Human Coronavirus Spike Protein Based Multi-Epitope Vaccine against COVID-19 and Potential Future Zoonotic Coronaviruses by Using Immunoinformatic Approaches.
PMID:35891314
Reverse Vaccinology and Immunoinformatic Assisted Designing of a Multi-Epitopes Based Vaccine Against Nosocomial Burkholderia cepacia.
PMID:35875518
In silico designing of a multi-epitope vaccine against Burkholderia pseudomallei: reverse vaccinology and immunoinformatics.
PMID:35821357
Computer-Aided Multi-Epitope Vaccine Design against Enterobacter xiangfangensis.
PMID:35805383
Development of Multi-epitope Based Subunit Vaccine Against Crimean-Congo Hemorrhagic Fever Virus Using Reverse Vaccinology Approach.
PMID:35789799
Computational cancer neoantigen prediction: current status and recent advances.
PMID:35755950
CAVES: A Novel Tool for Comparative Analysis of Variant Epitope Sequences.
PMID:35746624
Immunoinformatic Design of a Multivalent Peptide Vaccine Against Mucormycosis: Targeting FTR1 Protein of Major Causative Fungi.
PMID:35720422
A reverse vaccinology approach on transmembrane carbonic anhydrases from Plasmodium species as vaccine candidates for malaria prevention.
PMID:35706028
HLA-B*57:01 Complexed to a CD8 T-Cell Epitope from the HSV-2 ICP22 Protein Binds NK and T Cells through KIR3DL1.
PMID:35632760
Designing of a Novel Multi-Antigenic Epitope-Based Vaccine against E. hormaechei: An Intergraded Reverse Vaccinology and Immunoinformatics Approach.
PMID:35632421
Development of Anticancer Peptides Using Artificial Intelligence and Combinational Therapy for Cancer Therapeutics.
PMID:35631583
Resilience of Spike-Specific Immunity Induced by COVID-19 Vaccines against SARS-CoV-2 Variants.
PMID:35625733
In silico design and analyses of a multi-epitope vaccine against Crimean-Congo hemorrhagic fever virus through reverse vaccinology and immunoinformatics approaches.
PMID:35610299
Multiple-Allele MHC Class II Epitope Engineering by a Molecular Dynamics-Based Evolution Protocol.
PMID:35572587
Vaccinomics to Design a Multi-Epitopes Vaccine for Acinetobacter baumannii.
PMID:35564967
dbPepNeo2.0: A Database for Human Tumor Neoantigen Peptides From Mass Spectrometry and TCR Recognition.
PMID:35493528
Therapeutic Vaccines Targeting Neoantigens to Induce T-Cell Immunity against Cancers.
PMID:35456701
HSV-2-Specific Human Female Reproductive Tract Tissue Resident Memory T Cells Recognize Diverse HSV Antigens.
PMID:35432373
Adult Memory T Cell Responses to the Respiratory Syncytial Virus Fusion Protein During a Single RSV Season (2018-2019).
PMID:35422803
Unsupervised Mining of HLA-I Peptidomes Reveals New Binding Motifs and Potential False Positives in the Community Database.
PMID:35386688
Designing of a Recombinant Multi-Epitopes Based Vaccine against Enterococcus mundtii Using Bioinformatics and Immunoinformatics Approaches.
PMID:35329417
NeoScore Integrates Characteristics of the Neoantigen:MHC Class I Interaction and Expression to Accurately Prioritize Immunogenic Neoantigens.
PMID:35304420
Structural Prediction of Peptide-MHC Binding Modes.
PMID:35298818
ImmuneData: an integrated data discovery system for immunology data repositories.
PMID:35262674
Upstream open reading frames regulate translation of cancer-associated transcripts and encode HLA-presented immunogenic tumor antigens.
PMID:35239002
Mutational signature profiling classifies subtypes of clinically different mismatch-repair-deficient tumours with a differential immunogenic response potential.
PMID:35197584
T cell response to intact SARS-CoV-2 includes coronavirus cross-reactive and variant-specific components.
PMID:35133988
The Perspective of DMPK on Recombinant Adeno-Associated Virus-Based Gene Therapy: Past Learning, Current Support, and Future Contribution.
PMID:35102450
Positional SHAP (PoSHAP) for Interpretation of machine learning models trained from biological sequences.
PMID:35089914
A Combinatorial in-silico, in-vitro and in-vivo Approach to Quantitatively Study Peptide Induced MHC Stability.
PMID:35087915
Computational construction of a glycoprotein multi-epitope subunit vaccine candidate for old and new South-African SARS-CoV-2 virus strains.
PMID:35071728
Multi-omic machine learning predictor of breast cancer therapy response.
PMID:34875674
In Silico Model Estimates the Clinical Trial Outcome of Cancer Vaccines.
PMID:34831269
Development of an in silico multi-epitope vaccine against SARS-COV-2 by précised immune-informatics approaches.
PMID:34746365
BCEPS: A Web Server to Predict Linear B Cell Epitopes with Enhanced Immunogenicity and Cross-Reactivity.
PMID:34685724
Towards A Novel Multi-Epitopes Chimeric Vaccine for Simulating Strong Immune Responses and Protection against Morganella morganii.
PMID:34682706
Designing a Multi-Epitope Vaccine against Chlamydia trachomatis by Employing Integrated Core Proteomics, Immuno-Informatics and In Silico Approaches.
PMID:34681096
Targeting public neoantigens for cancer immunotherapy.
PMID:34676374
Epitope-specific anti-PrP antibody toxicity: a comparative in-silico study of human and mouse prion proteins.
PMID:34632945
Natural and cryptic peptides dominate the immunopeptidome of atypical teratoid rhabdoid tumors.
PMID:34599019
Circulation of three genotypes and identification of unique mutations in neutralizing epitopes of infectious bronchitis virus in chickens in Bangladesh.
PMID:34480638
Personalized immunotherapy in cancer precision medicine.
PMID:34369137
Immunopeptidomics-Guided Warehouse Design for Peptide-Based Immunotherapy in Chronic Lymphocytic Leukemia.
PMID:34305947
Seq12, Seq12m, and Seq13m, peptide analogues of the spike glycoprotein shows antiviral properties against SARS-CoV-2: An in silico study through molecular docking, molecular dynamics simulation, and MM-PB/GBSA calculations.
PMID:34305174
Population-wide diversity and stability of serum antibody epitope repertoires against human microbiota.
PMID:34282338
Altered Actinobacteria and Firmicutes Phylum Associated Epitopes in Patients With Parkinson's Disease.
PMID:34276644
Predicting MHC-peptide binding affinity by differential boundary tree.
PMID:34252932
Recent progress on MHC-I epitope prediction in tumor immunotherapy.
PMID:34249407
Identification of viral-mediated pathogenic mechanisms in neurodegenerative diseases using network-based approaches.
