R3S61C last accessed: 2022-11-04

Other names: NCBI Influenza Virus Resource, Influenza Virus Database, NCBI Flu

Influenza Virus Resource presents data obtained from the NIAID Influenza Genome Sequencing Project as well as from GenBank, combined with tools for flu sequence analysis, annotation and submission to GenBank. In addition, it provides links to other resources that contain flu sequences, publications and general information about flu viruses.

Webpage:

https://www.ncbi.nlm.nih.gov/genomes/FLU/Database/nph-select.cgi?go=database

Licence:

Name: NCBI Data Policies and Disclaimer
URL: http://www.ncbi.nlm.nih.gov/home/about/policies.shtml

Publications:

Publications
More detailed information about this field from each metasource.

The influenza virus resource at the National Center for Biotechnology Information
PMID: 17942553
metasource: Fairsharing.org
version: FAIRsharing.org: Influenza Virus Resource; Influenza Virus Resource; DOI: https://doi.org/10.25504/FAIRsharing.13cdzp; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:05 p.m.

The influenza virus resource at the National Center for Biotechnology Information PubMed citations: 499.

499 articles citing: The influenza virus resource at the National Center for Biotechnology Information

Human pathogenic RNA viruses establish noncompeting lineages by occupying independent niches. PMID:35639694
T Cell Epitope Discovery in the Context of Distinct and Unique Indigenous HLA Profiles. PMID:35603215
New substitutions on NS1 protein from influenza A (H1N1) virus: Bioinformatics analyses of Indian strains isolated from 2009 to 2020. PMID:35509388
Novel Low Pathogenic Avian Influenza H6N1 in Backyard Chicken in Easter Island (Rapa Nui), Chilean Polynesia. PMID:35458448
A Coarse-Grained Model of Affinity Maturation Indicates the Importance of B-Cell Receptor Avidity in Epitope Subdominance. PMID:35371013
Sequence Matching between Hemagglutinin and Neuraminidase through Sequence Analysis Using Machine Learning. PMID:35336876
Designing sensitive viral diagnostics with machine learning. PMID:35241837
Librator: a platform for the optimized analysis, design, and expression of mutable influenza viral antigens. PMID:35183062
Sheet, Surveillance, Strategy, Salvage and Shield in global biodefense system to protect the public health and tackle the incoming pandemics. PMID:35093353
DeLUCS: Deep learning for unsupervised clustering of DNA sequences. PMID:35061715
Evolution of influenza A virus in intensive and free-range swine farms in Spain. PMID:35039784
Nuclear magnetic resonance reveals a two hairpin equilibrium near the 3'-splice site of influenza A segment 7 mRNA that can be shifted by oligonucleotides. PMID:34983822
Characterizing the Core Internal Gene Pool of H9N2 Responsible for Continuous Reassortment With Other Influenza A Viruses. PMID:34975784
PCR Primer Design for the Rapidly Evolving SARS-CoV-2 Genome. PMID:34773624
Discriminating Clonotypes of Influenza A Virus Genes by Nanopore Sequencing. PMID:34576230
Influenza virus genotype to phenotype predictions through machine learning: a systematic review. PMID:34498543
Identification of the 5'-Terminal Packaging Signal of the H1N1 Influenza A Virus Neuraminidase Segment at Single-Nucleotide Resolution. PMID:34456891
Conserved Sequence Analysis of Influenza A Virus HA Segment and Its Application in Rapid Typing. PMID:34441263
A novel mechanism of enhanced transcription activity and fidelity for influenza A viral RNA-dependent RNA polymerase. PMID:34379778
Conserved Structural Motifs of Two Distant IAV Subtypes in Genomic Segment 5 RNA. PMID:33810157
Inference of population genetic parameters from an irregular time series of seasonal influenza virus sequences. PMID:33724414
An immune epigenetic insight to COVID-19 infection. PMID:33685230
Modeling the Influenza A NP-vRNA-Polymerase Complex in Atomic Detail. PMID:33477938
A universal RT-qPCR assay for "One Health" detection of influenza A viruses. PMID:33471840
Method comparison of targeted influenza A virus typing and whole-genome sequencing from respiratory specimens of companion animals. PMID:33234046
Dominant subtype switch in avian influenza viruses during 2016-2019 in China. PMID:33219213
Influenza A Viruses in Ruddy Turnstones (Arenaria interpres); Connecting Wintering and Migratory Sites with an Ecological Hotspot at Delaware Bay. PMID:33105913
Natural and Experimental Persistence of Highly Pathogenic H5 Influenza Viruses in Slurry of Domestic Ducks, with or without Lime Treatment. PMID:33008818
A Heterogeneous Swine Show Circuit Drives Zoonotic Transmission of Influenza A Viruses in the United States. PMID:32999022
The Genome Sequence of an H6N5 Influenza A Virus Strain Isolated from a Northern Pintail (Anas acuta) Sampled in Alaska, USA, Shares High Identity with That of a South Korean Wild Bird Strain. PMID:32817149
Ecological factors associated with persistent circulation of multiple highly pathogenic avian influenza viruses among poultry farms in Taiwan during 2015-17. PMID:32790744
Distinct miRNA Profile of Cellular and Extracellular Vesicles Released from Chicken Tracheal Cells Following Avian Influenza Virus Infection. PMID:32764349
Antigenicity prediction and vaccine recommendation of human influenza virus A (H3N2) using convolutional neural networks. PMID:32750260
N-Linked Glycan Sites on the Influenza A Virus Neuraminidase Head Domain Are Required for Efficient Viral Incorporation and Replication. PMID:32699088
FluConvert and IniFlu: a suite of integrated software to identify novel signatures of emerging influenza viruses with increasing risk. PMID:32682392
A benchmark dataset of protein antigens for antigenicity measurement. PMID:32632108
Sequence Compression Benchmark (SCB) database-A comprehensive evaluation of reference-free compressors for FASTA-formatted sequences. PMID:32627830
Multi-task learning sparse group lasso: a method for quantifying antigenicity of influenza A(H1N1) virus using mutations and variations in glycosylation of Hemagglutinin. PMID:32393178
Animal Disease Surveillance in the 21st Century: Applications and Robustness of Phylodynamic Methods in Recent U.S. Human-Like H3 Swine Influenza Outbreaks. PMID:32373634
Analyzing the interaction of a herbal compound Andrographolide from Andrographis paniculata as a folklore against swine flu (H1N1). PMID:32289026
Segmentation of DNA using simple recurrent neural network. PMID:32288315
Manifold construction based on local distance invariance. PMID:32218874
Bioinformatics design and experimental validation of influenza A virus multi-epitopes that induce neutralizing antibodies. PMID:32060794
Multi-state design of flexible proteins predicts sequences optimal for conformational change. PMID:32032348
HopPER: an adaptive model for probability estimation of influenza reassortment through host prediction. PMID:31973709
Field-based method for assessing duration of infectivity for influenza A viruses in the environment. PMID:31923446
Rule-based meta-analysis reveals the major role of PB2 in influencing influenza A virus virulence in mice. PMID:31874643
Changes in RNA secondary structure affect NS1 protein expression during early stage influenza virus infection. PMID:31864377
Estimating Transmission Potential of H5N1 Viruses Among Humans in Egypt Using Phylogeny, Genetic Distance and Sampling Time Interval. PMID:31849902
Structural Basis of Protection against H7N9 Influenza Virus by Human Anti-N9 Neuraminidase Antibodies. PMID:31757767
Influenza classification from short reads with VAPOR facilitates robust mapping pipelines and zoonotic strain detection for routine surveillance applications. PMID:31693070
ChromaClade: combined visualisation of phylogenetic and sequence data. PMID:31615393
Evolutionary, genetic, structural characterization and its functional implications for the influenza A (H1N1) infection outbreak in India from 2009 to 2017. PMID:31604969
Conserved structural RNA domains in regions coding for cleavage site motifs in hemagglutinin genes of influenza viruses. PMID:31456885
Highly conserved influenza T cell epitopes induce broadly protective immunity. PMID:31331771
Predicting Antigenicity of Influenza A Viruses Using biophysical ideas. PMID:31308446
A Global Perspective on H9N2 Avian Influenza Virus. PMID:31284485
Diversity and distribution of type A influenza viruses: an updated panorama analysis based on protein sequences. PMID:31242907
Identifying genetic determinants of complex phenotypes from whole genome sequence data. PMID:31182025
