Spatiotemporal changes in influenza A virus prevalence among wild waterfowl inhabiting the continental United States throughout the annual cycle.
PMID:35906292
From Open Access to Circular Health: Ilaria Capua's Journey through Science and Politics.
PMID:35746767
Cross-reactive immunity potentially drives global oscillation and opposed alternation patterns of seasonal influenza A viruses.
PMID:35614123
Databases, Knowledgebases, and Software Tools for Virus Informatics.
PMID:35594018
Molecular Evidence of Orthomyxovirus Presence in Colombian Neotropical Bats.
PMID:35558106
Spatial and temporal coevolution of N2 neuraminidase and H1 and H3 hemagglutinin genes of influenza A virus in US swine.
PMID:35223081
Identification of a Permissive Secondary Mutation That Restores the Enzymatic Activity of Oseltamivir Resistance Mutation H275Y.
PMID:35045267
A Transcriptional Signature of IL-2 Expanded Natural Killer Cells Predicts More Favorable Prognosis in Bladder Cancer.
PMID:34858395
A Mutation-Selection Model of Protein Evolution under Persistent Positive Selection.
PMID:34694387
A Transcriptional Signature of PDGF-DD Activated Natural Killer Cells Predicts More Favorable Prognosis in Low-Grade Glioma.
PMID:34539622
The Infectious Disease Ontology in the age of COVID-19.
PMID:34275487
Construction and Immunogenicity of Modified mRNA-Vaccine Variants Encoding Influenza Virus Antigens.
PMID:34063689
A comprehensive analysis and resource to use CRISPR-Cas13 for broad-spectrum targeting of RNA viruses.
PMID:33778788
Genetic characterization of highly pathogenic avian influenza A (H5N8) virus isolated from domestic geese in Iraq, 2018.
PMID:33740981
Evolutionary conservation of the DRACH signatures of potential N6-methyladenosine (m6A) sites among influenza A viruses.
PMID:33633224
Computational Method for Classification of Avian Influenza A Virus Using DNA Sequence Information and Physicochemical Properties.
PMID:33584824
A conserved multi-epitope-based vaccine designed by targeting hemagglutinin protein of highly pathogenic avian H5 influenza viruses.
PMID:33251084
Systems Biology Approaches for Therapeutics Development Against COVID-19.
PMID:33194800
Detection and Characterization of Swine Origin Influenza A(H1N1) Pandemic 2009 Viruses in Humans following Zoonotic Transmission.
PMID:33115872
Using machine learning of clinical data to diagnose COVID-19: a systematic review and meta-analysis.
PMID:32993652
Infection Dynamics of Swine Influenza Virus in a Danish Pig Herd Reveals Recurrent Infections with Different Variants of the H1N2 Swine Influenza A Virus Subtype.
PMID:32927910
Immunogenicity and Protective Efficacy of Influenza A DNA Vaccines Encoding Artificial Antigens Based on Conservative Hemagglutinin Stem Region and M2 Protein in Mice.
PMID:32784907
A panel of anti-influenza virus nucleoprotein antibodies selected from phage-displayed synthetic antibody libraries with rapid diagnostic capability to distinguish diverse influenza virus subtypes.
PMID:32770098
A benchmark dataset of protein antigens for antigenicity measurement.
PMID:32632108
Different genetic barriers for resistance to HA stem antibodies in influenza H3 and H1 viruses.
PMID:32554590
Dynamics of Influenza A (H5N1) virus protein sequence diversity.
PMID:32518710
Multi-task learning sparse group lasso: a method for quantifying antigenicity of influenza A(H1N1) virus using mutations and variations in glycosylation of Hemagglutinin.
PMID:32393178
Highly pathogenic H5N6 avian influenza virus subtype clade 2.3.4.4 indigenous in South Korea.
PMID:32350323
Detection of live attenuated influenza vaccine virus and evidence of reassortment in the U.S. swine population.
PMID:32100644
The Central Role of Non-Structural Protein 1 (NS1) in Influenza Biology and Infection.
PMID:32098424
Changes in RNA secondary structure affect NS1 protein expression during early stage influenza virus infection.
PMID:31864377
The evolution and genetic diversity of avian influenza A(H9N2) viruses in Cambodia, 2015 - 2016.
PMID:31815945
A common root for coevolution and substitution rate variability in protein sequence evolution.