PMID:34237135
Integrated Core Proteomics, Subtractive Proteomics, and Immunoinformatics Investigation to Unveil a Potential Multi-Epitope Vaccine against Schistosomiasis.
PMID:34208663
Multi-Epitope Vaccine Design Using an Immunoinformatic Approach for SARS-CoV-2.
PMID:34208061
NetCleave: an open-source algorithm for predicting C-terminal antigen processing for MHC-I and MHC-II.
PMID:34162981
Landscape and selection of vaccine epitopes in SARS-CoV-2.
PMID:34127050
Deciphering Human Leukocyte Antigen Susceptibility Maps From Immunopeptidomics Characterization in Oncology and Infections.
PMID:34123866
Conformational epitope matching and prediction based on protein surface spiral features.
PMID:34058977
Combination of highly antigenic nucleoproteins to inaugurate a cross-reactive next generation vaccine candidate against Arenaviridae family.
PMID:34041391
Epitope-Based Peptide Vaccine Design against Fructose Bisphosphate Aldolase of Candida glabrata: An Immunoinformatics Approach.
PMID:34036109
In silico design and in vitro expression of novel multiepitope DNA constructs based on HIV-1 proteins and Hsp70 T-cell epitopes.
PMID:33987776
Identification of linear epitopes on the flagellar proteins of Clostridioides difficile.
PMID:33976336
HLA-A2.1-restricted ECM1-derived epitope LA through DC cross-activation priming CD8+ T and NK cells: a novel therapeutic tumour vaccine.
PMID:33910591
A conserved region of Acinetobacter trimeric autotransporter adhesion, Ata, provokes suppression of Acinetobacter baumannii virulence.
PMID:33907866
Web resources facilitate drug discovery in treatment of COVID-19.
PMID:33892145
HLA Ligand Atlas: a benign reference of HLA-presented peptides to improve T-cell-based cancer immunotherapy.
PMID:33858848
Linear B-Cell Epitope Prediction for In Silico Vaccine Design: A Performance Review of Methods Available via Command-Line Interface.
PMID:33809918
Population-Predicted MHC Class II Epitope Presentation of SARS-CoV-2 Structural Proteins Correlates to the Case Fatality Rates of COVID-19 in Different Countries.
PMID:33807854
Nano-Enabled COVID-19 Vaccines: Meeting the Challenges of Durable Antibody Plus Cellular Immunity and Immune Escape.
PMID:33793189
Introduction of Non-natural Amino Acids Into T-Cell Epitopes to Mitigate Peptide-Specific T-Cell Responses.
PMID:33777029
Peptide-based therapeutic cancer vaccine: Current trends in clinical application.
PMID:33754407
T cell and antibody kinetics delineate SARS-CoV-2 peptides mediating long-term immune responses in COVID-19 convalescent individuals.
PMID:33723016
A Multiepitope Peptide, rOmp22, Encapsulated in Chitosan-PLGA Nanoparticles as a Candidate Vaccine Against Acinetobacter baumannii Infection.
PMID:33707942
Antigen-Specific Treatment Modalities in MS: The Past, the Present, and the Future.
PMID:33679769
COVIEdb: A Database for Potential Immune Epitopes of Coronaviruses.
PMID:33628169
The Peptide Vaccine of the Future.
PMID:33583769
Immunoinformatics Approach for the Identification and Characterization of T Cell and B Cell Epitopes towards the Peptide-Based Vaccine against SARS-CoV-2.
PMID:33546870
Comprehensive epitope mapping using polyclonally expanded human CD8 T cells and a two-step ELISpot assay for testing large peptide libraries.
PMID:33529681
In-host population dynamics of Mycobacterium tuberculosis complex during active disease.
PMID:33522489
In silico and in vitro Evaluation of Mimetic Peptides as Potential Antigen Candidates for Prophylaxis of Leishmaniosis.
PMID:33520931
SARS-CoV-2 and other human coronaviruses: Mapping of protease recognition sites, antigenic variation of spike protein and their grouping through molecular phylogenetics.
PMID:33497837
In Silico Identification of New Targets for Diagnosis, Vaccine, and Drug Candidates against Trypanosoma cruzi.
PMID:33488847
Comparison of the SARS-CoV-2 (2019-nCoV) M protein with its counterparts of SARS-CoV and MERS-CoV species.
PMID:33432259
Designing of a next generation multiepitope based vaccine (MEV) against SARS-COV-2: Immunoinformatics and in silico approaches.
PMID:33351863
Rapid microsphere-assisted peptide screening (MAPS) of promiscuous MHCII-binding peptides in Zika virus envelope protein.
PMID:33343002
Like Wings of a Bird: Functional Divergence and Complementarity between HLA-A and HLA-B Molecules.
PMID:33320202
Protective multi-epitope candidate vaccine for urinary tract infection.
PMID:33304840
An Immunoinformatics Study to Predict Epitopes in the Envelope Protein of SARS-CoV-2.
PMID:33299503
Cationic Polymers for the Delivery of the Ebola DNA Vaccine Encoding Artificial T-Cell Immunogen.
PMID:33271964
SITC cancer immunotherapy resource document: a compass in the land of biomarker discovery.
PMID:33268350
SARS-CoV-2 and Plasmodium falciparum common immunodominant regions may explain low COVID-19 incidence in the malaria-endemic belt.
PMID:33230417
A multiple peptides vaccine against COVID-19 designed from the nucleocapsid phosphoprotein (N) and Spike Glycoprotein (S) via the immunoinformatics approach.
PMID:33200089
iLBE for Computational Identification of Linear B-cell Epitopes by Integrating Sequence and Evolutionary Features.
PMID:33099033
Spike protein-based epitopes predicted against SARS-CoV-2 through literature mining.
PMID:33052325
Exploration of surface glycoprotein to design multi-epitope vaccine for the prevention of Covid-19.
PMID:33043110
Immunoinformatics approach to understand molecular interaction between multi-epitopic regions of SARS-CoV-2 spike-protein with TLR4/MD-2 complex.
PMID:33039603
Main Strategies for the Identification of Neoantigens.
PMID:33036391
Benchmarking evolutionary tinkering underlying human-viral molecular mimicry shows multiple host pulmonary-arterial peptides mimicked by SARS-CoV-2.
PMID:33024578
SARS-CoV-2-derived peptides define heterologous and COVID-19-induced T cell recognition.
PMID:32999467
High-resolution epitope mapping of anti-Hu and anti-Yo autoimmunity by programmable phage display.
PMID:32954318
Analysis of Putative Epitope Candidates of Mycobacterium tuberculosis Against Pakistani Human Leukocyte Antigen Background: An Immunoinformatic Study for the Development of Future Vaccine.
PMID:32922244
Genome based evolutionary lineage of SARS-CoV-2 towards the development of novel chimeric vaccine.
PMID:32882432
Combining Three-Dimensional Modeling with Artificial Intelligence to Increase Specificity and Precision in Peptide-MHC Binding Predictions.