A Site of Vulnerability on the Influenza Virus Hemagglutinin Head Domain Trimer Interface. PMID:31100268
A brief history of bird flu. PMID:31056053
Mutational load causes stochastic evolutionary outcomes in acute RNA viral infection. PMID:31024738
Continuing evolution of highly pathogenic H5N1 viruses in Bangladeshi live poultry markets. PMID:31014196
Structures and functions linked to genome-wide adaptation of human influenza A viruses. PMID:31000776
Low pathogenic avian influenza (H7N6) virus causing an outbreak in commercial Turkey farms in Chile. PMID:30924394
Evidence of exposure and human seroconversion during an outbreak of avian influenza A(H5N1) among poultry in Cameroon. PMID:30866772
Secondary structure of the segment 5 genomic RNA of influenza A virus and its application for designing antisense oligonucleotides. PMID:30846846
A Dose-finding Study of a Wild-type Influenza A(H3N2) Virus in a Healthy Volunteer Human Challenge Model. PMID:30770534
In silico re-assessment of a diagnostic RT-qPCR assay for universal detection of Influenza A viruses. PMID:30733500
Human-Origin Influenza A(H3N2) Reassortant Viruses in Swine, Southeast Mexico. PMID:30730827
Phylogenomic Pipeline Validation for Foodborne Pathogen Disease Surveillance. PMID:30728194
Effect of strain-specific maternally-derived antibodies on influenza A virus infection dynamics in nursery pigs. PMID:30640929
Detection of neuraminidase inhibitor-resistant influenza A (H1N1)pdm09 viruses obtained from influenza surveillance in Indonesia. PMID:30574303
Broadened immunity against influenza by vaccination with computationally designed influenza virus N1 neuraminidase constructs. PMID:30510776
A Fréchet tree distance measure to compare phylogeographic spread paths across trees. PMID:30451977
Modeling site-specific amino-acid preferences deepens phylogenetic estimates of viral sequence divergence. PMID:30425841
ISU FLUture: a veterinary diagnostic laboratory web-based platform to monitor the temporal genetic patterns of Influenza A virus in swine. PMID:30382842
Eurasian Avian-Like Swine Influenza A Viruses Escape Human MxA Restriction through Distinct Mutations in Their Nucleoprotein. PMID:30355693
Evolutionary pathway for the 2017 emergence of a novel highly pathogenic avian influenza A(H7N9) virus among domestic poultry in Tennessee, United States. PMID:30236990
Deep Sequencing of H7N9 Influenza A Viruses from 16 Infected Patients from 2013 to 2015 in Shanghai Reveals Genetic Diversity and Antigenic Drift. PMID:30232169
Design and validation of a universal influenza virus enrichment probe set and its utility in deep sequence analysis of primary cloacal swab surveillance samples of wild birds. PMID:30212665
Genetic Evidence Supports Sporadic and Independent Introductions of Subtype H5 Low-Pathogenic Avian Influenza A Viruses from Wild Birds to Domestic Poultry in North America. PMID:30045988
A multifunctional human monoclonal neutralizing antibody that targets a unique conserved epitope on influenza HA. PMID:29991715
Unlocking pandemic potential: prevalence and spatial patterns of key substitutions in avian influenza H5N1 in Egyptian isolates. PMID:29980172
INSaFLU: an automated open web-based bioinformatics suite "from-reads" for influenza whole-genome-sequencing-based surveillance. PMID:29954441
Evolutionary Pattern and Large-Scale Architecture of Mutation Networks of 2009 A (H1N1) Influenza A Virus. PMID:29951084
Drawing on disorder: How viruses use histone mimicry to their advantage. PMID:29934321
Graph-guided multi-task sparse learning model: a method for identifying antigenic variants of influenza A(H3N2) virus. PMID:29878046
Emergence and Evolution of Novel Reassortant Influenza A Viruses in Canines in Southern China. PMID:29871917
Regional patterns of genetic diversity in swine influenza A viruses in the United States from 2010 to 2016. PMID:29624873
Influenza A virus recovery, diversity, and intercontinental exchange: A multi-year assessment of wild bird sampling at Izembek National Wildlife Refuge, Alaska. PMID:29621333
Amino Acid Substitutions HA A150V, PA A343T, and PB2 E627K Increase the Virulence of H5N6 Influenza Virus in Mice. PMID:29593694
Within-Host Evolution of Human Influenza Virus. PMID:29534854
When are pathogen genome sequences informative of transmission events? PMID:29420641
Phylogenetic Analysis and Characterization of a Sporadic Isolate of Equine Influenza A H3N8 from an Unvaccinated Horse in 2015. PMID:29324680
Sweep Dynamics (SD) plots: Computational identification of selective sweeps to monitor the adaptation of influenza A viruses. PMID:29321538
Genetic Characteristic and Global Transmission of Influenza A H9N2 Virus. PMID:29312274
Internal genes of a highly pathogenic H5N1 influenza virus determine high viral replication in myeloid cells and severe outcome of infection in mice. PMID:29300777
Genome-wide evolutionary dynamics of influenza B viruses on a global scale. PMID:29284042
Mammalian Adaptation of an Avian Influenza A Virus Involves Stepwise Changes in NS1. PMID:29237841
RNA2DMut: a web tool for the design and analysis of RNA structure mutations. PMID:29183923
Influenza virus segment 5 (+)RNA - secondary structure and new targets for antiviral strategies. PMID:29118447
Predictive Modeling of Influenza Shows the Promise of Applied Evolutionary Biology. PMID:29097090
Hydrogen Bond Variations of Influenza A Viruses During Adaptation in Human. PMID:29085020
Influenza Herd-Level Prevalence and Seasonality in Breed-to-Wean Pig Farms in the Midwestern United States. PMID:29075636
The emergence and evolution of influenza A (H1α) viruses in swine in Canada and the United States. PMID:29058649
Multiplex Reverse Transcription-PCR for Simultaneous Surveillance of Influenza A and B Viruses. PMID:28978683
Host proteostasis modulates influenza evolution. PMID:28949290
Viral outbreaks involve destabilized evolutionary networks: evidence from Ebola, Influenza and Zika. PMID:28928377
Time-series oligonucleotide count to assign antiviral siRNAs with long utility fit in the big data era. PMID:28905886
Surveillance for highly pathogenic influenza A viruses in California during 2014-2015 provides insights into viral evolutionary pathways and the spatiotemporal extent of viruses in the Pacific Americas Flyway. PMID:28874792
Structure-Guided Functional Annotation of the Influenza A Virus NS1 Protein Reveals Dynamic Evolution of the p85β-Binding Site during Circulation in Humans. PMID:28814525
Role of domestic ducks in the emergence of a new genotype of highly pathogenic H5N1 avian influenza A viruses in Bangladesh. PMID:28790460
The genomic evolution of H1 influenza A viruses from swine detected in the United States between 2009 and 2016. PMID:28758634
The role of nanotechnology in the treatment of viral infections. PMID:28748089
Predicting the host of influenza viruses based on the word vector. PMID:28729956
Genetic characterization of an H2N2 influenza virus isolated from a muskrat in Western Siberia. PMID:28690288
Evolution and Vaccination of Influenza Virus. PMID:28686463
Does influenza pandemic preparedness and mitigation require gain-of-function research? PMID:28502086
Predicting influenza antigenicity from Hemagglutintin sequence data based on a joint random forest method. PMID:28484283
Adaptation of avian influenza virus to a swine host. PMID:28458917
Use of AAScatterPlot tool for monitoring the evolution of the hemagglutinin cleavage site in H9 avian influenza viruses. PMID:28383669
K-Pax2: Bayesian identification of cluster-defining amino acid positions in large sequence datasets. PMID:28348810
Emerging highly pathogenic H5 avian influenza viruses in France during winter 2015/16: phylogenetic analyses and markers for zoonotic potential. PMID:28277218
Hybrid inorganic-organic capsules for efficient intracellular delivery of novel siRNAs against influenza A (H1N1) virus infection. PMID:28273907
Construction of Multilevel Structure for Avian Influenza Virus System Based on Granular Computing. PMID:28191464
A universal computational model for predicting antigenic variants of influenza A virus based on conserved antigenic structures. PMID:28165025
Whole-Genome Phylogenetic Analysis of Influenza B/Phuket/3073/2013-Like Viruses and Unique Reassortants Detected in Malaysia between 2012 and 2014. PMID:28129386
Rules of co-occurring mutations characterize the antigenic evolution of human influenza A/H3N2, A/H1N1 and B viruses. PMID:28117657
Swine Influenza Virus (H1N2) Characterization and Transmission in Ferrets, Chile. PMID:28098524
Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models. PMID:28095902
Quantifying predictors for the spatial diffusion of avian influenza virus in China. PMID:28086751
Tracking the Evolution of Polymerase Genes of Influenza A Viruses during Interspecies Transmission between Avian and Swine Hosts. PMID:28082971
Widespread Historical Contingency in Influenza Viruses. PMID:28049709
Frequency of influenza H3N2 intra-subtype reassortment: attributes and implications of reassortant spread. PMID:28034300
Avian H11 influenza virus isolated from domestic poultry in a Colombian live animal market. PMID:27924808
Virus Variation Resource - improved response to emergent viral outbreaks. PMID:27899678
Comparative studies of infectivity, immunogenicity and cross-protective efficacy of live attenuated influenza vaccines containing nucleoprotein from cold-adapted or wild-type influenza virus in a mouse model. PMID:27829176
Determination of antigenicity-altering patches on the major surface protein of human influenza A/H3N2 viruses. PMID:27774294
Sequence amplification via cell passaging creates spurious signals of positive adaptation in influenza virus H3N2 hemagglutinin. PMID:27713835
A Novel Bioinformatics Strategy to Analyze Microbial Big Sequence Data for Efficient Knowledge Discovery: Batch-Learning Self-Organizing Map (BLSOM). PMID:27694768
3DFlu: database of sequence and structural variability of the influenza hemagglutinin at population scale. PMID:27694207
Broad Spectrum Anti-Influenza Agents by Inhibiting Self-Association of Matrix Protein 1. PMID:27573445
Incorporating structure context of HA protein to improve antigenicity calculation for influenza virus A/H3N2. PMID:27498613
Role of the B Allele of Influenza A Virus Segment 8 in Setting Mammalian Host Range and Pathogenicity. PMID:27489273
Population genetic processes affecting the mode of selective sweeps and effective population size in influenza virus H3N2. PMID:27487769
Avian Influenza A Viruses: Evolution and Zoonotic Infection. PMID:27486732
Identification of combinatorial host-specific signatures with a potential to affect host adaptation in influenza A H1N1 and H3N2 subtypes. PMID:27473048
In Vivo Validation of Predicted and Conserved T Cell Epitopes in a Swine Influenza Model. PMID:27411061
Towards the knowledge-based design of universal influenza epitope ensemble vaccines. PMID:27402904
Computational and molecular analysis of conserved influenza A virus RNA secondary structures involved in infectious virion production. PMID:27399914
Origins of the 2009 H1N1 influenza pandemic in swine in Mexico. PMID:27350259
Antigenic Characterization of H3 Subtypes of Avian Influenza A Viruses from North America. PMID:27309078
The influenza A virus NS genome segment displays lineage-specific patterns in predicted RNA secondary structure. PMID:27206548
Vaccine Design for H5N1 Based on B- and T-cell Epitope Predictions. PMID:27147821
Human Sentinel Surveillance of Influenza and Other Respiratory Viral Pathogens in Border Areas of Western Cambodia. PMID:27028323
Cooperation between distinct viral variants promotes growth of H3N2 influenza in cell culture. PMID:26978794
H7N9 influenza virus neutralizing antibodies that possess few somatic mutations. PMID:26950424
Design and Characterization of a Computationally Optimized Broadly Reactive Hemagglutinin Vaccine for H1N1 Influenza Viruses. PMID:26912624
Intersubtype Reassortments of H5N1 Highly Pathogenic Avian Influenza Viruses Isolated from Quail. PMID:26900963
Limited Antigenic Diversity in Contemporary H7 Avian-Origin Influenza A Viruses from North America. PMID:26858078
Self-Folding of Naked Segment 8 Genomic RNA of Influenza A Virus. PMID:26848969
Genomic Signatures for Avian H7N9 Viruses Adapting to Humans. PMID:26845764
Predicting the Mutating Distribution at Antigenic Sites of the Influenza Virus. PMID:26837263
Circulation of influenza B lineages in northern Viet Nam, 2007-2014. PMID:26798557
The Genetic Diversity of Influenza A Viruses in Wild Birds in Peru. PMID:26784331
Coupling high-throughput genetics with phylogenetic information reveals an epistatic interaction on the influenza A virus M segment. PMID:26754751
Uracil-DNA glycosylase-treated reverse transcription loop-mediated isothermal amplification for rapid detection of avian influenza virus preventing carry-over contamination. PMID:26726027
Functional Genomics Reveals Linkers Critical for Influenza Virus Polymerase. PMID:26719244
Detection of Rare Drug Resistance Mutations by Digital PCR in a Human Influenza A Virus Model System and Clinical Samples. PMID:26659206
H1N1 Swine Influenza Viruses Differ from Avian Precursors by a Higher pH Optimum of Membrane Fusion. PMID:26608319
A Conserved Secondary Structural Element in the Coding Region of the Influenza A Virus Nucleoprotein (NP) mRNA Is Important for the Regulation of Viral Proliferation. PMID:26488402
Antigenic Patterns and Evolution of the Human Influenza A (H1N1) Virus. PMID:26412348
Role of Substitutions in the Hemagglutinin in the Emergence of the 1968 Pandemic Influenza Virus. PMID:26378170
Novel Human-like Influenza A Viruses Circulate in Swine in Mexico and Chile. PMID:26345598
Positive Selection in CD8+ T-Cell Epitopes of Influenza Virus Nucleoprotein Revealed by a Comparative Analysis of Human and Swine Viral Lineages. PMID:26311880
Coordinated Evolution of Influenza A Surface Proteins. PMID:26247472
Evolutionary Dynamics of Influenza A Viruses in US Exhibition Swine. PMID:26243317
Site-Specific Amino Acid Preferences Are Mostly Conserved in Two Closely Related Protein Homologs. PMID:26226986
A Novel Antiviral Target Structure Involved in the RNA Binding, Dimerization, and Nuclear Export Functions of the Influenza A Virus Nucleoprotein. PMID:26222066
Representing virus-host interactions and other multi-organism processes in the Gene Ontology. PMID:26215368
Molecular Epidemiology and Evolution of Influenza Viruses Circulating within European Swine between 2009 and 2013. PMID:26202246
Influenza A Viruses of Human Origin in Swine, Brazil. PMID:26196759
In silico discovery and modeling of non-coding RNA structure in viruses. PMID:26116541
A complete map of potential pathogenicity markers of avian influenza virus subtype H5 predicted from 11 expressed proteins. PMID:26112351
Avian influenza virus exhibits distinct evolutionary dynamics in wild birds and poultry. PMID:26111936
The Role of Human Transportation Networks in Mediating the Genetic Structure of Seasonal Influenza in the United States. PMID:26086273
Influenza A(H7N9) virus acquires resistance-related neuraminidase I222T substitution when infected mallards are exposed to low levels of oseltamivir in water. PMID:26077257
Avian influenza A H5N1 virus: a continuous threat to humans. PMID:26038430
Adaptive mutation in influenza A virus non-structural gene is linked to host switching and induces a novel protein by alternative splicing. PMID:26038410
Evidence for a Novel Mechanism of Influenza Virus-Induced Type I Interferon Expression by a Defective RNA-Encoded Protein. PMID:26024522
Influenza A virus on oceanic islands: host and viral diversity in seabirds in the Western Indian Ocean. PMID:25996394
Computational Identification of Antigenicity-Associated Sites in the Hemagglutinin Protein of A/H1N1 Seasonal Influenza Virus. PMID:25978416
The European and Japanese outbreaks of H5N8 derive from a single source population providing evidence for the dispersal along the long distance bird migratory flyways. PMID:25945320
MapMyFlu: visualizing spatio-temporal relationships between related influenza sequences. PMID:25940623
Rapid Emergence of Highly Pathogenic Avian Influenza Subtypes from a Subtype H5N1 Hemagglutinin Variant. PMID:25897518
Selecting vaccine strains for H3N2 human influenza A virus. PMID:25893173
Engineered self-assembling monolayers for label free detection of influenza nucleoprotein. PMID:25860669
Continual Reintroduction of Human Pandemic H1N1 Influenza A Viruses into Swine in the United States, 2009 to 2014. PMID:25833052
Global migration of influenza A viruses in swine. PMID:25813399
Characterization of influenza A (H7N9) viruses isolated from human cases imported into Taiwan. PMID:25748033
Cocktail of H5N1 COBRA HA vaccines elicit protective antibodies against H5N1 viruses from multiple clades. PMID:25671661
Circulation of the low pathogenic avian influenza subtype H5N2 virus in ducks at a live bird market in Ibadan, Nigeria. PMID:25671118