PMID:31792239
Metagenomic Nanopore Sequencing of Influenza Virus Direct from Clinical Respiratory Samples.
PMID:31666364
Profiling host ANP32A splicing landscapes to predict influenza A virus polymerase adaptation.
PMID:31363119
Deep sequencing of 2009 influenza A/H1N1 virus isolated from volunteer human challenge study participants and natural infections.
PMID:31226666
Computational Approaches and Challenges to Developing Universal Influenza Vaccines.
PMID:31141933
Reassortments among Avian Influenza A(H5N1) Viruses Circulating in Indonesia, 2015-2016.
PMID:30789142
A context-free encoding scheme of protein sequences for predicting antigenicity of diverse influenza A viruses.
PMID:30598102
GLUE: a flexible software system for virus sequence data.
PMID:30563445
ISU FLUture: a veterinary diagnostic laboratory web-based platform to monitor the temporal genetic patterns of Influenza A virus in swine.
PMID:30382842
A systematic review of spatial decision support systems in public health informatics supporting the identification of high risk areas for zoonotic disease outbreaks.
PMID:30376842
The Multifaceted Zoonotic Risk of H9N2 Avian Influenza.
PMID:30248906
Evolutionary pathway for the 2017 emergence of a novel highly pathogenic avian influenza A(H7N9) virus among domestic poultry in Tennessee, United States.
PMID:30236990
Deep Sequencing of H7N9 Influenza A Viruses from 16 Infected Patients from 2013 to 2015 in Shanghai Reveals Genetic Diversity and Antigenic Drift.
PMID:30232169
Detection of Viruses in Clinical Samples by Use of Metagenomic Sequencing and Targeted Sequence Capture.
PMID:30232133
Influenza A Virus M2 Protein Apical Targeting Is Required for Efficient Virus Replication.
PMID:30158290
Genetic Evidence Supports Sporadic and Independent Introductions of Subtype H5 Low-Pathogenic Avian Influenza A Viruses from Wild Birds to Domestic Poultry in North America.
PMID:30045988
Graph-guided multi-task sparse learning model: a method for identifying antigenic variants of influenza A(H3N2) virus.
PMID:29878046
Emergence and Evolution of Novel Reassortant Influenza A Viruses in Canines in Southern China.
PMID:29871917
Development and evaluation of a rapid nucleic acid amplification method to detect influenza A and B viruses in human respiratory specimens.
PMID:29778563
Avian Influenza Viruses in Wild Birds: Virus Evolution in a Multihost Ecosystem.
PMID:29769347
Inferring epidemiologic dynamics from viral evolution: 2014-2015 Eurasian/North American highly pathogenic avian influenza viruses exceed transmission threshold, R0 = 1, in wild birds and poultry in North America.
PMID:29636805
A complex epistatic network limits the mutational reversibility in the influenza hemagglutinin receptor-binding site.
PMID:29593268
Within-Host Evolution of Human Influenza Virus.
PMID:29534854
Antigenic and genetic evolution of contemporary swine H1 influenza viruses in the United States.
PMID:29453058
Mouse Models of Influenza Infection with Circulating Strains to Test Seasonal Vaccine Efficacy.
PMID:29445377
Identification of high risk areas for avian influenza outbreaks in California using disease distribution models.
PMID:29385158
Temporal distribution and genetic variants in influenza A(H1N1)pdm09 virus circulating in Mexico, seasons 2012 and 2013.
PMID:29220381
Viral Diagnostics in Plants Using Next Generation Sequencing: Computational Analysis in Practice.
PMID:29123534
The M2 protein of live, attenuated influenza vaccine encodes a mutation that reduces replication in human nasal epithelial cells.
PMID:29079099
Influenza Herd-Level Prevalence and Seasonality in Breed-to-Wean Pig Farms in the Midwestern United States.
PMID:29075636
Site-specific glycosylation profile of influenza A (H1N1) hemagglutinin through tandem mass spectrometry.
PMID:29048990
Multiple Genome Constellations of Similar and Distinct Influenza A Viruses Co-Circulate in Pigs During Epidemic Events.
PMID:28928365
Detection and characterization of an H4N6 avian-lineage influenza A virus in pigs in the Midwestern United States.
PMID:28841443
Extracting geographic locations from the literature for virus phylogeography using supervised and distant supervision methods.