PMID:32878910
Vaccine design of coronavirus spike (S) glycoprotein in chicken: immunoinformatics and computational approaches.
PMID:32869000
Antigen processing and presentation in cancer immunotherapy.
PMID:32859742
Integrated genomic analysis reveals mutated ELF3 as a potential gallbladder cancer vaccine candidate.
PMID:32839463
Identification B and T-Cell epitopes and functional exposed amino acids of S protein as a potential vaccine candidate against SARS-CoV-2/COVID-19.
PMID:32835775
Comprehensive genome based analysis of Vibrio parahaemolyticus for identifying novel drug and vaccine molecules: Subtractive proteomics and vaccinomics approach.
PMID:32813697
Specificity of the T Cell Response to Protein Biopharmaceuticals.
PMID:32793213
Designing Multi-Epitope Vaccines to Combat Emerging Coronavirus Disease 2019 (COVID-19) by Employing Immuno-Informatics Approach.
PMID:32754160
Proteome-Wide Zika Virus CD4 T Cell Epitope and HLA Restriction Determination.
PMID:32753403
A Pan-Specific GRU-Based Recurrent Neural Network for Predicting HLA-I-Binding Peptides.
PMID:32743207
SARS-CoV-2 and Guillain-Barré syndrome: molecular mimicry with human heat shock proteins as potential pathogenic mechanism.
PMID:32729001
Advances in Fungal Peptide Vaccines.
PMID:32722452
Deep learning methods improve linear B-cell epitope prediction.
PMID:32699555
T-Cell Dependent Immunogenicity of Protein Therapeutics Pre-clinical Assessment and Mitigation-Updated Consensus and Review 2020.
PMID:32695107
Structure-based drug designing and immunoinformatics approach for SARS-CoV-2.
PMID:32691011
HLA-Arena: A Customizable Environment for the Structural Modeling and Analysis of Peptide-HLA Complexes for Cancer Immunotherapy.
PMID:32667823
MHCAttnNet: predicting MHC-peptide bindings for MHC alleles classes I and II using an attention-based deep neural model.
PMID:32657386
Ancestral origin, antigenic resemblance and epidemiological insights of novel coronavirus (SARS-CoV-2): Global burden and Bangladesh perspective.
PMID:32622082
Nanomedicine and Onco-Immunotherapy: From the Bench to Bedside to Biomarkers.
PMID:32610601
Landscape and Selection of Vaccine Epitopes in SARS-CoV-2.
PMID:32577654
Impact of Cysteine Residues on MHC Binding Predictions and Recognition by Tumor-Reactive T Cells.
PMID:32571843
Cancer Moonshot Immuno-Oncology Translational Network (IOTN): accelerating the clinical translation of basic discoveries for improving immunotherapy and immunoprevention of cancer.
PMID:32554617
Dendritic Cell-Based Therapy Using LY6E Peptide with a Putative Role Against Colorectal Cancer.
PMID:32548075
Personalized neoantigen vaccination with synthetic long peptides: recent advances and future perspectives.
PMID:32483434
Is molecular mimicry the culprit in the autoimmune haemolytic anaemia affecting patients with COVID-19?
PMID:32453861
Benchmarking predictions of MHC class I restricted T cell epitopes in a comprehensively studied model system.
PMID:32453790
Sequence-structure-function relationships in class I MHC: A local frustration perspective.
PMID:32421728
Study of the Binding Pattern of HLA Class I Alleles of Indian Frequency and cTAP Binding Peptide for Chikungunya Vaccine Development.
PMID:32421074
Heterogeneity of neoantigen landscape between primary lesions and their matched metastases in lung cancer.
PMID:32420064
High throughput and comprehensive approach to develop multiepitope vaccine against minacious COVID-19.
PMID:32417398
Preclinical Studies of the Off-Target Reactivity of AFP158-Specific TCR Engineered T Cells.
PMID:32395117
The Bioinformatic and In Vitro Studies of Clostridioides Difficile Aminopeptidase M24 Revealed the Immunoreactive KKGIK Peptide.
PMID:32392707
Epitope-Based Peptide Vaccine against Glycoprotein G of Nipah Henipavirus Using Immunoinformatics Approaches.
PMID:32377531
In-silico identification of the vaccine candidate epitopes against the Lassa virus hemorrhagic fever.
PMID:32376973
Molecular mimicry between SARS-CoV-2 and respiratory pacemaker neurons.
PMID:32361194
A Review of Deep Learning Methods for Antibodies.
PMID:32354020
Disordered epitopes as peptide vaccines.
PMID:32328540
Computational Modeling and Analysis to Predict Intracellular Parasite Epitope Characteristics Using Random Forest Technique.
PMID:32309231
Radiation-induced small extracellular vesicles as "carriages" promote tumor antigen release and trigger antitumor immunity.
PMID:32308755
ProGeo-neo: a customized proteogenomic workflow for neoantigen prediction and selection.
PMID:32241270
Prevalent and Diverse Intratumoral Oncoprotein-Specific CD8+ T Cells within Polyomavirus-Driven Merkel Cell Carcinomas.
PMID:32179557
Harnessing neoantigen specific CD4 T cells for cancer immunotherapy.
PMID:32170883
Hybrid Antigens Expressing Surface Loops of ZnuD From Acinetobacter baumannii Is Capable of Inducing Protection Against Infection.
PMID:32117294
dbPepNeo: a manually curated database for human tumor neoantigen peptides.
PMID:32090262
Predicting clinical benefit of immunotherapy by antigenic or functional mutations affecting tumour immunogenicity.
PMID:32075964
A possible role for autoimmunity through molecular mimicry in alphavirus mediated arthritis.
PMID:31969581
BioDADPep: A Bioinformatics database for anti diabetic peptides.
PMID:31902976
Identification of highly conserved, serotype-specific dengue virus sequences: implications for vaccine design.
PMID:31874646
High-Throughput Prediction of MHC Class I and II Neoantigens with MHCnuggets.
PMID:31871119
Neoantigen Fitness Model Predicts Lower Immune Recognition of Cutaneous Squamous Cell Carcinomas Than Actinic Keratoses.
PMID:31849976
Mass Spectrometry Based Immunopeptidomics Leads to Robust Predictions of Phosphorylated HLA Class I Ligands.
PMID:31848261
A large peptidome dataset improves HLA class I epitope prediction across most of the human population.
PMID:31844290
Analysis of Secondary Structure Biases in Naturally Presented HLA-I Ligands.
PMID:31824508
Computational assembly of a human Cytomegalovirus vaccine upon experimental epitope legacy.
PMID:31823715
Constrained De Novo Sequencing of neo-Epitope Peptides using Tandem Mass Spectrometry.
PMID:31819927
Considering Genomic and Immunological Correlates of Protection for a Dengue Intervention.
PMID:31816907
Immunoinformatics Approach for Multiepitope Vaccine Prediction from H, M, F, and N Proteins of Peste des Petits Ruminants Virus.