CISAPS: Complex Informational Spectrum for the Analysis of Protein Sequences. PMID:25632276
The avian-origin PB1 gene segment facilitated replication and transmissibility of the H3N2/1968 pandemic influenza virus. PMID:25631088
Influenza viruses with receptor-binding N1 neuraminidases occur sporadically in several lineages and show no attenuation in cell culture or mice. PMID:25609803
Cladograms with Path to Event (ClaPTE): a novel algorithm to detect associations between genotypes or phenotypes using phylogenies. PMID:25577610
Evaluating the accuracy and efficiency of multiple sequence alignment methods. PMID:25574120
Viral diversity and clonal evolution from unphased genomic data. PMID:25573168
Avian influenza at both ends of a migratory flyway: characterizing viral genomic diversity to optimize surveillance plans for North America. PMID:25567891
Reverse zoonosis of influenza to swine: new perspectives on the human-animal interface. PMID:25564096
Avian influenza H5N1 viral and bird migration networks in Asia. PMID:25535385
Characterization of a novel reassortant influenza A virus (H2N2) from a domestic duck in Eastern China. PMID:25533850
Phylogeography of Avian influenza A H9N2 in China. PMID:25511561
Computational analysis and mapping of novel open reading frames in influenza A viruses. PMID:25506939
Unraveling the web of viroinformatics: computational tools and databases in virus research. PMID:25428870
NCBI viral genomes resource. PMID:25428358
Integrating computational modeling and functional assays to decipher the structure-function relationship of influenza virus PB1 protein. PMID:25424584
H7N9 influenza A virus in turkeys in Minnesota. PMID:25351723
Appearance of L90I and N205S Mutations in Effector Domain of NS1 Gene of pdm (09) H1N1 Virus from India during 2009-2013. PMID:25309598
Honeysuckle-encoded atypical microRNA2911 directly targets influenza A viruses. PMID:25287280
Accumulation of human-adapting mutations during circulation of A(H1N1)pdm09 influenza virus in humans in the United Kingdom. PMID:25210166
RNA structural constraints in the evolution of the influenza A virus genome NP segment. PMID:25180940
Computational prediction of vaccine strains for human influenza A (H3N2) viruses. PMID:25122778
Comparative analysis of seven viral nuclear export signals (NESs) reveals the crucial role of nuclear export mediated by the third NES consensus sequence of nucleoprotein (NP) in influenza A virus replication. PMID:25119991
Development and clinical testing of a simple, low-density gel element array for influenza identification, subtyping, and H275Y detection. PMID:25066276
New insights into the nonconserved noncoding region of the subtype-determinant hemagglutinin and neuraminidase segments of influenza A viruses. PMID:25056889
Secondary structure of a conserved domain in an intron of influenza A M1 mRNA. PMID:25026548
The inherent mutational tolerance and antigenic evolvability of influenza hemagglutinin. PMID:25006036
Zoonotic infections with avian influenza A viruses and vaccine preparedness: a game of "mix and match". PMID:25003087
Introductions and evolution of human-origin seasonal influenza a viruses in multinational swine populations. PMID:24965467
The evolutionary dynamics of influenza A and B viruses in the tropical city of Managua, Nicaragua. PMID:24959982
Broad cross-reactive epitopes of the H5N1 influenza virus identified by murine antibodies against the A/Vietnam/1194/2004 hemagglutinin. PMID:24945805
Avian Influenza Virus with Hemagglutinin-Neuraminidase Combination H8N8, Isolated in Russia. PMID:24903874
The nuclear export protein of H5N1 influenza A viruses recruits Matrix 1 (M1) protein to the viral ribonucleoprotein to mediate nuclear export. PMID:24891509
An experimentally determined evolutionary model dramatically improves phylogenetic fit. PMID:24859245
Ethical alternatives to experiments with novel potential pandemic pathogens. PMID:24844931
Continuing reassortment leads to the genetic diversity of influenza virus H7N9 in Guangdong, China. PMID:24829356
Epistatically interacting substitutions are enriched during adaptive protein evolution. PMID:24811236
The "histone mimicry" by pathogens. PMID:24733380
Receptor mimicry by antibody F045-092 facilitates universal binding to the H3 subtype of influenza virus. PMID:24717798
Estimating the fitness advantage conferred by permissive neuraminidase mutations in recent oseltamivir-resistant A(H1N1)pdm09 influenza viruses. PMID:24699865
Influenza A H1N1 pandemic strain evolution--divergence and the potential for antigenic drift variants. PMID:24699432
Inferring influenza global transmission networks without complete phylogenetic information. PMID:24665342
Quantitative theory of entropic forces acting on constrained nucleotide sequences applied to viruses. PMID:24639520
Influenza virus drug resistance: a time-sampled population genetics perspective. PMID:24586206
A predictive fitness model for influenza. PMID:24572367
A synchronized global sweep of the internal genes of modern avian influenza virus. PMID:24531761
Substitutions near the hemagglutinin receptor-binding site determine the antigenic evolution of influenza A H3N2 viruses in U.S. swine. PMID:24522915
Universal influenza B virus genomic amplification facilitates sequencing, diagnostics, and reverse genetics. PMID:24501036
Genetic structure of avian influenza viruses from ducks of the Atlantic flyway of North America. PMID:24498009
Human infection with avian influenza A H6N1 virus: an epidemiological analysis. PMID:24461756
Intrasubtype reassortments cause adaptive amino acid replacements in H3N2 influenza genes. PMID:24415946
Identification of conserved RNA secondary structures at influenza B and C splice sites reveals similarities and differences between influenza A, B, and C. PMID:24405943
Influenza H7N9 and H9N2 viruses: coexistence in poultry linked to human H7N9 infection and genome characteristics. PMID:24403589
Phylodynamics of the emergence of influenza viruses after cross-species transmission. PMID:24358190
PhyloFlu, a DNA microarray for determining the phylogenetic origin of influenza A virus gene segments and the genomic fingerprint of viral strains. PMID:24353006
Predicting the emergence of H3N2 influenza viruses reveals contrasted modes of evolution of HA and NA antigens. PMID:24343641
Neuraminidase subtyping of avian influenza viruses with PrimerHunter-designed primers and quadruplicate primer pools. PMID:24312367
Virus Variation Resource--recent updates and future directions. PMID:24304891
Development and evaluation of a SYBR green-based real time RT-PCR assay for detection of the emerging avian influenza A (H7N9) virus. PMID:24278234
Large scale genome analysis shows that the epitopes for broadly cross-reactive antibodies are predominant in the pandemic 2009 influenza virus A H1N1 strain. PMID:24257096
Characterization of the noncoding regions of the 1918 influenza A H1N1 virus. PMID:24227852
Incorporation of a proteotyping approach using mass spectrometry for surveillance of influenza virus in cell-cultured strains. PMID:24226917
Population dynamics of cocirculating swine influenza A viruses in the United States from 2009 to 2012. PMID:24224819
Comparative dynamics and distribution of influenza drug resistance acquisition to protein m2 and neuraminidase inhibitors. PMID:24214415
Quantitative modeling of virus evolutionary dynamics and adaptation in serial passages using empirically inferred fitness landscapes. PMID:24198414
Survey of causative agents for acute respiratory infections among patients in Khartoum-State, Sudan, 2010-2011. PMID:24160894
Newly emerging mutations in the matrix genes of the human influenza A(H1N1)pdm09 and A(H3N2) viruses reduce the detection sensitivity of real-time reverse transcription-PCR. PMID:24153120
Emerging antigenic variants at the antigenic site Sb in pandemic A(H1N1)2009 influenza virus in Japan detected by a human monoclonal antibody. PMID:24147093
Evolution of the hemagglutinin protein of the new pandemic H1N1 influenza virus: maintaining optimal receptor binding by compensatory substitutions. PMID:24109242
Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza. PMID:24103105
A comprehensive map of the influenza A virus replication cycle. PMID:24088197
Molecular evolution of the hemagglutinin and neuraminidase genes of pandemic (H1N1) 2009 influenza viruses in Sendai, Japan, during 2009-2011. PMID:24078044
Structural basis for the divergent evolution of influenza B virus hemagglutinin. PMID:24074573