PMID:28815119
Structure-Guided Functional Annotation of the Influenza A Virus NS1 Protein Reveals Dynamic Evolution of the p85β-Binding Site during Circulation in Humans.
PMID:28814525
Molecular features of influenza A (H1N1)pdm09 prevalent in Mexico during winter seasons 2012-2014.
PMID:28692701
Complete Genome Sequencing of Influenza A Viruses within Swine Farrow-to-Wean Farms Reveals the Emergence, Persistence, and Subsidence of Diverse Viral Genotypes.
PMID:28659482
A Perspective on the Structural and Functional Constraints for Immune Evasion: Insights from Influenza Virus.
PMID:28648617
Highly pathogenic avian influenza H5N1 clade 2.3.2.1 and clade 2.3.4 viruses do not induce a clade-specific phenotype in mallard ducks.
PMID:28631606
Predicting Zoonotic Risk of Influenza A Viruses from Host Tropism Protein Signature Using Random Forest.
PMID:28587080
Evidence of Intercontinental Spread and Uncommon Variants of Low-Pathogenicity Avian Influenza Viruses in Ducks Overwintering in Guatemala.
PMID:28405632
K-Pax2: Bayesian identification of cluster-defining amino acid positions in large sequence datasets.
PMID:28348810
Continual Antigenic Diversification in China Leads to Global Antigenic Complexity of Avian Influenza H5N1 Viruses.
PMID:28262734
Investigating Substitutions in Antibody-Antigen Complexes Using Molecular Dynamics: A Case Study with Broad-spectrum, Influenza A Antibodies.
PMID:28261207
Low-Pathogenic Influenza A Viruses in North American Diving Ducks Contribute to the Emergence of a Novel Highly Pathogenic Influenza A(H7N8) Virus.
PMID:28202755
Frequency of influenza H3N2 intra-subtype reassortment: attributes and implications of reassortant spread.
PMID:28034300
A Phylogeny-Based Global Nomenclature System and Automated Annotation Tool for H1 Hemagglutinin Genes from Swine Influenza A Viruses.
PMID:27981236
EuPathDB: the eukaryotic pathogen genomics database resource.
PMID:27903906
Directional and reoccurring sequence change in zoonotic RNA virus genomes visualized by time-series word count.
PMID:27808119
Annotating Protein Functional Residues by Coupling High-Throughput Fitness Profile and Homologous-Structure Analysis.
PMID:27803181
Sequence amplification via cell passaging creates spurious signals of positive adaptation in influenza virus H3N2 hemagglutinin.
PMID:27713835
3DFlu: database of sequence and structural variability of the influenza hemagglutinin at population scale.
PMID:27694207
Influenza Research Database: An integrated bioinformatics resource for influenza virus research.
PMID:27679478
Isolation of H5N6, H7N9 and H9N2 avian influenza A viruses from air sampled at live poultry markets in China, 2014 and 2015.
PMID:27608369
Southward autumn migration of waterfowl facilitates cross-continental transmission of the highly pathogenic avian influenza H5N1 virus.
PMID:27507581
Incorporating structure context of HA protein to improve antigenicity calculation for influenza virus A/H3N2.
PMID:27498613
Towards the knowledge-based design of universal influenza epitope ensemble vaccines.
PMID:27402904
Antibodies to Influenza A Viruses in Gulls at Delaware Bay, USA.
PMID:27309077
Pandemic Seasonal H1N1 Reassortants Recovered from Patient Material Display a Phenotype Similar to That of the Seasonal Parent.
PMID:27279619
A Bird's Eye View of Influenza A Virus Transmission: Challenges with Characterizing Both Sides of a Co-Evolutionary Dynamic.
PMID:27252222
The influenza A virus NS genome segment displays lineage-specific patterns in predicted RNA secondary structure.
PMID:27206548
Reticulate evolution is favored in influenza niche switching.
PMID:27114508
The global antigenic diversity of swine influenza A viruses.
PMID:27113719
Reverse transcription strand invasion based amplification (RT-SIBA): a method for rapid detection of influenza A and B.
PMID:27063012
VIP: an integrated pipeline for metagenomics of virus identification and discovery.
PMID:27026381
Integrated Omics and Computational Glycobiology Reveal Structural Basis for Influenza A Virus Glycan Microheterogeneity and Host Interactions.
PMID:26984886
Identification and characterization of influenza variants resistant to a viral endonuclease inhibitor.