PMID:31781679
Identification and ranking of recurrent neo-epitopes in cancer.
PMID:31775766
pMHC Structural Comparisons as a Pivotal Element to Detect and Validate T-Cell Targets for Vaccine Development and Immunotherapy-A New Methodological Proposal.
PMID:31766602
The Immune Epitope Database and Analysis Resource Program 2003-2018: reflections and outlook.
PMID:31761977
An overview of immunoinformatics approaches and databases linking T cell receptor repertoires to their antigen specificity.
PMID:31741011
Mapping Epitopes of a Novel Peptidoglycan Cross-Linking Enzyme Cwp22 Recognized by Human Sera Obtained from Patients with Clostridioides difficile Infection and Cord Blood.
PMID:31739602
DeepHLApan: A Deep Learning Approach for Neoantigen Prediction Considering Both HLA-Peptide Binding and Immunogenicity.
PMID:31736974
A comprehensive analysis of amino-peptidase N1 protein (APN) from Anopheles culicifacies for epitope design using Immuno-informatics models.
PMID:31719771
TCR Fingerprinting and Off-Target Peptide Identification.
PMID:31695703
Predicting HLA class II antigen presentation through integrated deep learning.
PMID:31611695
Neoantigen Dissimilarity to the Self-Proteome Predicts Immunogenicity and Response to Immune Checkpoint Blockade.
PMID:31606370
TCRpMHCmodels: Structural modelling of TCR-pMHC class I complexes.
PMID:31601838
Rapid selection and identification of functional CD8+ T cell epitopes from large peptide-coding libraries.
PMID:31591401
Uncovering Thousands of New Peptides with Sequence-Mask-Search Hybrid De Novo Peptide Sequencing Framework.
PMID:31591261
Next-generation computational tools for interrogating cancer immunity.
PMID:31515541
Tumor neoantigens: from basic research to clinical applications.
PMID:31492199
Improvement of Epitope Prediction Using Peptide Sequence Descriptors and Machine Learning.
PMID:31491969
A general approach for predicting protein epitopes targeted by antibody repertoires using whole proteomes.
PMID:31490930
The new identified biomarkers determine sensitivity to immune check-point blockade therapies in melanoma.
PMID:31413919
Preliminary studies on development of a novel subunit vaccine targeting Clostridium perfringens mucolytic enzymes for the control of necrotic enteritis in broilers.
PMID:31392320
Computational Analysis of HLA-presentation of Non-synonymous Recipient Mismatches Indicates Effect on the Risk of Chronic Graft-vs.-Host Disease After Allogeneic HSCT.
PMID:31379830
Optimization of a nicotine degrading enzyme for potential use in treatment of nicotine addiction.
PMID:31375100
Peptide-Based Subunit Vaccine Design of T- and B-Cells Multi-Epitopes against Zika Virus Using Immunoinformatics Approaches.
PMID:31370224
Identification of Novel Respiratory Syncytial Virus CD4+ and CD8+ T Cell Epitopes in C57BL/6 Mice.
PMID:31356172
Evaluating a Multiscale Mechanistic Model of the Immune System to Predict Human Immunogenicity for a Biotherapeutic in Phase 1.
PMID:31342199
Immune-orthogonal orthologues of AAV capsids and of Cas9 circumvent the immune response to the administration of gene therapy.
PMID:31332341
Delineating the Plausible Molecular Vaccine Candidates and Drug Targets of Multidrug-Resistant Acinetobacter baumannii.
PMID:31281799
A comprehensive review and performance evaluation of bioinformatics tools for HLA class I peptide-binding prediction.
PMID:31204427
Cross-Reactivity as a Mechanism Linking Infections to Stroke.
PMID:31156531
The Immune Contexture Associates with the Genomic Landscape in Lung Adenomatous Premalignancy.
PMID:31142513
MHCSeqNet: a deep neural network model for universal MHC binding prediction.
PMID:31138107
The expanding role of systems immunology in decoding the T cell receptor repertoire.
PMID:31106281
HLA associations in inflammatory arthritis: emerging mechanisms and clinical implications.
PMID:31092910
Delineating Surface Epitopes of Lyme Disease Pathogen Targeted by Highly Protective Antibodies of New Zealand White Rabbits.
PMID:31085705
The combination of neoantigen quality and T lymphocyte infiltrates identifies glioblastomas with the longest survival.
PMID:31044160
Genome-Wide Approach to the CD4 T-Cell Response to Human Herpesvirus 6B.
PMID:31043533
Multifunctional CRISPR-Cas9 with engineered immunosilenced human T cell epitopes.
PMID:31015529
Immunoinformatics Approach for Multiepitopes Vaccine Prediction against Glycoprotein B of Avian Infectious Laryngotracheitis Virus.
PMID:31011331
First Evidence of Antibodies Against Lloviu Virus in Schreiber's Bent-Winged Insectivorous Bats Demonstrate a Wide Circulation of the Virus in Spain.
PMID:31010201
Vive la difference! Self/non-self recognition and the evolution of signatures of identity in arms races with parasites.
PMID:30967089
Comprehensive Review of Human Plasmodium falciparum-Specific CD8+ T Cell Epitopes.
PMID:30949162
Design and molecular dynamic simulation of a new double-epitope tolerogenic protein as a potential vaccine for multiple sclerosis disease.
PMID:30936929
In silico Designed Ebola Virus T-Cell Multi-Epitope DNA Vaccine Constructions Are Immunogenic in Mice.
PMID:30934980
Genomic epidemiology of erythromycin-resistant Bordetella pertussis in China.
PMID:30898080
Antibody Specific B-Cell Epitope Predictions: Leveraging Information From Antibody-Antigen Protein Complexes.
PMID:30863406
Protein-Catalyzed Capture Agents.
PMID:30838853
Pro-inflammatory Cytokines Alter the Immunopeptidome Landscape by Modulation of HLA-B Expression.
PMID:30833945
Evidence for Highly Variable, Region-Specific Patterns of T-Cell Epitope Mutations Accumulating in Mycobacterium tuberculosis Strains.
PMID:30814998
Successive crystal structure snapshots suggest the basis for MHC class I peptide loading and editing by tapasin.
PMID:30808808
Most viral peptides displayed by class I MHC on infected cells are immunogenic.
PMID:30718433
Pathogen diversity drives the evolution of generalist MHC-II alleles in human populations.
PMID:30703088
T cell antigen discovery via signaling and antigen-presenting bifunctional receptors.
PMID:30700902
DeepSeqPan, a novel deep convolutional neural network model for pan-specific class I HLA-peptide binding affinity prediction.
PMID:30692623
Deimmunizing substitutions in Pseudomonas exotoxin domain III perturb antigen processing without eliminating T-cell epitopes.
PMID:30683694
Perspective: The promises of a holistic view of proteins-impact on antibody engineering and drug discovery.