A mutant influenza virus that uses an N1 neuraminidase as the receptor-binding protein. PMID:24027333
Differing epidemiological dynamics of influenza B virus lineages in Guangzhou, southern China, 2009-2010. PMID:24027322
Antibody recognition of the pandemic H1N1 Influenza virus hemagglutinin receptor binding site. PMID:24027321
Secondary structure of a conserved domain in the intron of influenza A NS1 mRNA. PMID:24023714
Influenza a virus migration and persistence in North American wild birds. PMID:24009503
Novel bioinformatics strategies for prediction of directional sequence changes in influenza virus genomes and for surveillance of potentially hazardous strains. PMID:23964903
Influenza B virus has global ordered RNA structure in (+) and (-) strands but relatively less stable predicted RNA folding free energy than allowed by the encoded protein sequence. PMID:23958134
Resistance mutation R292K is induced in influenza A(H6N2) virus by exposure of infected mallards to low levels of oseltamivir. PMID:23951116
Molecular distribution of amino acid substitutions on neuraminidase from the 2009 (H1N1) human influenza pandemic virus. PMID:23930018
Towards a better understanding of the novel avian-origin H7N9 influenza A virus in China. PMID:23897131
The short stalk length of highly pathogenic avian influenza H5N1 virus neuraminidase limits transmission of pandemic H1N1 virus in ferrets. PMID:23864615
The effect of the PB2 mutation 627K on highly pathogenic H5N1 avian influenza virus is dependent on the virus lineage. PMID:23843645
Role of electrostatic repulsion in controlling pH-dependent conformational changes of viral fusion proteins. PMID:23823327
Using sequence data to infer the antigenicity of influenza virus. PMID:23820391
Role of the viral hemagglutinin in the anti-influenza virus activity of newly synthesized polycyclic amine compounds. PMID:23800838
Asparagine substitution at PB2 residue 701 enhances the replication, pathogenicity, and transmission of the 2009 pandemic H1N1 influenza A virus. PMID:23799150
HASP server: a database and structural visualization platform for comparative models of influenza A hemagglutinin proteins. PMID:23777206
Monitoring the antigenic evolution of human influenza A viruses to understand how and when viruses escape from existing immunity. PMID:23758844
Protein clustering and RNA phylogenetic reconstruction of the influenza A [corrected] virus NS1 protein allow an update in classification and identification of motif conservation. PMID:23667580
Antigenically intact hemagglutinin in circulating avian and swine influenza viruses and potential for H3N2 pandemic. PMID:23661027
Host restrictions of avian influenza viruses: in silico analysis of H13 and H16 specific signatures in the internal proteins. PMID:23646204
A perspective on multiple waves of influenza pandemics. PMID:23637746
Adaptation of avian influenza A virus polymerase in mammals to overcome the host species barrier. PMID:23616660
Mean protein evolutionary distance: a method for comparative protein evolution and its application. PMID:23613826
Pandemic influenza A viruses escape from restriction by human MxA through adaptive mutations in the nucleoprotein. PMID:23555271
Structure of a classical broadly neutralizing stem antibody in complex with a pandemic H2 influenza virus hemagglutinin. PMID:23552413
Detection of site-specific positive Darwinian selection on pandemic influenza A/H1N1 virus genome: integrative approaches. PMID:23529677
Lipid tail protrusion in simulations predicts fusogenic activity of influenza fusion peptide mutants and conformational models. PMID:23505359
Resampling nucleotide sequences with closest-neighbor trimming and its comparison to other methods. PMID:23460894
Highly pathogenic H5N1 influenza A virus strains provoke heterogeneous IFN-α/β responses that distinctively affect viral propagation in human cells. PMID:23451066
Evolutionary characterization of the pandemic H1N1/2009 influenza virus in humans based on non-structural genes. PMID:23418535
Importin α3/Qip1 is involved in multiplication of mutant influenza virus with alanine mutation at amino acid 9 independently of nuclear transport function. PMID:23383277
The evolutionary dynamics of receptor binding avidity in influenza A: a mathematical model for a new antigenic drift hypothesis. PMID:23382426
Quantifying pathogen surveillance using temporal genomic data. PMID:23362319
Components of selection in the evolution of the influenza virus: linkage effects beat inherent selection. PMID:23300444
Chinese and global distribution of H9 subtype avian influenza viruses. PMID:23285143
New approaches for unravelling reassortment pathways. PMID:23279962
Categorical spectral analysis of periodicity in human and viral genomes. PMID:23241388
Mixture model analysis reflecting dynamics of the population diversity of 2009 pandemic H1N1 influenza virus. PMID:23202424
High-throughput RNA sequencing of a formalin-fixed, paraffin-embedded autopsy lung tissue sample from the 1918 influenza pandemic. PMID:23180419
Systematic identification of H274Y compensatory mutations in influenza A virus neuraminidase by high-throughput screening. PMID:23152521
Pandemic influenza A virus codon usage revisited: biases, adaptation and implications for vaccine strain development. PMID:23134595
The evolutionary pattern of glycosylation sites in influenza virus (H5N1) hemagglutinin and neuraminidase. PMID:23133677
In silico biology of H1N1: molecular modelling of novel receptors and docking studies of inhibitors to reveal new insight in flu treatment. PMID:23125526
Sequential seasonal H1N1 influenza virus infections protect ferrets against novel 2009 H1N1 influenza virus. PMID:23115287
Investigation of influenza virus polymerase activity in pig cells. PMID:23077313
Phylogenetic properties of RNA viruses. PMID:23028645
Design of Escherichia coli-expressed stalk domain immunogens of H1N1 hemagglutinin that protect mice from lethal challenge. PMID:23015722
Genomic reassortment of influenza A virus in North American swine, 1998-2011. PMID:22993190
Cross-neutralization of influenza A viruses mediated by a single antibody loop. PMID:22982990
Estimating reassortment rates in co-circulating Eurasian swine influenza viruses. PMID:22971819
Epidemiological dynamics and phylogeography of influenza virus in southern China. PMID:22930808
FluShuffle and FluResort: new algorithms to identify reassorted strains of the influenza virus by mass spectrometry. PMID:22906155
Highly conserved protective epitopes on influenza B viruses. PMID:22878502
Routine use of microbial whole genome sequencing in diagnostic and public health microbiology. PMID:22876174
Clonal interference in the evolution of influenza. PMID:22851649
Compensatory evolution of net-charge in influenza A virus hemagglutinin. PMID:22808159
Evolutionary history and phylodynamics of influenza A and B neuraminidase (NA) genes inferred from large-scale sequence analyses. PMID:22808012
Global transmission of influenza viruses from humans to swine. PMID:22791604
Cross-lineage influenza B and heterologous influenza A antibody responses in vaccinated mice: immunologic interactions and B/Yamagata dominance. PMID:22745690
Airborne transmission of influenza A/H5N1 virus between ferrets. PMID:22723413
Two glycosylation sites in H5N1 influenza virus hemagglutinin that affect binding preference by computer-based analysis. PMID:22719948
Functional balance of the hemagglutinin and neuraminidase activities accompanies the emergence of the 2009 H1N1 influenza pandemic. PMID:22718832
Analysis by single-gene reassortment demonstrates that the 1918 influenza virus is functionally compatible with a low-pathogenicity avian influenza virus in mice. PMID:22718825
Evolution of novel reassortant A/H3N2 influenza viruses in North American swine and humans, 2009-2011. PMID:22696653
The 3' splice site of influenza A segment 7 mRNA can exist in two conformations: a pseudoknot and a hairpin. PMID:22685560
Subtype- and antigenic site-specific differences in biophysical influences on evolution of influenza virus hemagglutinin. PMID:22569196
Characteristics of a widespread community cluster of H275Y oseltamivir-resistant A(H1N1)pdm09 influenza in Australia. PMID:22561367
Influenza A virus coding regions exhibit host-specific global ordered RNA structure. PMID:22558296
Adaptive mutations in NEP compensate for defective H5N1 RNA replication in cultured human cells. PMID:22549831
