e-Mouse Atlas
Names
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e-Mouse Atlas
metasource: Fairsharing.org
version: FAIRsharing.org: EMA; e-Mouse Atlas; DOI: https://doi.org/10.25504/FAIRsharing.xhxe2j; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
EMA
metasource: Fairsharing.org
version: FAIRsharing.org: EMA; e-Mouse Atlas; DOI: https://doi.org/10.25504/FAIRsharing.xhxe2j; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Edinburgh Mouse Atlas EMAP
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:06.735983
emap
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:06.735983
Names
More detailed information about this field from each metasource.
e-Mouse Atlas
metasource: Fairsharing.orgversion: FAIRsharing.org: EMA; e-Mouse Atlas; DOI: https://doi.org/10.25504/FAIRsharing.xhxe2j; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
EMA
metasource: Fairsharing.orgversion: FAIRsharing.org: EMA; e-Mouse Atlas; DOI: https://doi.org/10.25504/FAIRsharing.xhxe2j; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Edinburgh Mouse Atlas EMAP
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:06.735983
emap
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:06.735983
Other names: EMA, Edinburgh Mouse Atlas EMAP, emap
Names
More detailed information about this field from each metasource.
e-Mouse Atlas
metasource: Fairsharing.orgversion: FAIRsharing.org: EMA; e-Mouse Atlas; DOI: https://doi.org/10.25504/FAIRsharing.xhxe2j; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
EMA
metasource: Fairsharing.orgversion: FAIRsharing.org: EMA; e-Mouse Atlas; DOI: https://doi.org/10.25504/FAIRsharing.xhxe2j; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Edinburgh Mouse Atlas EMAP
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:06.735983
emap
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:06.735983
The e-Mouse Atlas (EMA) is a detailed model of the developing mouse. Its purpose is not only to provide information about the shape, gross anatomy and detailed histological structure of the mouse, but also to provide a framework into which information about gene function can be mapped. The spatial, temporal and anatomical integration achieved by mapping diverse data to the organism itself rather than simply to database tables, allows powerful computational analyses. The website presents 3D volumetric models of the embryo linked, in most cases, to comprehensive and detailed images of histological structure. The embryo models and anatomy in EMA are organized by standard developmental stage (TS. after Theiler, 1989) and age of the embryo in days post coitum (dpc.). Gene-expression and other image data is also available.
Description
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The e-Mouse Atlas (EMA) is a detailed model of the developing mouse. Its purpose is not only to provide information about the shape, gross anatomy and detailed histological structure of the mouse, but also to provide a framework into which information about gene function can be mapped. The spatial, temporal and anatomical integration achieved by mapping diverse data to the organism itself rather than simply to database tables, allows powerful computational analyses. The website presents 3D volumetric models of the embryo linked, in most cases, to comprehensive and detailed images of histological structure. The embryo models and anatomy in EMA are organized by standard developmental stage (TS. after Theiler, 1989) and age of the embryo in days post coitum (dpc.). Gene-expression and other image data is also available.
metasource: Fairsharing.orgversion: FAIRsharing.org: EMA; e-Mouse Atlas; DOI: https://doi.org/10.25504/FAIRsharing.xhxe2j; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
A digital atlas of mouse embryonic development consisting of a database of the anatomical structures that are found at different stages of mouse embryo development, and a set of 3D volumetric digital embryo models at different stages of mouse development. It creates interactive three-dimensional computer models of mouse embryos at successive stages of development with defined anatomical domains linked to a stage-by-stage ontology of anatomical names.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:06.735983
Webpage:
http://www.emouseatlas.org/emap/ema/home.phpWebpage
More detailed information about this field from each metasource.
http://www.emouseatlas.org/emap/ema/home.php
metasource: Fairsharing.orgversion: FAIRsharing.org: EMA; e-Mouse Atlas; DOI: https://doi.org/10.25504/FAIRsharing.xhxe2j; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://www.emouseatlas.org/emap/home.html
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:06.735983
Licence:
Name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)Licence name
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Creative Commons Attribution 3.0 Unported (CC BY 3.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: EMA; e-Mouse Atlas; DOI: https://doi.org/10.25504/FAIRsharing.xhxe2j; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Licence URL
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https://creativecommons.org/licenses/by/3.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: EMA; e-Mouse Atlas; DOI: https://doi.org/10.25504/FAIRsharing.xhxe2j; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
EMAGE mouse embryo spatial gene expression database: 2014 update
PMID: 24265223
metasource: Fairsharing.org
version: FAIRsharing.org: EMA; e-Mouse Atlas; DOI: https://doi.org/10.25504/FAIRsharing.xhxe2j; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://dx.doi.org/10.1093/nar/gkt1155
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:06.735983
Publications
More detailed information about this field from each metasource.
