID:23424639
Identifying master regulators of cancer and their downstream targets by integrating genomic and epigenomic features. PMID:23424118
A data similarity-based strategy for meta-analysis of transcriptional profiles in cancer. PMID:23383020
Exact statistical tests for the intersection of independent lists of genes. PMID:23335952
Expression profiling of archival tumors for long-term health studies. PMID:23136189
Transcriptional data: a new gateway to drug repositioning? PMID:22897878
Silencing of Irf7 pathways in breast cancer cells promotes bone metastasis through immune escape. PMID:22820642
iBBiG: iterative binary bi-clustering of gene sets. PMID:22789589
Integration of breast cancer gene signatures based on graph centrality. PMID:22784616
Genes2FANs: connecting genes through functional association networks. PMID:22748121
Prognostic PET 18F-FDG uptake imaging features are associated with major oncogenomic alterations in patients with resected non-small cell lung cancer. PMID:22710433
Network- and attribute-based classifiers can prioritize genes and pathways for autism spectrum disorders and intellectual disability. PMID:22499558
Liverome: a curated database of liver cancer-related gene signatures with self-contained context information. PMID:22369201
Angiogenic mRNA and microRNA gene expression signature predicts a novel subtype of serous ovarian cancer. PMID:22348002
A three-gene model to robustly identify breast cancer molecular subtypes. PMID:22262870
Comprehensive literature review and statistical considerations for microarray meta-analysis. PMID:22262733
Characterization and clinical evaluation of CD10+ stroma cells in the breast cancer microenvironment. PMID:22235100
The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons. PMID:22121217
GeneSigDB: a manually curated database and resource for analysis of gene expression signatures. PMID:22110038
Predictive networks: a flexible, open source, web application for integration and analysis of human gene networks. PMID:22096235
SIGNATURE: a workbench for gene expression signature analysis. PMID:22078435
Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments. PMID:22064864
Network based consensus gene signatures for biomarker discovery in breast cancer. PMID:22046239
3DSwap: curated knowledgebase of proteins involved in 3D domain swapping. PMID:21959866
Integrative computational biology for cancer research. PMID:21691773
Protein-network modeling of prostate cancer gene signatures reveals essential pathways in disease recurrence. PMID:21672909
Molecular signatures database (MSigDB) 3.0. PMID:21546393
Conceptual aspects of large meta-analyses with publicly available microarray data: a case study in oncology. PMID:21423405
Breast cancer biomarker discovery in the functional genomic age: a systematic review of 42 gene expression signatures. PMID:21082037
A novel tissue-specific meta-analysis approach for gene expression predictions, initiated with a mammalian gene expression testis database. PMID:20699007
Discovering causal signaling pathways through gene-expression patterns. PMID:20494976
Data reporting standards: making the things we use better. PMID:19939294
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bibliography
metasource: Fairsharing.org
version: FAIRsharing.org: GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; DOI: https://doi.org/10.25504/FAIRsharing.1ety1h; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
cancer
metasource: Fairsharing.org
version: FAIRsharing.org: GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; DOI: https://doi.org/10.25504/FAIRsharing.1ety1h; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
curated information
metasource: Fairsharing.org
version: FAIRsharing.org: GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; DOI: https://doi.org/10.25504/FAIRsharing.1ety1h; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; DOI: https://doi.org/10.25504/FAIRsharing.1ety1h; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; DOI: https://doi.org/10.25504/FAIRsharing.1ety1h; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Tags
More detailed information about this field from each metasource.
bibliography
metasource: Fairsharing.orgversion: FAIRsharing.org: GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; DOI: https://doi.org/10.25504/FAIRsharing.1ety1h; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
cancer
metasource: Fairsharing.orgversion: FAIRsharing.org: GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; DOI: https://doi.org/10.25504/FAIRsharing.1ety1h; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
curated information
metasource: Fairsharing.orgversion: FAIRsharing.org: GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; DOI: https://doi.org/10.25504/FAIRsharing.1ety1h; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; DOI: https://doi.org/10.25504/FAIRsharing.1ety1h; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; DOI: https://doi.org/10.25504/FAIRsharing.1ety1h; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
bibliography cancer gene gene expression
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