PMID:26976575
Analyses of Merging Clinical and Viral Genetic Data for Influenza Surveillance.
PMID:26958299
Distinct Host Tropism Protein Signatures to Identify Possible Zoonotic Influenza A Viruses.
PMID:26915079
Molecular analyses of H3N2 canine influenza viruses isolated from Korea during 2013-2014.
PMID:26810402
Time dependence of evolutionary metrics during the 2009 pandemic influenza virus outbreak.
PMID:26770819
Coupling high-throughput genetics with phylogenetic information reveals an epistatic interaction on the influenza A virus M segment.
PMID:26754751
Deep Sequencing Reveals Potential Antigenic Variants at Low Frequencies in Influenza A Virus-Infected Humans.
PMID:26739054
FluKB: A Knowledge-Based System for Influenza Vaccine Target Discovery and Analysis of the Immunological Properties of Influenza Viruses.
PMID:26504853
Molecular pathogenesis of H5 highly pathogenic avian influenza: the role of the haemagglutinin cleavage site motif.
PMID:26467906
Discovering neutralizing antibodies targeting the stem epitope of H1N1 influenza hemagglutinin with synthetic phage-displayed antibody libraries.
PMID:26456860
Analysis of Viral Genetics for Estimating Diffusion of Influenza A H6N1.
PMID:26306229
Evolutionary Dynamics of Influenza A Viruses in US Exhibition Swine.
PMID:26243317
Phylogeography of Influenza A(H3N2) Virus in Peru, 2010-2012.
PMID:26196599
Functional Constraint Profiling of a Viral Protein Reveals Discordance of Evolutionary Conservation and Functionality.
PMID:26132554
Recent strategies and progress in identifying host factors involved in virus replication.
PMID:26112615
Multi-Dimensional Measurement of Antibody-Mediated Heterosubtypic Immunity to Influenza.
PMID:26103163
Global circulation patterns of seasonal influenza viruses vary with antigenic drift.
PMID:26053121
Geometric Constraints Dominate the Antigenic Evolution of Influenza H3N2 Hemagglutinin.
PMID:26020774
Identification of Influenza A Virus PB2 Residues Involved in Enhanced Polymerase Activity and Virus Growth in Mammalian Cells at Low Temperatures.
PMID:26018156
A comprehensive collection of systems biology data characterizing the host response to viral infection.
PMID:25977790
MapMyFlu: visualizing spatio-temporal relationships between related influenza sequences.
PMID:25940623
A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway.
PMID:25861210
Global avian influenza surveillance in wild birds: a strategy to capture viral diversity.
PMID:25811221
Advanced molecular surveillance of hepatitis C virus.
PMID:25781918
Diversifying Selection Analysis Predicts Antigenic Evolution of 2009 Pandemic H1N1 Influenza A Virus in Humans.
PMID:25741011
Spread and persistence of influenza A viruses in waterfowl hosts in the North American Mississippi migratory flyway.
PMID:25741003
EpiToolKit--a web-based workbench for vaccine design.
PMID:25712691
Influenza A viruses of swine circulating in the United States during 2009-2014 are susceptible to neuraminidase inhibitors but show lineage-dependent resistance to adamantanes.
PMID:25701593
Predicting host tropism of influenza A virus proteins using random forest.
PMID:25521718
Grouping of large populations into few CTL immune 'response-types' from influenza H1N1 genome analysis.
PMID:25505972
Unraveling the web of viroinformatics: computational tools and databases in virus research.
PMID:25428870
Predicting evolution from the shape of genealogical trees.
PMID:25385532
Appearance of L90I and N205S Mutations in Effector Domain of NS1 Gene of pdm (09) H1N1 Virus from India during 2009-2013.
PMID:25309598
Swine-to-human transmission of influenza A(H3N2) virus at agricultural fairs, Ohio, USA, 2012.
PMID:25148572
Toward a method for tracking virus evolutionary trajectory applied to the pandemic H1N1 2009 influenza virus.
PMID:25064525
Mutations within the conserved NS1 nuclear export signal lead to inhibition of influenza A virus replication.
PMID:25023993
Standardized metadata for human pathogen/vector genomic sequences.
PMID:24936976
Diffusion of influenza viruses among migratory birds with a focus on the Southwest United States.
PMID:24910106
Influenza viruses and mRNA splicing: doing more with less.