EMAGE mouse embryo spatial gene expression database: 2014 update
PMID: 24265223
metasource: Fairsharing.org
version: FAIRsharing.org: EMA; e-Mouse Atlas; DOI: https://doi.org/10.25504/FAIRsharing.xhxe2j; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://dx.doi.org/10.1093/nar/gkt1155
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:06.735983
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EMAGE mouse embryo spatial gene expression database: 2014 update
PubMed citations: 65.
65 articles citing: EMAGE mouse embryo spatial gene expression database: 2014 update
Hinge point emergence in mammalian spinal neurulation. PMID:35561223
Epilepsy in Pregnancy-Management Principles and Focus on Valproate. PMID:35163292
Derivedness Index for Estimating Degree of Phenotypic Evolution of Embryos: A Study of Comparative Transcriptomic Analyses of Chordates and Echinoderms. PMID:34900995
Liver and brain differential expression of one-carbon metabolism genes during ontogenesis. PMID:34702858
Genetic predisposition to tinnitus in the UK Biobank population. PMID:34518561
Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis. PMID:34489600
Loss of CC2D1A in Glutamatergic Neurons Results in Autistic-Like Features in Mice. PMID:34132974
A single-embryo, single-cell time-resolved model for mouse gastrulation. PMID:33932341
Cadherins in early neural development. PMID:33796894
Dysregulated BMP signaling through ACVR1 impairs digit joint development in fibrodysplasia ossificans progressiva (FOP). PMID:33217406
Murine interfollicular epidermal differentiation is gradualistic with GRHL3 controlling progression from stem to transition cell states. PMID:33116143
Insights into olfactory ensheathing cell development from a laser-microdissection and transcriptome-profiling approach. PMID:32857879
Phf21b imprints the spatiotemporal epigenetic switch essential for neural stem cell differentiation. PMID:32820037
GCN5 acetylation is required for craniofacial chondrocyte maturation. PMID:32446700
Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids. PMID:32076263
Rabs in Signaling and Embryonic Development. PMID:32033485
The Developmental Gene Hypothesis for Punctuated Equilibrium: Combined Roles of Developmental Regulatory Genes and Transposable Elements. PMID:31943266
Single cell RNA-sequencing reveals cellular heterogeneity and trajectories of lineage specification during murine embryonic limb development. PMID:31874220
Toward a Common Coordinate Framework for the Human Body. PMID:31835027
Application of Computational Biology to Decode Brain Transcriptomes. PMID:31655213
N-cadherin stabilises neural identity by dampening anti-neural signals. PMID:31601548
Skeletal muscle mitochondrial function and exercise capacity are not impaired in mice with knockout of STAT3. PMID:31513449
Molecular architecture of lineage allocation and tissue organization in early mouse embryo. PMID:31391582
Emergence of structure in mouse embryos: Structural Entropy morphometry applied to digital models of embryonic anatomy. PMID:31276197
EmExplorer: a database for exploring time activation of gene expression in mammalian embryos. PMID:31164042
The modular organization of the cerebral cortex: Evolutionary significance and possible links to neurodevelopmental conditions. PMID:30303529
Oncogene Delta/Notch-Like EGF-Related Receptor Promotes Cell Proliferation, Invasion, and Migration in Hepatocellular Carcinoma and Predicts a Poor Prognosis. PMID:30235011
Wnt evolution and function shuffling in liberal and conservative chordate genomes. PMID:30045756
Ancient Origin of the CARD-Coiled Coil/Bcl10/MALT1-Like Paracaspase Signaling Complex Indicates Unknown Critical Functions. PMID:29881386
A quantitative method for staging mouse embryos based on limb morphometry. PMID:29540505
eHistology image and annotation data from the Kaufman Atlas of Mouse Development. PMID:29272399
DNER modulates the length, polarity and synaptogenesis of spiral ganglion neurons via the Notch signaling pathway. PMID:29207144
A molecular roadmap of the AGM region reveals BMPER as a novel regulator of HSC maturation. PMID:29093060
Sexually Dimorphic Epigenetic Regulation of Brain-Derived Neurotrophic Factor in Fetal Brain in the Valproic Acid Model of Autism Spectrum Disorder. PMID:29073621
History dependence and the continuum approximation breakdown: the impact of domain growth on Turing's instability. PMID:28413340
Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells. PMID:28332981
Ultrasound-guided spectral photoacoustic imaging of hemoglobin oxygenation during development. PMID:28270982
Stomach curvature is generated by left-right asymmetric gut morphogenesis. PMID:28242610