PMID:30630879
Reduced bonobo MHC class I diversity predicts a reduced viral peptide binding ability compared to chimpanzees.
PMID:30630404
Predicting peptide presentation by major histocompatibility complex class I: an improved machine learning approach to the immunopeptidome.
PMID:30611210
Synthetic biology for bioengineering virus-like particle vaccines.
PMID:30597533
GLUE: a flexible software system for virus sequence data.
PMID:30563445
Deep learning using tumor HLA peptide mass spectrometry datasets improves neoantigen identification.
PMID:30556813
Epitope-Based Peptide Vaccine Against Fructose-Bisphosphate Aldolase of Madurella mycetomatis Using Immunoinformatics Approaches.
PMID:30542244
Specific MHC-I Peptides Are Induced Using PROTACs.
PMID:30524438
Epitope Specific Antibodies and T Cell Receptors in the Immune Epitope Database.
PMID:30515166
Accounting for proximal variants improves neoantigen prediction.
PMID:30510237
Footprints of antigen processing boost MHC class II natural ligand predictions.
PMID:30446001
PRBAM: a new tool to analyze the MHC class I and HLA-DR anchor motifs.
PMID:30408168
Systematically benchmarking peptide-MHC binding predictors: From synthetic to naturally processed epitopes.
PMID:30408041
Human Disease Ontology 2018 update: classification, content and workflow expansion.
PMID:30407550
The nature of the human T cell response to the cancer antigen 5T4 is determined by the balance of regulatory and inflammatory T cells of the same antigen-specificity: implications for vaccine design.
PMID:30406375
Predicting CD4 T-cell epitopes based on antigen cleavage, MHCII presentation, and TCR recognition.
PMID:30399156
Exploring NS3/4A, NS5A and NS5B proteins to design conserved subunit multi-epitope vaccine against HCV utilizing immunoinformatics approaches.
PMID:30382118
Predicting T cell recognition of MHC class I restricted neoepitopes.
PMID:30377561
The Immune Epitope Database (IEDB): 2018 update.
PMID:30357391
A comprehensive in silico analysis for identification of therapeutic epitopes in HPV16, 18, 31 and 45 oncoproteins.
PMID:30356257
Antigen discovery and specification of immunodominance hierarchies for MHCII-restricted epitopes.
PMID:30349087
Analysis of impact metrics for the Protein Data Bank.
PMID:30325351
Genomic coordinates and continental distribution of 120 blood group variants reported by the 1000 Genomes Project.
PMID:30312480
Peanut-specific T cell responses in patients with different clinical reactivity.
PMID:30304054
Systematic identification of cancer-specific MHC-binding peptides with RAVEN.
PMID:30228952
Epitopes identified in GAPDH from Clostridium difficile recognized as common antigens with potential autoimmunizing properties.
PMID:30224677
TSNAdb: A Database for Tumor-specific Neoantigens from Immunogenomics Data Analysis.
PMID:30223042
When designing vaccines, consider the starting material: the human B cell repertoire.
PMID:30190230
Linear epitopes in Onchocerca volvulus vaccine candidate proteins and excretory-secretory proteins.
PMID:30188578
Pan-Genomic Study of Mycobacterium tuberculosis Reflecting the Primary/Secondary Genes, Generality/Individuality, and the Interconversion Through Copy Number Variations.
PMID:30177918
Development and characterization of a novel monoclonal antibody that recognizes an epitope in the central protein interaction domain of RapGEF1 (C3G).
PMID:30143974
Determination of a Predictive Cleavage Motif for Eluted Major Histocompatibility Complex Class II Ligands.
PMID:30127785
PIP-EL: A New Ensemble Learning Method for Improved Proinflammatory Peptide Predictions.
PMID:30108593
A Role for Epitope Networking in Immunomodulation by Helminths.
PMID:30108588
Schistosoma mansoni SmKI-1 or Its C-Terminal Fragment Induces Partial Protection Against S. mansoni Infection in Mice.
PMID:30105029
iBCE-EL: A New Ensemble Learning Framework for Improved Linear B-Cell Epitope Prediction.
PMID:30100904
Urea Cycle Dysregulation Generates Clinically Relevant Genomic and Biochemical Signatures.
PMID:30100185
Predicting Antigen Presentation-What Could We Learn From a Million Peptides?
PMID:30090105
Differing epidemiological dynamics of Chikungunya virus in the Americas during the 2014-2015 epidemic.
PMID:30059496
Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches.
PMID:30050166
The role of proteomics in the age of immunotherapies.
PMID:30046851
Analysis of CD8+ T cell response during the 2013-2016 Ebola epidemic in West Africa.
PMID:30038008
Novel frontiers in detecting cancer metastasis.
PMID:30022365
Development of a novel clustering tool for linear peptide sequences.
PMID:30014462
Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.
PMID:30013184
Peptide presentation by HLA-DQ molecules is associated with the development of immune tolerance.
PMID:30002966
Trans-Allelic Model for Prediction of Peptide:MHC-II Interactions.
PMID:29988560
Predicting HLA CD4 Immunogenicity in Human Populations.
PMID:29963059
A clinically applicable adjuvant for an atherosclerosis vaccine in mice.
PMID:29932463
Prediction of T-cell epitopes for designing a reverse vaccine against streptococcal bacteria.
PMID:29911121
LeptoDB: an integrated database of genomics and proteomics resource of Leptospira.
PMID:29905762
Divergent Allele Advantage at Human MHC Genes: Signatures of Past and Ongoing Selection.
PMID:29893875
Postgenomic Approaches and Bioinformatics Tools to Advance the Development of Vaccines against Bacteria of the Burkholderia cepacia Complex.
PMID:29890657
ImmunomeBrowser: a tool to aggregate and visualize complex and heterogeneous epitopes in reference proteins.
PMID:29878047
Identification of Surface Epitopes Associated with Protection against Highly Immune-Evasive VlsE-Expressing Lyme Disease Spirochetes.
PMID:29866906
DNA immunization site determines the level of gene expression and the magnitude, but not the type of the induced immune response.
PMID:29864114
Negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome.
PMID:29855388
Polymorphic sites preferentially avoid co-evolving residues in MHC class I proteins.
PMID:29782520
Nature of tumour rejection antigens in ovarian cancer.
PMID:29772069
Higher baseline viral diversity correlates with lower HBsAg decline following PEGylated interferon-alpha therapy in patients with HBeAg-positive chronic hepatitis B.
PMID:29765238
Update on Tumor Neoantigens and Their Utility: Why It Is Good to Be Different.
PMID:29751996
Microbiota epitope similarity either dampens or enhances the immunogenicity of disease-associated antigenic epitopes.
PMID:29734356
The C-terminal extension landscape of naturally presented HLA-I ligands.
PMID:29712860
Cross-sectional analysis of CD8 T cell immunity to human herpesvirus 6B.
PMID:29698478
Complexity of type-specific 56 kDa antigen CD4 T-cell epitopes of Orientia tsutsugamushi strains causing scrub typhus in India.
