Pathogen-Host Interaction Data integration and Analysis System
Names
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Pathogen-Host Interaction Data integration and Analysis System
metasource: Fairsharing.org
version: FAIRsharing.org: PHIDIAS; Pathogen-Host Interaction Data integration and Analysis System; DOI: https://doi.org/10.25504/FAIRsharing.YmkBZX; Last edited: Feb. 13, 2020, 2:19 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
PHIDIAS
metasource: Fairsharing.org
version: FAIRsharing.org: PHIDIAS; Pathogen-Host Interaction Data integration and Analysis System; DOI: https://doi.org/10.25504/FAIRsharing.YmkBZX; Last edited: Feb. 13, 2020, 2:19 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Names
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Pathogen-Host Interaction Data integration and Analysis System
metasource: Fairsharing.orgversion: FAIRsharing.org: PHIDIAS; Pathogen-Host Interaction Data integration and Analysis System; DOI: https://doi.org/10.25504/FAIRsharing.YmkBZX; Last edited: Feb. 13, 2020, 2:19 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
PHIDIAS
metasource: Fairsharing.orgversion: FAIRsharing.org: PHIDIAS; Pathogen-Host Interaction Data integration and Analysis System; DOI: https://doi.org/10.25504/FAIRsharing.YmkBZX; Last edited: Feb. 13, 2020, 2:19 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Names
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Pathogen-Host Interaction Data integration and Analysis System
metasource: Fairsharing.orgversion: FAIRsharing.org: PHIDIAS; Pathogen-Host Interaction Data integration and Analysis System; DOI: https://doi.org/10.25504/FAIRsharing.YmkBZX; Last edited: Feb. 13, 2020, 2:19 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
PHIDIAS
metasource: Fairsharing.orgversion: FAIRsharing.org: PHIDIAS; Pathogen-Host Interaction Data integration and Analysis System; DOI: https://doi.org/10.25504/FAIRsharing.YmkBZX; Last edited: Feb. 13, 2020, 2:19 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
PHIDIAS is a web-based database and analysis system that aims to manually curate, computationally analyze, and address different scientific issues in the areas of pathogen-host interactions (PHI, or called host-pathogen interactions or HPI). PHIDIAS has emphasized the study of those pathogens that cause various infectious diseases in humans and animals. The recently published Victors analysis program is a relatively independent system within the PHIDIAS database and analysis resource.
Description
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PHIDIAS is a web-based database and analysis system that aims to manually curate, computationally analyze, and address different scientific issues in the areas of pathogen-host interactions (PHI, or called host-pathogen interactions or HPI). PHIDIAS has emphasized the study of those pathogens that cause various infectious diseases in humans and animals. The recently published Victors analysis program is a relatively independent system within the PHIDIAS database and analysis resource.
metasource: Fairsharing.orgversion: FAIRsharing.org: PHIDIAS; Pathogen-Host Interaction Data integration and Analysis System; DOI: https://doi.org/10.25504/FAIRsharing.YmkBZX; Last edited: Feb. 13, 2020, 2:19 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Webpage:
http://www.phidias.us/index.phpWebpage
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http://www.phidias.us/index.php
metasource: Fairsharing.orgversion: FAIRsharing.org: PHIDIAS; Pathogen-Host Interaction Data integration and Analysis System; DOI: https://doi.org/10.25504/FAIRsharing.YmkBZX; Last edited: Feb. 13, 2020, 2:19 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Licence:
Name: PHIDIAS DisclaimerLicence name
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PHIDIAS Disclaimer
metasource: Fairsharing.orgversion: FAIRsharing.org: PHIDIAS; Pathogen-Host Interaction Data integration and Analysis System; DOI: https://doi.org/10.25504/FAIRsharing.YmkBZX; Last edited: Feb. 13, 2020, 2:19 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Licence URL
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http://www.phidias.us/disclaimer.php
metasource: Fairsharing.orgversion: FAIRsharing.org: PHIDIAS; Pathogen-Host Interaction Data integration and Analysis System; DOI: https://doi.org/10.25504/FAIRsharing.YmkBZX; Last edited: Feb. 13, 2020, 2:19 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications:
Publications
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PHIDIAS: a pathogen-host interaction data integration and analysis system
PMID: 17663773
metasource: Fairsharing.org
version: FAIRsharing.org: PHIDIAS; Pathogen-Host Interaction Data integration and Analysis System; DOI: https://doi.org/10.25504/FAIRsharing.YmkBZX; Last edited: Feb. 13, 2020, 2:19 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications
More detailed information about this field from each metasource.
PHIDIAS: a pathogen-host interaction data integration and analysis system
PMID: 17663773
metasource: Fairsharing.org
version: FAIRsharing.org: PHIDIAS; Pathogen-Host Interaction Data integration and Analysis System; DOI: https://doi.org/10.25504/FAIRsharing.YmkBZX; Last edited: Feb. 13, 2020, 2:19 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
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PHIDIAS: a pathogen-host interaction data integration and analysis system
PubMed citations: 38.