eMouseAtlas: An atlas-based resource for understanding mammalian embryogenesis. PMID:28161522
Scaling single-cell genomics from phenomenology to mechanism. PMID:28102262
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes. PMID:28053160
Brain transcriptome atlases: a computational perspective. PMID:27909802
RNA-seq based transcriptomic map reveals new insights into mouse salivary gland development and maturation. PMID:27852218
Sex and Tissue Specificity of Peg3 Promoters. PMID:27711129
Parallel evolution of male germline epigenetic poising and somatic development in animals. PMID:27294618
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design. PMID:27206491
Comparison between Timelines of Transcriptional Regulation in Mammals, Birds, and Teleost Fish Somitogenesis. PMID:27192554
A gonogenic stimulated transition of mouse embryonic stem cells with enhanced control of diverse differentiation pathways. PMID:27157261
Pdgfrb-Cre targets lymphatic endothelial cells of both venous and non-venous origins. PMID:27060598
Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus. PMID:27019019
Meta-analysis Reveals Genome-Wide Significance at 15q13 for Nonsyndromic Clefting of Both the Lip and the Palate, and Functional Analyses Implicate GREM1 As a Plausible Causative Gene. PMID:26968009
A disintegrin and metalloprotease 10 (ADAM10) is a central regulator of murine liver tissue homeostasis. PMID:26942887
Web-based volume slicer for 3D electron-microscopy data from EMDB. PMID:26876163
Cc2d1a Loss of Function Disrupts Functional and Morphological Development in Forebrain Neurons Leading to Cognitive and Social Deficits. PMID:26826102
MTD: a mammalian transcriptomic database to explore gene expression and regulation. PMID:26822098
p300 is not required for metabolic adaptation to endurance exercise training. PMID:26712218
Developing the eHistology Atlas. PMID:26500249
Neuropilin-2/Semaphorin-3F-mediated repulsion promotes inner hair cell innervation by spiral ganglion neurons. PMID:26302206
eMouseAtlas informatics: embryo atlas and gene expression database. PMID:26296321
Control of signaling-mediated clearance of apoptotic cells by the tumor suppressor p53. PMID:26228159
Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data. PMID:26208972
Deducing the stage of origin of Wilms' tumours from a developmental series of Wt1-mutant mice. PMID:26035382
GXD: a community resource of mouse Gene Expression Data. PMID:25939429
Transcriptional profiling of ectoderm specification to keratinocyte fate in human embryonic stem cells. PMID:25849374
The gene expression database for mouse development (GXD): putting developmental expression information at your fingertips. PMID:24958384 - http://dx.doi.org/10.1093/nar/gkt1155
Tags:
Tags
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biological imaging
metasource: Fairsharing.org
version: FAIRsharing.org: EMA; e-Mouse Atlas; DOI: https://doi.org/10.25504/FAIRsharing.xhxe2j; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene expression
metasource: Fairsharing.org
version: FAIRsharing.org: EMA; e-Mouse Atlas; DOI: https://doi.org/10.25504/FAIRsharing.xhxe2j; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
image
metasource: Fairsharing.org
version: FAIRsharing.org: EMA; e-Mouse Atlas; DOI: https://doi.org/10.25504/FAIRsharing.xhxe2j; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
life cycle stage
metasource: Fairsharing.org
version: FAIRsharing.org: EMA; e-Mouse Atlas; DOI: https://doi.org/10.25504/FAIRsharing.xhxe2j; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:06.735983
anatomy
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:06.735983
Tags
More detailed information about this field from each metasource.
biological imaging
metasource: Fairsharing.orgversion: FAIRsharing.org: EMA; e-Mouse Atlas; DOI: https://doi.org/10.25504/FAIRsharing.xhxe2j; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene expression
metasource: Fairsharing.orgversion: FAIRsharing.org: EMA; e-Mouse Atlas; DOI: https://doi.org/10.25504/FAIRsharing.xhxe2j; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
image
metasource: Fairsharing.orgversion: FAIRsharing.org: EMA; e-Mouse Atlas; DOI: https://doi.org/10.25504/FAIRsharing.xhxe2j; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
life cycle stage
metasource: Fairsharing.orgversion: FAIRsharing.org: EMA; e-Mouse Atlas; DOI: https://doi.org/10.25504/FAIRsharing.xhxe2j; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:06.735983
anatomy
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:06.735983
biological imaging gene expression life cycle stage model organisms anatomy
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