PMID:29698425
AntiTbPdb: a knowledgebase of anti-tubercular peptides.
PMID:29688365
Identification of errors in the IEDB using ontologies.
PMID:29688357
FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability.
PMID:29688354
Mapping the tumour human leukocyte antigen (HLA) ligandome by mass spectrometry.
PMID:29658117
Peptide Sharing Between Viruses and DLX Proteins: A Potential Cross-Reactivity Pathway to Neuropsychiatric Disorders.
PMID:29618965
NetH2pan: A Computational Tool to Guide MHC Peptide Prediction on Murine Tumors.
PMID:29615400
Trypanosoma cruzi 80 kDa prolyl oligopeptidase (Tc80) as a novel immunogen for Chagas disease vaccine.
PMID:29601585
Frequency of Interferon-Resistance Conferring Substitutions in Amino Acid Positions 70 and 91 of Core Protein of the Russian HCV 1b Isolates Analyzed in the T-Cell Epitopic Context.
PMID:29577052
Immunomolecular Characterization of MIC-1, a Novel Antigen in Babesia bigemina, Which Contains Conserved and Immunodominant B-Cell Epitopes that Induce Neutralizing Antibodies.
PMID:29570654
Low HLA binding of diabetes-associated CD8+ T-cell epitopes is increased by post translational modifications.
PMID:29562882
Role of genetic heterogeneity in determining the epidemiological severity of H1N1 influenza.
PMID:29561846
In silico prediction of cancer immunogens: current state of the art.
PMID:29544447
General Prediction of Peptide-MHC Binding Modes Using Incremental Docking: A Proof of Concept.
PMID:29531253
Current progress of immunoinformatics approach harnessed for cellular- and antibody-dependent vaccine design.
PMID:29528265
Computational Strategies for Dissecting the High-Dimensional Complexity of Adaptive Immune Repertoires.
PMID:29515569
Cross-modality deep learning-based prediction of TAP binding and naturally processed peptide.
PMID:29492592
Allergen and Epitope Targets of Mouse-Specific T Cell Responses in Allergy and Asthma.
PMID:29487600
Protective Effect of Human Leukocyte Antigen (HLA) Allele DRB1*13:02 on Age-Related Brain Gray Matter Volume Reduction in Healthy Women.
PMID:29452862
Prostaglandin D2 Receptor DP1 Antibodies Predict Vaccine-induced and Spontaneous Narcolepsy Type 1: Large-scale Study of Antibody Profiling.
PMID:29449194
Fundamentals and Methods for T- and B-Cell Epitope Prediction.
PMID:29445754
A Recurrent Mutation in Anaplastic Lymphoma Kinase with Distinct Neoepitope Conformations.
PMID:29441070
Identification of a Novel CD8 T Cell Epitope Derived from Plasmodium berghei Protective Liver-Stage Antigen.
PMID:29434602
Mapping HLA-A2, -A3 and -B7 supertype-restricted T-cell epitopes in the ebolavirus proteome.
PMID:29363421
Computational Tools for the Identification and Interpretation of Sequence Motifs in Immunopeptidomes.
PMID:29327813
In silico epitope mapping and experimental evaluation of the Merozoite Adhesive Erythrocytic Binding Protein (MAEBL) as a malaria vaccine candidate.
PMID:29316918
Improved methods for predicting peptide binding affinity to MHC class II molecules.
PMID:29315598
The Role of Mass Spectrometry and Proteogenomics in the Advancement of HLA Epitope Prediction.
PMID:29314742
Immunopharmacogenomics towards personalized cancer immunotherapy targeting neoantigens.
PMID:29288513
Expitope 2.0: a tool to assess immunotherapeutic antigens for their potential cross-reactivity against naturally expressed proteins in human tissues.
PMID:29282079
Deep convolutional neural networks for pan-specific peptide-MHC class I binding prediction.
PMID:29281985
An automated benchmarking platform for MHC class II binding prediction methods.
PMID:29281002
Informatics for cancer immunotherapy.
PMID:29253114
Preclinical and clinical development of neoantigen vaccines.
PMID:29253113
Live Attenuated Influenza Vaccines engineered to express the nucleoprotein of a recent isolate stimulate human influenza CD8+ T cells more relevant to current infections.
PMID:29252117
High-throughput and Sensitive Immunopeptidomics Platform Reveals Profound Interferonγ-Mediated Remodeling of the Human Leukocyte Antigen (HLA) Ligandome.
PMID:29242379
Cloning, expression and purification of a polytopic antigen comprising of surface antigens of Toxoplasma gondii.
PMID:29238461
AllerBase: a comprehensive allergen knowledgebase.
PMID:29220458
Computationally-driven identification of antibody epitopes.
PMID:29199956
IL17eScan: A Tool for the Identification of Peptides Inducing IL-17 Response.
PMID:29163505
A neoantigen fitness model predicts tumour response to checkpoint blockade immunotherapy.
PMID:29132144
MHC-I Genotype Restricts the Oncogenic Mutational Landscape.
PMID:29107334
Discovery of T-cell Driven Subunit Vaccines from Zika Virus Genome: An Immunoinformatics Approach.
PMID:29094318
Analysis of predicted B and T-cell epitopes in Der p 23, allergen from Dermatophagoides pteronyssinus.
PMID:29081610
Interpreting T-Cell Cross-reactivity through Structure: Implications for TCR-Based Cancer Immunotherapy.
PMID:29046675
The SysteMHC Atlas project.
PMID:28985418
DRREP: deep ridge regressed epitope predictor.
PMID:28984193
NetMHCpan-4.0: Improved Peptide-MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data.
PMID:28978689
VDJdb: a curated database of T-cell receptor sequences with known antigen specificity.
PMID:28977646
Mutational Analysis of Gene Fusions Predicts Novel MHC Class I-Restricted T-Cell Epitopes and Immune Signatures in a Subset of Prostate Cancer.
PMID:28954787
High somatic mutation and neoantigen burden are correlated with decreased progression-free survival in multiple myeloma.
PMID:28937974
Viral based vaccine TG4010 induces broadening of specific immune response and improves outcome in advanced NSCLC.
PMID:28923084
Induction of Paralysis and Visual System Injury in Mice by T Cells Specific for Neuromyelitis Optica Autoantigen Aquaporin-4.
PMID:28872108
The molecular basis for peptide repertoire selection in the human leucocyte antigen (HLA) C*06:02 molecule.
PMID:28855257
Heterogeneous Tumor-Immune Microenvironments among Differentially Growing Metastases in an Ovarian Cancer Patient.
PMID:28841418
Development of a strategy and computational application to select candidate protein analogues with reduced HLA binding and immunogenicity.
PMID:28833085
Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity.
PMID:28832583
On the feasibility of mining CD8+ T cell receptor patterns underlying immunogenic peptide recognition.
PMID:28779185
Tools to define the melanoma-associated immunopeptidome.