38 articles citing: PHIDIAS: a pathogen-host interaction data integration and analysis system
PHILM2Web: A high-throughput database of macromolecular host-pathogen interactions on the Web. PMID:35776535
Mining the Flavoproteome of Brucella ovis, the Brucellosis Causing Agent in Ovis aries. PMID:35315701
Methanobacterium formicicum as a target rumen methanogen for the development of new methane mitigation interventions: A review. PMID:32734058
Identification and characterization of putative Aeromonas spp. T3SS effectors. PMID:31163020
Cyberbiosecurity Challenges of Pathogen Genome Databases. PMID:31157218
Comparative genomics analysis to differentiate metabolic and virulence gene potential in gastric versus enterohepatic Helicobacter species. PMID:30458713
Victors: a web-based knowledge base of virulence factors in human and animal pathogens. PMID:30365026
Interface-Based Structural Prediction of Novel Host-Pathogen Interactions. PMID:30298406
Protein-protein interactions of human viruses. PMID:30031213
Structural host-microbiota interaction networks. PMID:29023448
Systemic Approach to Virulence Gene Network Analysis for Gaining New Insight into Cryptococcal Virulence. PMID:27833589
A review on host-pathogen interactions: classification and prediction. PMID:27470504
Literature Mining and Ontology based Analysis of Host-Brucella Gene-Gene Interaction Network. PMID:26696993
Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database. PMID:26578582
SugarBindDB, a resource of glycan-mediated host-pathogen interactions. PMID:26578555
Ontology-based representation and analysis of host-Brucella interactions. PMID:26445639
Integrated inference and evaluation of host-fungi interaction networks. PMID:26300851
RNA-seq reveals the critical role of OtpR in regulating Brucella melitensis metabolism and virulence under acidic stress. PMID:26242322
A review on computational systems biology of pathogen-host interactions. PMID:25914674
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. PMID:25666585
Network representations of immune system complexity. PMID:25625853
Interrogation of the Burkholderia pseudomallei genome to address differential virulence among isolates. PMID:25536074
The Pathogen-Host Interactions database (PHI-base): additions and future developments. PMID:25414340
Identification and functional analysis of AG1-IA specific genes of Rhizoctonia solani. PMID:25070039
A genome-wide MeSH-based literature mining system predicts implicit gene-to-gene relationships and networks. PMID:24555475
High-throughput RNA interference screens integrative analysis: Towards a comprehensive understanding of the virus-host interplay. PMID:24175227
HoPaCI-DB: host-Pseudomonas and Coxiella interaction database. PMID:24137008
Brucellosis Ontology (IDOBRU) as an extension of the Infectious Disease Ontology. PMID:22041276
Ontology-based Brucella vaccine literature indexing and systematic analysis of gene-vaccine association network. PMID:21871085
A review of Brucella infection in marine mammals, with special emphasis on Brucella pinnipedialis in the hooded seal (Cystophora cristata). PMID:21819589
Integration and visualization of host-pathogen data related to infectious diseases. PMID:21712250
BiologicalNetworks--tools enabling the integration of multi-scale data for the host-pathogen studies. PMID:21235794
Protegen: a web-based protective antigen database and analysis system. PMID:20959289
Bioinformatics analysis of Brucella vaccines and vaccine targets using VIOLIN. PMID:20875156
Literature-based discovery of IFN-gamma and vaccine-mediated gene interaction networks. PMID:20625487
Data integration for dynamic and sustainable systems biology resources: challenges and lessons learned. PMID:20491070
A PubMed-wide associational study of infectious diseases. PMID:20224767
VIOLIN: vaccine investigation and online information network. PMID:18025042
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Tags
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curated information
metasource: Fairsharing.org
version: FAIRsharing.org: PHIDIAS; Pathogen-Host Interaction Data integration and Analysis System; DOI: https://doi.org/10.25504/FAIRsharing.YmkBZX; Last edited: Feb. 13, 2020, 2:19 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
host
metasource: Fairsharing.org
version: FAIRsharing.org: PHIDIAS; Pathogen-Host Interaction Data integration and Analysis System; DOI: https://doi.org/10.25504/FAIRsharing.YmkBZX; Last edited: Feb. 13, 2020, 2:19 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
infection
metasource: Fairsharing.org
version: FAIRsharing.org: PHIDIAS; Pathogen-Host Interaction Data integration and Analysis System; DOI: https://doi.org/10.25504/FAIRsharing.YmkBZX; Last edited: Feb. 13, 2020, 2:19 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
pathogen
metasource: Fairsharing.org
version: FAIRsharing.org: PHIDIAS; Pathogen-Host Interaction Data integration and Analysis System; DOI: https://doi.org/10.25504/FAIRsharing.YmkBZX; Last edited: Feb. 13, 2020, 2:19 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Tags
More detailed information about this field from each metasource.
curated information
metasource: Fairsharing.orgversion: FAIRsharing.org: PHIDIAS; Pathogen-Host Interaction Data integration and Analysis System; DOI: https://doi.org/10.25504/FAIRsharing.YmkBZX; Last edited: Feb. 13, 2020, 2:19 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
host
metasource: Fairsharing.orgversion: FAIRsharing.org: PHIDIAS; Pathogen-Host Interaction Data integration and Analysis System; DOI: https://doi.org/10.25504/FAIRsharing.YmkBZX; Last edited: Feb. 13, 2020, 2:19 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
infection
metasource: Fairsharing.orgversion: FAIRsharing.org: PHIDIAS; Pathogen-Host Interaction Data integration and Analysis System; DOI: https://doi.org/10.25504/FAIRsharing.YmkBZX; Last edited: Feb. 13, 2020, 2:19 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
pathogen
metasource: Fairsharing.orgversion: FAIRsharing.org: PHIDIAS; Pathogen-Host Interaction Data integration and Analysis System; DOI: https://doi.org/10.25504/FAIRsharing.YmkBZX; Last edited: Feb. 13, 2020, 2:19 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
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