PMID:24825008
How to infer relative fitness from a sample of genomic sequences.
PMID:24770330
The EMPRES-i genetic module: a novel tool linking epidemiological outbreak information and genetic characteristics of influenza viruses.
PMID:24608033
Sampling strategies and biodiversity of influenza A subtypes in wild birds.
PMID:24599502
Role of poultry in the spread of novel H7N9 influenza virus in China.
PMID:24574407
Large-scale analysis of B-cell epitopes on influenza virus hemagglutinin - implications for cross-reactivity of neutralizing antibodies.
PMID:24570677
Literature classification for semi-automated updating of biological knowledgebases.
PMID:24564403
A LC3-interacting motif in the influenza A virus M2 protein is required to subvert autophagy and maintain virion stability.
PMID:24528869
Sequencing artifacts in the type A influenza databases and attempts to correct them.
PMID:24512607
Universal influenza B virus genomic amplification facilitates sequencing, diagnostics, and reverse genetics.
PMID:24501036
Integrating influenza antigenic dynamics with molecular evolution.
PMID:24497547
The influenza A virus protein NS1 displays structural polymorphism.
PMID:24478439
LABEL: fast and accurate lineage assignment with assessment of H5N1 and H9N2 influenza A hemagglutinins.
PMID:24466291
Genetic diversity of hemagglutinin gene of A(H1N1)pdm09 influenza strains isolated in Taiwan and its potential impact on HA-neutralizing epitope interaction.
PMID:24407429
ClassyFlu: classification of influenza A viruses with Discriminatively trained profile-HMMs.
PMID:24404173
Comparative dynamics and distribution of influenza drug resistance acquisition to protein m2 and neuraminidase inhibitors.
PMID:24214415
Metadata-driven comparative analysis tool for sequences (meta-CATS): an automated process for identifying significant sequence variations that correlate with virus attributes.
PMID:24210098
A comprehensive map of the influenza A virus replication cycle.
PMID:24088197
Subclinical avian influenza A(H5N1) virus infection in human, Vietnam.
PMID:24047510
Influenza a virus migration and persistence in North American wild birds.
PMID:24009503
Mutational analysis of the binding pockets of the diketo acid inhibitor L-742,001 in the influenza virus PA endonuclease.
PMID:23824822
Human H3N2 Influenza Viruses Isolated from 1968 To 2012 Show Varying Preference for Receptor Substructures with No Apparent Consequences for Disease or Spread.
PMID:23805213
Asparagine substitution at PB2 residue 701 enhances the replication, pathogenicity, and transmission of the 2009 pandemic H1N1 influenza A virus.
PMID:23799150
Protein clustering and RNA phylogenetic reconstruction of the influenza A [corrected] virus NS1 protein allow an update in classification and identification of motif conservation.
PMID:23667580
Evidence for the circulation and inter-hemispheric movement of the H14 subtype influenza A virus.
PMID:23555632
Viral phylodynamics.
PMID:23555203
Avian influenza virus surveillance in wild birds in Georgia: 2009-2011.
PMID:23516501
Molecular signatures of virulence in the PB1-F2 proteins of H5N1 influenza viruses.
PMID:23499672
SUMOylation affects the interferon blocking activity of the influenza A nonstructural protein NS1 without affecting its stability or cellular localization.
PMID:23468495
Cross-species comparison of site-specific evolutionary-rate variation in influenza haemagglutinin.
PMID:23382434
Peptide sharing between influenza A H1N1 hemagglutinin and human axon guidance proteins.
PMID:23378012
Systems approaches to influenza-virus host interactions and the pathogenesis of highly virulent and pandemic viruses.
PMID:23218769
Molecular characterization of the predominant influenza A(H1N1)pdm09 virus in Mexico, December 2011-February 2012.
PMID:23209653
Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community.
PMID:23202522
ViralZone: recent updates to the virus knowledge resource.
PMID:23193299
EuPathDB: the eukaryotic pathogen database.
PMID:23175615
Systematic identification of H274Y compensatory mutations in influenza A virus neuraminidase by high-throughput screening.
PMID:23152521
Integrating sequence variation and protein structure to identify sites under selection.
PMID:22977116
The immune epitope database: a historical retrospective of the first decade.
PMID:22681406
Influenza virus sequence feature variant type analysis: evidence of a role for NS1 in influenza virus host range restriction.
PMID:22398283