PMID:28755382
Sharpening the Edge for Precision Cancer Immunotherapy: Targeting Tumor Antigens through Oncolytic Vaccines.
PMID:28751892
The ADAMTS131239-1253 peptide is a dominant HLA-DR1-restricted CD4+ T-cell epitope.
PMID:28751567
Discovery of a microbial transglutaminase enabling highly site-specific labeling of proteins.
PMID:28751378
Detection of brain-directed autoantibodies in the serum of non-small cell lung cancer patients.
PMID:28746384
Identification of putative unique immunogenic ZIKV and DENV1-4 peptides for diagnostic cellular based tests.
PMID:28740150
Genotype-specific acquisition, evolution and adaptation of characteristic mutations in hepatitis E virus.
PMID:28727933
Epitope determination of immunogenic proteins of Neisseria gonorrhoeae.
PMID:28723967
Identification of Natural Regulatory T Cell Epitopes Reveals Convergence on a Dominant Autoantigen.
PMID:28709804
Dual non-contiguous peptide occupancy of HLA class I evoke antiviral human CD8 T cell response and form neo-epitopes with self-antigens.
PMID:28698575
A Fast and Inexpensive Protocol for Empirical Verification of Neutralizing Epitopes in Microbial Toxins and Enzymes.
PMID:28660200
MFPred: Rapid and accurate prediction of protein-peptide recognition multispecificity using self-consistent mean field theory.
PMID:28650961
T cells from patients with Parkinson's disease recognize α-synuclein peptides.
PMID:28636593
The Immune Epitope Database: How Data Are Entered and Retrieved.
PMID:28634590
NOG-hIL-4-Tg, a new humanized mouse model for producing tumor antigen-specific IgG antibody by peptide vaccination.
PMID:28617827
Identification of diagnostic peptide regions that distinguish Zika virus from related mosquito-borne Flaviviruses.
PMID:28562637
Machine learning reveals a non-canonical mode of peptide binding to MHC class II molecules.
PMID:28542831
Structural Definition of Duck Major Histocompatibility Complex Class I Molecules That Might Explain Efficient Cytotoxic T Lymphocyte Immunity to Influenza A Virus.
PMID:28490583
ImmunoNodes - graphical development of complex immunoinformatics workflows.
PMID:28482806
CancerPDF: A repository of cancer-associated peptidome found in human biofluids.
PMID:28473704
BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes.
PMID:28472356
Pathogenic CD4+ T cells in patients with asthma.
PMID:28442213
NNAlign: a platform to construct and evaluate artificial neural network models of receptor-ligand interactions.
PMID:28407117
Computational Identification and Characterization of a Promiscuous T-Cell Epitope on the Extracellular Protein 85B of Mycobacterium spp. for Peptide-Based Subunit Vaccine Design.
PMID:28401156
The Bioinformatics Analysis of Comparative Genomics of Mycobacterium tuberculosis Complex (MTBC) Provides Insight into Dissimilarities between Intraspecific Groups Differing in Host Association, Virulence, and Epitope Diversity.
PMID:28377903
Proteomic analysis of protein purified derivative of Mycobacterium bovis.
PMID:28372590
The Influence of HIV on the Evolution of Mycobacterium tuberculosis.
PMID:28369607
Better living through ontologies at the Immune Epitope Database.
PMID:28365732
The Immune Epitope Database and Analysis Resource in Epitope Discovery and Synthetic Vaccine Design.
PMID:28352270
Antigen presentation profiling reveals recognition of lymphoma immunoglobulin neoantigens.
PMID:28329770
PSSMHCpan: a novel PSSM-based software for predicting class I peptide-HLA binding affinity.
PMID:28327987
Recent advances in Major Histocompatibility Complex (MHC) class I antigen presentation: Plastic MHC molecules and TAPBPR-mediated quality control.
PMID:28299193
Omics Approaches for the Study of Adaptive Immunity to Staphylococcus aureus and the Selection of Vaccine Candidates.
PMID:28248221
Immunogenicity of a Multi-Epitope DNA Vaccine Encoding Epitopes from Cu-Zn Superoxide Dismutase and Open Reading Frames of Brucella abortus in Mice.
PMID:28232837
Mass Spectrometry Profiling of HLA-Associated Peptidomes in Mono-allelic Cells Enables More Accurate Epitope Prediction.
PMID:28228285
Identification of the core regulators of the HLA I-peptide binding process.
PMID:28211542
Computer-aided designing of immunosuppressive peptides based on IL-10 inducing potential.
PMID:28211521
Unconventional Peptide Presentation by Major Histocompatibility Complex (MHC) Class I Allele HLA-A*02:01: BREAKING CONFINEMENT.
PMID:28179428
ATLAS: A database linking binding affinities with structures for wild-type and mutant TCR-pMHC complexes.
PMID:28160322
Patterns of Cellular Immunity Associated with Experimental Infection with rDEN2Δ30 (Tonga/74) Support Its Suitability as a Human Dengue Virus Challenge Strain.
PMID:28148797
Evidence of an Antimicrobial Peptide Signature Encrypted in HECT E3 Ubiquitin Ligases.
PMID:28119686
ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping.
PMID:28095436
A Bioinformatics Practicum to Develop Student Understanding of Immunological Rejection of Protein Drugs.
PMID:28090096
Definition of Human Epitopes Recognized in Tetanus Toxoid and Development of an Assay Strategy to Detect Ex Vivo Tetanus CD4+ T Cell Responses.
PMID:28081174
Mycobacterium tuberculosis Complex Exhibits Lineage-Specific Variations Affecting Protein Ductility and Epitope Recognition.
PMID:28062754
Transcriptomic analysis of human norovirus NS1-2 protein highlights a multifunctional role in murine monocytes.
PMID:28056773
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes.
PMID:28053160
Identifying Candidate Targets of Immune Responses in Zika Virus Based on Homology to Epitopes in Other Flavivirus Species.
PMID:28018746
Immunodominance in allergic T-cell reactivity to Japanese cedar in different geographic cohorts.
PMID:27979027
Tolerance checkpoint bypass permits emergence of pathogenic T cells to neuromyelitis optica autoantigen aquaporin-4.
PMID:27940915
Screening and Identification of an H-2Kb-Restricted CTL Epitope within the Glycoprotein of Hantaan Virus.
PMID:27933274
In silico Identification of Potential Peptides or Allergen Shot Candidates Against Aspergillus fumigatus.
PMID:27872794
Immunoinformatics Approach in Designing Epitope-based Vaccine Against Meningitis-inducing Bacteria (Streptococcus pneumoniae, Neisseria meningitidis, and Haemophilus influenzae Type b).
PMID:27812281
Role of HLA-DP in the Presentation of Epitopes from the Truncated Bacterial PE38 Immunotoxin.
PMID:27796910
Immunoproteomic analysis of house dust mite antigens reveals distinct classes of dominant T cell antigens according to function and serological reactivity.