Prospective of Genomics in Revealing Transmission, Reassortment and Evolution of Wildlife-Borne Avian Influenza A (H5N1) Viruses. PMID:22547954
Inference of genotype-phenotype relationships in the antigenic evolution of human influenza A (H3N2) viruses. PMID:22532796
Genetic analysis. PMID:22528162
Microfluidic chip for molecular amplification of influenza A RNA in human respiratory specimens. PMID:22457740
A computationally optimized hemagglutinin virus-like particle vaccine elicits broadly reactive antibodies that protect nonhuman primates from H5N1 infection. PMID:22448011
Mapping of H3N2 influenza antigenic evolution in China reveals a strategy for vaccine strain recommendation. PMID:22426230
Fatal cases of influenza A(H3N2) in children: insights from whole genome sequence analysis. PMID:22412998
PB1-F2 Finder: scanning influenza sequences for PB1-F2 encoding RNA segments. PMID:22373288
Prediction of biological functions on glycosylation site migrations in human influenza H1N1 viruses. PMID:22355413
Receptor-binding profiles of H7 subtype influenza viruses in different host species. PMID:22345462
Origin and fate of A/H1N1 influenza in Scotland during 2009. PMID:22337637
Inferring pandemic growth rates from sequence data. PMID:22337627
Avian influenza virus hemagglutinins H2, H4, H8, and H14 support a highly pathogenic phenotype. PMID:22308331
Evolution and adaptation of hemagglutinin gene of human H5N1 influenza virus. PMID:22286608
Improving global influenza surveillance: trends of A(H5N1) virus in Africa and Asia. PMID:22268987
Variability among the neuraminidase, non-structural 1 and PB1-F2 proteins in the influenza A virus genome. PMID:22261818
Influenza research database: an integrated bioinformatics resource for influenza research and surveillance. PMID:22260278
Is there a twelfth protein-coding gene in the genome of influenza A? A selection-based approach to the detection of overlapping genes in closely related sequences. PMID:22187135
Rohlin distance and the evolution of influenza A virus: weak attractors and precursors. PMID:22162994
Phylogenetic analysis of the non-structural (NS) gene of influenza A viruses isolated in Kazakhstan in 2002-2009. PMID:22160937
Does history repeat itself? Wavelets and the phylodynamics of influenza A. PMID:22160768
BFluenza: A Proteomic Database on Bird Flu. PMID:22125386
A novel ribozyme-based prophylaxis inhibits influenza A virus replication and protects from severe disease. PMID:22110627
Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans. PMID:22084096
Reassortment Networks and the evolution of pandemic H1N1 swine-origin influenza. PMID:22076498
Structural characterization of the hemagglutinin receptor specificity from the 2009 H1N1 influenza pandemic. PMID:22072785
Viral replication, persistence in water and genetic characterization of two influenza A viruses isolated from surface lake water. PMID:22028909
Gnarled-trunk evolutionary model of influenza A virus hemagglutinin. PMID:22028800
Amino acid changes in hemagglutinin contribute to the replication of oseltamivir-resistant H1N1 influenza viruses. PMID:22013054
Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds. PMID:22008513
A Closer Look at the NS1 of Influenza Virus. PMID:21994582
Pandemic A/H1N1/2009 influenza virus in swine, Cameroon, 2010. PMID:21963416
Environmental levels of the antiviral oseltamivir induce development of resistance mutation H274Y in influenza A/H1N1 virus in mallards. PMID:21931841
Mutations in the membrane-proximal region of the influenza A virus M2 protein cytoplasmic tail have modest effects on virus replication. PMID:21917980
Rapid PCR-based molecular pathotyping of H5 and H7 avian influenza viruses. PMID:21900520
Evolutionary pathways of the pandemic influenza A (H1N1) 2009 in the UK. PMID:21887318
Glycosylation site alteration in the evolution of influenza A (H1N1) viruses. PMID:21829533
Putative amino acid determinants of the emergence of the 2009 influenza A (H1N1) virus in the human population. PMID:21808039
A computational-experimental approach identifies mutations that enhance surface expression of an oseltamivir-resistant influenza neuraminidase. PMID:21799795
Reassortment events among swine influenza A viruses in China: implications for the origin of the 2009 influenza pandemic. PMID:21795347
Strength and tempo of selection revealed in viral gene genealogies. PMID:21787390
Evolutionary dynamics of influenza A nucleoprotein (NP) lineages revealed by large-scale sequence analyses. PMID:21763464
A highly conserved neutralizing epitope on group 2 influenza A viruses. PMID:21737702
Host shifts and molecular evolution of H7 avian influenza virus hemagglutinin. PMID:21711553
Extensive geographic mosaicism in avian influenza viruses from gulls in the northern hemisphere. PMID:21697989
Spatial dynamics of human-origin H1 influenza A virus in North American swine. PMID:21695237
PhyloMap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza A virus genome. PMID:21689434
Analysis of antigenically important residues in human influenza A virus in terms of B-cell epitopes. PMID:21680505
The influenza pandemic of 2009: lessons and implications. PMID:21623644
Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG). PMID:21597953
Adamantane- and oseltamivir-resistant seasonal A (H1N1) and pandemic A (H1N1) 2009 influenza viruses in Guangdong, China, during 2008 and 2009. PMID:21593267
Extensive geographical mixing of 2009 human H1N1 influenza A virus in a single university community. PMID:21593168
Identification of potential conserved RNA secondary structure throughout influenza A coding regions. PMID:21536710
A comprehensive benchmark study of multiple sequence alignment methods: current challenges and future perspectives. PMID:21483869
Reassortment and mutations associated with emergence and spread of oseltamivir-resistant seasonal influenza A/H1N1 viruses in 2005-2009. PMID:21483816
Genetic composition of contemporary swine influenza viruses in the West Central region of the United States of America. PMID:21477138
Genetic evidence for containment of viruses in the first outbreak of influenza A pandemic (H1N1) 2009 in Kobe, Japan. PMID:21477137
The nucleoprotein and matrix protein segments of H5N1 influenza viruses are responsible for dominance in embryonated eggs. PMID:21471324
Prediction of directional changes of influenza A virus genome sequences with emphasis on pandemic H1N1/09 as a model case. PMID:21444341
Genome-scale evolution and phylodynamics of equine H3N8 influenza A virus. PMID:21430049
Prevalence of epistasis in the evolution of influenza A surface proteins. PMID:21390205
Pandemic (H1N1) 2009 virus revisited: an evolutionary retrospective. PMID:21382522
Changed epitopes drive the antigenic drift for influenza A (H3N2) viruses. PMID:21342562
A computationally optimized broadly reactive antigen (COBRA) based H5N1 VLP vaccine elicits broadly reactive antibodies in mice and ferrets. PMID:21320540
Proteotyping to establish gene origin within reassortant influenza viruses. PMID:21305059
Identification of novel conserved functional motifs across most Influenza A viral strains. PMID:21272360
BiologicalNetworks--tools enabling the integration of multi-scale data for the host-pathogen studies. PMID:21235794
A complete analysis of HA and NA genes of influenza A viruses. PMID:21209922
Impact of antigenic and genetic drift on the serologic surveillance of H5N2 avian influenza viruses. PMID:21172021
Projection of seasonal influenza severity from sequence and serological data. PMID:21152078
Charting the host adaptation of influenza viruses. PMID:21109586
Avian influenza A (H9N2): computational molecular analysis and phylogenetic characterization of viral surface proteins isolated between 1997 and 2009 from the human population. PMID:21078137
Interspecific exchange of avian influenza virus genes in Alaska: the influence of trans-hemispheric migratory tendency and breeding ground sympatry. PMID:21073586
Phylogeography of the spring and fall waves of the H1N1/09 pandemic influenza virus in the United States. PMID:21068250
Origin of the 1918 pandemic H1N1 influenza A virus as studied by codon usage patterns and phylogenetic analysis. PMID:21068184
Genetic and phylogenetic analyses of influenza A H1N1pdm virus in Buenos Aires, Argentina. PMID:21047959
All that glitters is not gold--founder effects complicate associations of flu mutations to disease severity. PMID:21040570
Low-dimensional clustering detects incipient dominant influenza strain clusters. PMID:21036781
