MYC dosage compensation is mediated by miRNA-transcription factor interactions in aneuploid cancer.
PMID:34877484
PKM2-dependent metabolic skewing of hepatic Th17 cells regulates pathogenesis of non-alcoholic fatty liver disease.
PMID:34004162
Type I interferon sensing unlocks dormant adipocyte inflammatory potential.
PMID:32488081
Clinical implications of chromatin accessibility in human cancers.
PMID:32405341
Benchmark and integration of resources for the estimation of human transcription factor activities.
PMID:31340985
Integration of Multiple Data Sources for Gene Network Inference Using Genetic Perturbation Data.
PMID:31009236
An Exploration Into Improving DNA Motif Inference by Looking for Highly Conserved Core Regions.
PMID:31008453
Defective transcription elongation in a subset of cancers confers immunotherapy resistance.
PMID:30353012
Diesel exhaust and house dust mite allergen lead to common changes in the airway methylome and hydroxymethylome.
PMID:30090644
Agrin has a pathological role in the progression of oral cancer.
PMID:29872149
Involvement of MAFB and MAFF in Retinoid-Mediated Suppression of Hepatocellular Carcinoma Invasion.
PMID:29757260
Nasal DNA methylation is associated with childhood asthma.
PMID:29692198
Transcription factors operate across disease loci, with EBNA2 implicated in autoimmunity.
PMID:29662164
Systematic target function annotation of human transcription factors.
PMID:29325558
A causal mediation model of ischemia reperfusion injury in the retina.
PMID:29121052
SalmoNet, an integrated network of ten Salmonella enterica strains reveals common and distinct pathways to host adaptation.
PMID:29057095
HTS-Net: An integrated regulome-interactome approach for establishing network regulation models in high-throughput screenings.
PMID:28949986
Temporal, spatial, and phenotypical changes of PDGFRα expressing fibroblasts during late lung development.
PMID:28408205
Identification of critical paralog groups with indispensable roles in the regulation of signaling flow.
PMID:27922122
Interactive cooperation and hierarchical operation of microRNA and transcription factor crosstalk in human transcriptional regulatory network.
PMID:27879476
Evaluating tools for transcription factor binding site prediction.
PMID:27806697
ORTI: An Open-Access Repository of Transcriptional Interactions for Interrogating Mammalian Gene Expression Data.
PMID:27723773
PAX6 MiniPromoters drive restricted expression from rAAV in the adult mouse retina.
PMID:27556059
ARN: analysis and prediction by adipogenic professional database.
PMID:27503118
Systems Genetic Analyses Highlight a TGFβ-FOXO3 Dependent Striatal Astrocyte Network Conserved across Species and Associated with Stress, Sleep, and Huntington's Disease.
PMID:27390852
Topoisomerase 1 inhibition suppresses inflammatory genes and protects from death by inflammation.
PMID:27127234
Integrative transcriptome analysis identifies deregulated microRNA-transcription factor networks in lung adenocarcinoma.
PMID:27081085
Circuits of cancer drivers revealed by convergent misregulation of transcription factor targets across tumor types.
PMID:26792175
AURA 2: Empowering discovery of post-transcriptional networks.
PMID:26779400
ORegAnno 3.0: a community-driven resource for curated regulatory annotation.
PMID:26578589
FARE-CAFE: a database of functional and regulatory elements of cancer-associated fusion events.
PMID:26384373
STAT3 pathway regulates lung-derived brain metastasis initiating cell capacity through miR-21 activation.
PMID:26314961
Impaired Cell Cycle Regulation in a Natural Equine Model of Asthma.
PMID:26292153
Combined serial analysis of gene expression and transcription factor binding site prediction identifies novel-candidate-target genes of Nr2e1 in neocortex development.
PMID:26204903
Regulatory networks in retinal ischemia-reperfusion injury.
PMID:25902940
A Study into the Evolutionary Divergence of the Core Promoter Elements of PRPF31 and TFPT.
PMID:25729402
Autophagy Regulatory Network - a systems-level bioinformatics resource for studying the mechanism and regulation of autophagy.
PMID:25635527
Finding gene regulatory network candidates using the gene expression knowledge base.
PMID:25490885
Dissecting the causal genetic mechanisms of coronary heart disease.
PMID:24623178
JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles.
PMID:24194598
The next generation of transcription factor binding site prediction.
PMID:24039567
RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes.
PMID:23547897
LASAGNA: a novel algorithm for transcription factor binding site alignment.
PMID:23522376
A quantitative proteomic profile of the Nrf2-mediated antioxidant response of macrophages to oxidized LDL determined by multiplexed selected reaction monitoring.
PMID:23166812
The dependence of expression of NF-κB-dependent genes: statistics and evolutionary conservation of control sequences in the promoter and in the 3' UTR.
PMID:22577947
The transcription factor encyclopedia.
PMID:22458515
Identification of cis-regulatory sequence variations in individual genome sequences.
PMID:21989199
Exploring pathway interactions in insulin resistant mouse liver.
PMID:21843341
MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model.
PMID:21375730
Evolution of gene regulation of pluripotency--the case for wiki tracks at genome browsers.
PMID:21190561
UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions.
PMID:21037262
A computational evaluation of over-representation of regulatory motifs in the promoter regions of differentially expressed genes.
PMID:20487530
Phyloscan: locating transcription-regulating binding sites in mixed aligned and unaligned sequence data.
PMID:20435683
Identification and characterization of putative methylation targets in the MAOA locus using bioinformatic approaches.
PMID:20421737
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles.
PMID:19906716