PMID:27684489
Current tools for predicting cancer-specific T cell immunity.
PMID:27622028
A computational docking study on the pH dependence of peptide binding to HLA-B27 sub-types differentially associated with ankylosing spondylitis.
PMID:27506766
HLA-DRB1 Alleles Are Associated With Different Magnitudes of Dengue Virus-Specific CD4+ T-Cell Responses.
PMID:27443615
Analysis of Major Histocompatibility Complex-Bound HIV Peptides Identified from Various Cell Types Reveals Common Nested Peptides and Novel T Cell Responses.
PMID:27440904
A Quantitative Analysis of Complexity of Human Pathogen-Specific CD4 T Cell Responses in Healthy M. tuberculosis Infected South Africans.
PMID:27409590
Computational genomics tools for dissecting tumour-immune cell interactions.
PMID:27376489
Chemical Modification of Influenza CD8+ T-Cell Epitopes Enhances Their Immunogenicity Regardless of Immunodominance.
PMID:27333291
Design and engineering of deimmunized biotherapeutics.
PMID:27322891
HLAsupE: an integrated database of HLA supertype-specific epitopes to aid in the development of vaccines with broad coverage of the human population.
PMID:27307005
Literature information in PubChem: associations between PubChem records and scientific articles.
PMID:27293485
Expressing Redundancy among Linear-Epitope Sequence Data Based on Residue-Level Physicochemical Similarity in the Context of Antigenic Cross-Reaction.
PMID:27274725
Evaluation of the immunogenicity and protective effects of a trivalent chimeric norovirus P particle immunogen displaying influenza HA2 from subtypes H1, H3 and B.
PMID:27222326
Th1 versus Th2 T cell polarization by whole-cell and acellular childhood pertussis vaccines persists upon re-immunization in adolescence and adulthood.
PMID:27212461
Putative virulence factors of Corynebacterium pseudotuberculosis FRC41: vaccine potential and protein expression.
PMID:27184574
Dual B- and T-cell de-immunization of recombinant immunotoxin targeting mesothelin with high cytotoxic activity.
PMID:27167198
FRED 2: an immunoinformatics framework for Python.
PMID:27153717
The Ontology for Biomedical Investigations.
PMID:27128319
The omic approach to parasitic trematode research-a review of techniques and developments within the past 5 years.
PMID:27126082
A web-based resource for designing therapeutics against Ebola Virus.
PMID:27113850
Analyzing the effect of peptide-HLA-binding ability on the immunogenicity of potential CD8+ and CD4+ T cell epitopes in a large dataset.
PMID:27094547
Designing therapeutic cancer vaccines by mimicking viral infections.
PMID:27052572
NetMHCpan-3.0; improved prediction of binding to MHC class I molecules integrating information from multiple receptor and peptide length datasets.
PMID:27029192
HIV Protease Inhibitor-Induced Cathepsin Modulation Alters Antigen Processing and Cross-Presentation.
PMID:27009491
Promiscuous Recognition of a Trypanosoma cruzi CD8+ T Cell Epitope among HLA-A2, HLA-A24 and HLA-A1 Supertypes in Chagasic Patients.
PMID:26974162
Comprehensive genomic analysis of malignant pleural mesothelioma identifies recurrent mutations, gene fusions and splicing alterations.
PMID:26928227
The Role of Neoantigens in Naturally Occurring and Therapeutically Induced Immune Responses to Cancer.
PMID:26922999
Prospective identification of neoantigen-specific lymphocytes in the peripheral blood of melanoma patients.
PMID:26901407
High-Density Peptide Microarray Analysis of IgG Autoantibody Reactivities in Serum and Cerebrospinal Fluid of Multiple Sclerosis Patients.
PMID:26831522
pVAC-Seq: A genome-guided in silico approach to identifying tumor neoantigens.
PMID:26825632
The Length Distribution of Class I-Restricted T Cell Epitopes Is Determined by Both Peptide Supply and MHC Allele-Specific Binding Preference.
PMID:26783342
An ontology for major histocompatibility restriction.
PMID:26759709
Reproducibility and conflicts in immune epitope data.
PMID:26678806
DockTope: a Web-based tool for automated pMHC-I modelling.
PMID:26674250
Population tailored modification of tuberculosis specific interferon-gamma release assay.
PMID:26632326
Immune Responses in Acute and Convalescent Patients with Mild, Moderate and Severe Disease during the 2009 Influenza Pandemic in Norway.
PMID:26606759
EPIPOX: Immunoinformatic Characterization of the Shared T-Cell Epitome between Variola Virus and Related Pathogenic Orthopoxviruses.
PMID:26605344
Lynx: a knowledge base and an analytical workbench for integrative medicine.
PMID:26590263
Immunoinformatics and epitope prediction in the age of genomic medicine.
PMID:26589500
Automatic Generation of Validated Specific Epitope Sets.
PMID:26568965
SATPdb: a database of structurally annotated therapeutic peptides.
PMID:26527728
Gapped sequence alignment using artificial neural networks: application to the MHC class I system.
PMID:26515819
BDB: biopanning data bank.
PMID:26503249
Rapid isolation of dengue-neutralizing antibodies from single cell-sorted human antigen-specific memory B-cell cultures.
PMID:26491897
Elimination of murine and human T-cell epitopes in recombinant immunotoxin eliminates neutralizing and anti-drug antibodies in vivo.
PMID:26477977
Accurate pan-specific prediction of peptide-MHC class II binding affinity with improved binding core identification.
PMID:26416257
Common Amino Acid Subsequences in a Universal Proteome--Relevance for Food Science.
PMID:26340620
Positive Selection in CD8+ T-Cell Epitopes of Influenza Virus Nucleoprotein Revealed by a Comparative Analysis of Human and Swine Viral Lineages.
PMID:26311880
Mechanism of Binding to Ebola Virus Glycoprotein by the ZMapp, ZMAb, and MB-003 Cocktail Antibodies.
PMID:26311869
Tumor neoantigens: building a framework for personalized cancer immunotherapy.
PMID:26258412
Epitopemap: a web application for integrated whole proteome epitope prediction.
PMID:26169908
iVAX: An integrated toolkit for the selection and optimization of antigens and the design of epitope-driven vaccines.
PMID:26155959
The Disease Ontology: fostering interoperability between biological and clinical human disease-related data.
PMID:26093607
Generation and Identification of Peptide-Based Monoclonal Antibodies Against Vacuolar Proton Pyrophosphatase of Toxoplasma gondii.
PMID:26090597
Development and validation of a broad scheme for prediction of HLA class II restricted T cell epitopes.
PMID:25862607
Characterization of the immunophenotypes and antigenomes of colorectal cancers reveals distinct tumor escape mechanisms and novel targets for immunotherapy.
PMID:25853550
Definition of a pool of epitopes that recapitulates the T cell reactivity against major house dust mite allergens.
PMID:25652035