Analysis of synonymous codon usage bias in 09H1N1. PMID:20960179
Allele dynamics plots for the study of evolutionary dynamics in viral populations. PMID:20959296
Sporadic human cases of swine-origin influenza before 2009 share the Sa epitope. PMID:20930526
Evaluation of three influenza A and B real-time reverse transcription-PCR assays and a new 2009 H1N1 assay for detection of influenza viruses. PMID:20844230
CodonTest: modeling amino acid substitution preferences in coding sequences. PMID:20808876
Codon usage bias and the evolution of influenza A viruses. Codon Usage Biases of Influenza Virus. PMID:20723216
Real time reverse transcription (RRT)-polymerase chain reaction (PCR) methods for detection of pandemic (H1N1) 2009 influenza virus and European swine influenza A virus infections in pigs. PMID:20716157
Highly conserved cross-reactive CD4+ T-cell HA-epitopes of seasonal and the 2009 pandemic influenza viruses. PMID:20716156
Virulence determinants of avian H5N1 influenza A virus in mammalian and avian hosts: role of the C-terminal ESEV motif in the viral NS1 protein. PMID:20686040
Molecular analysis of H7 avian influenza viruses from Australia and New Zealand: genetic diversity and relationships from 1976 to 2007. PMID:20668069
Seroprevalence following the second wave of Pandemic 2009 H1N1 influenza in Pittsburgh, PA, USA. PMID:20644650
Protection from the 2009 H1N1 pandemic influenza by an antibody from combinatorial survivor-based libraries. PMID:20628565
OpenFluDB, a database for human and animal influenza virus. PMID:20624713
Influenza A virus polymerase: structural insights into replication and host adaptation mechanisms. PMID:20538599
A new common mutation in the hemagglutinin of the 2009 (H1N1) influenza A virus. PMID:20535229
Global migration dynamics underlie evolution and persistence of human influenza A (H3N2). PMID:20523898
FluTyper-an algorithm for automated typing and subtyping of the influenza virus from high resolution mass spectral data. PMID:20482883
FLU, an amino acid substitution model for influenza proteins. PMID:20384985
Cross-neutralization of 1918 and 2009 influenza viruses: role of glycans in viral evolution and vaccine design. PMID:20375007
Development and evaluation of a one-step real-time RT-PCR assay for universal detection of influenza A viruses from avian and mammal species. PMID:20229116
Development and preliminary evaluation of a rapid oligochromatographic assay for specific detection of new human influenza A H1N1 virus. PMID:20220170
Identification of host encoded microRNAs interacting with novel swine-origin influenza A (H1N1) virus and swine influenza virus. PMID:20198183
A real-time RT-PCR for detection of clade 1 and 2 H5N1 influenza A virus using locked nucleic acid (LNA) TaqMan probes. PMID:20170549
A novel electrochemical device to differentiate pandemic (H1N1) 2009 from seasonal influenza. PMID:20167047
Genetic makeup of amantadine-resistant and oseltamivir-resistant human influenza A/H1N1 viruses. PMID:20129961
Human genomics and preparedness for infectious threats. PMID:20090897
Evolutionary genetics of human enterovirus 71: origin, population dynamics, natural selection, and seasonal periodicity of the VP1 gene. PMID:20089660
The early diversification of influenza A/H1N1pdm. PMID:20029664
Next generation syndromic surveillance: molecular epidemiology, electronic health records and the pandemic Influenza A (H1N1) virus. PMID:20025193
Structure, receptor binding, and antigenicity of influenza virus hemagglutinins from the 1957 H2N2 pandemic. PMID:20007271
Modeling gene sequences over time in 2009 H1N1 influenza A virus populations. PMID:19961611
Pre-existing immunity against swine-origin H1N1 influenza viruses in the general human population. PMID:19918065
Evidence for a novel gene associated with human influenza A viruses. PMID:19917120
Identifying changes in selective constraints: host shifts in influenza. PMID:19911053
Inhibition of neuraminidase inhibitor-resistant influenza virus by DAS181, a novel sialidase fusion protein. PMID:19893749
Evolutionary fingerprinting of genes. PMID:19864470
The role of genomics in tracking the evolution of influenza A virus. PMID:19855818
Reassortment patterns in Swine influenza viruses. PMID:19809504
Panorama phylogenetic diversity and distribution of type A influenza viruses based on their six internal gene sequences. PMID:19737421
Differences in patient age distribution between influenza A subtypes. PMID:19718262
Avian influenza virus, Streptococcus suis serotype 2, severe acute respiratory syndrome-coronavirus and beyond: molecular epidemiology, ecology and the situation in China. PMID:19687041
Large-scale sequence analysis of M gene of influenza A viruses from different species: mechanisms for emergence and spread of amantadine resistance. PMID:19651904
Validated RealTime reverse transcriptase PCR methods for the diagnosis and pathotyping of Eurasian H7 avian influenza viruses. PMID:19627372
Detection of mammalian virulence determinants in highly pathogenic avian influenza H5N1 viruses: multivariate analysis of published data. PMID:19625397
T-cell tolerance for variability in an HLA class I-presented influenza A virus epitope. PMID:19553306
What are the prospects for controlling hepatitis C? PMID:19529757
Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic. PMID:19516283
Gene flow and competitive exclusion of avian influenza A virus in natural reservoir hosts. PMID:19501380
Evolution of the M gene of the influenza A virus in different host species: large-scale sequence analysis. PMID:19476650
Interspecies transmission and host restriction of avian H5N1 influenza virus. PMID:19471865
The Influenza Primer Design Resource: a new tool for translating influenza sequence data into effective diagnostics. PMID:19453490
The origin and global emergence of adamantane resistant A/H3N2 influenza viruses. PMID:19394063
Conserved amino acid markers from past influenza pandemic strains. PMID:19386124
Inferring stabilizing mutations from protein phylogenies: application to influenza hemagglutinin. PMID:19381264
Virus variation resources at the National Center for Biotechnology Information: dengue virus. PMID:19341451
Panorama phylogenetic diversity and distribution of Type A influenza virus. PMID:19325912
Influenza antiviral resistance testing in new york and wisconsin, 2006 to 2008: methodology and surveillance data. PMID:19321726
Genetic diversity in the SIR model of pathogen evolution. PMID:19287490
PrimerHunter: a primer design tool for PCR-based virus subtype identification. PMID:19264805
Characterization of avian influenza viruses A (H5N1) from wild birds, Hong Kong, 2004-2008. PMID:19239752
The role of RNA folding free energy in the evolution of the polymerase genes of the influenza A virus. PMID:19216739
Combining mutual information with structural analysis to screen for functionally important residues in influenza hemagglutinin. PMID:19209725
HLA class I molecules consistently present internal influenza epitopes. PMID:19122146
A method for the simultaneous estimation of selection intensities in overlapping genes. PMID:19098983
Influenza sequence and epitope database. PMID:19015128
Analysis of influenza B Virus NS1 protein trafficking reveals a novel interaction with nuclear speckle domains. PMID:18987144
Neutralizing human monoclonal antibody against H5N1 influenza HA selected from a Fab-phage display library. PMID:18957074
The National Center for Biotechnology Information's Protein Clusters Database. PMID:18940865
Phylogenetic characterization of H5N1 highly pathogenic avian influenza viruses isolated in Switzerland in 2006. PMID:18787938
The development and genetic diversity of H5N1 influenza virus in China, 1996-2006. PMID:18774155
Evolutionary and transmission dynamics of reassortant H5N1 influenza virus in Indonesia. PMID:18725937
Molecular epidemiology of A/H3N2 and A/H1N1 influenza virus during a single epidemic season in the United States. PMID:18725925
Epitope characterization of the protective monoclonal antibody VN04-2 shows broadly neutralizing activity against highly pathogenic H5N1. PMID:18616831
A maximum likelihood method for detecting directional evolution in protein sequences and its application to influenza A virus. PMID:18511426
Visualization of large influenza virus sequence datasets using adaptively aggregated trees with sampling-based subscale representation. PMID:18485197
The VirusBanker database uses a Java program to allow flexible searching through Bunyaviridae sequences. PMID:18251994

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annotation
metasource: Fairsharing.org
version: FAIRsharing.org: Influenza Virus Resource; Influenza Virus Resource; DOI: https://doi.org/10.25504/FAIRsharing.13cdzp; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:05 p.m.

dna sequence data
metasource: Fairsharing.org
version: FAIRsharing.org: Influenza Virus Resource; Influenza Virus Resource; DOI: https://doi.org/10.25504/FAIRsharing.13cdzp; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:05 p.m.

deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: Influenza Virus Resource; Influenza Virus Resource; DOI: https://doi.org/10.25504/FAIRsharing.13cdzp; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:05 p.m.

genome
metasource: Fairsharing.org
version: FAIRsharing.org: Influenza Virus Resource; Influenza Virus Resource; DOI: https://doi.org/10.25504/FAIRsharing.13cdzp; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:05 p.m.

influenza viruses
metasource: re3data.org
version: re3data.org: NCBI Influenza Virus Resource; editing status 2019-11-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S61C last accessed: 2022-11-04

genomes
metasource: re3data.org
version: re3data.org: NCBI Influenza Virus Resource; editing status 2019-11-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S61C last accessed: 2022-11-04

genomics
metasource: re3data.org
version: re3data.org: NCBI Influenza Virus Resource; editing status 2019-11-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S61C last accessed: 2022-11-04

influenza
metasource: re3data.org
version: re3data.org: NCBI Influenza Virus Resource; editing status 2019-11-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S61C last accessed: 2022-11-04

phylogenetic tree
metasource: re3data.org
version: re3data.org: NCBI Influenza Virus Resource; editing status 2019-11-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S61C last accessed: 2022-11-04

virusesvariation
metasource: re3data.org
version: re3data.org: NCBI Influenza Virus Resource; editing status 2019-11-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S61C last accessed: 2022-11-04

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