Animal Transcription Factor Database
Names
More detailed information about this field from each metasource.
Animal Transcription Factor Database
metasource: Fairsharing.org
version: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:09.858616
AnimalTFDB
metasource: Fairsharing.org
version: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
animal_tfdb
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:09.858616
Names
More detailed information about this field from each metasource.
Animal Transcription Factor Database
metasource: Fairsharing.orgversion: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:09.858616
AnimalTFDB
metasource: Fairsharing.orgversion: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
animal_tfdb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:09.858616
Other names: AnimalTFDB, animal_tfdb
Names
More detailed information about this field from each metasource.
Animal Transcription Factor Database
metasource: Fairsharing.orgversion: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:09.858616
AnimalTFDB
metasource: Fairsharing.orgversion: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
animal_tfdb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:09.858616
AnimalTFDB is a comprehensive animal transcription factor database. The resource is classification of transcription factors from 50 genomes from species including Homo sapiens and Caenorhabditis elegans. The database also has information on co-transcription factors and chromatin remodelling factors.
Description
More detailed information about this field from each metasource.
AnimalTFDB is a comprehensive animal transcription factor database. The resource is classification of transcription factors from 50 genomes from species including Homo sapiens and Caenorhabditis elegans. The database also has information on co-transcription factors and chromatin remodelling factors.
metasource: Fairsharing.orgversion: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Transcription factor are key regulators in gene expression. AnimalTFDB is a comprehensive database including classification and annotation of genome-wide transcription factors (TFs), transcription co-factors and chromatin remodeling factors in animal genomes. The TFs are further classified into 70 families based on their conserved DBDs. The AnimalTFDB 1.0 predicted TFs in 50 animal genomes and it was online in 2011. In 2014, we updated the database to version 2.0 as many more annotation data and new genome sequences available. In AnimalTFDB 2.0, we identified 72336 TF genes, 21053 transcription co-factor genes, and 6502 chromatin remodeling factor genes from 65 species covering main animal lineages. Abundant annotations, such as gene basic information, protein functional domain, gene ontology, pathway, protein-protein interaction, ortholog, paralog and gene model are provided. Besides that, we also made several new features and functions. These includes (1) gene expression from RNA-Seq for 9 model species, (2) gene phenotype information, (3) multiple sequence alignment of TF DNA-binding domains, and the weblogo and phylogenetic tree based on the alignment, (4) a TF prediction server to identify new TFs from input sequences, and (5) a BLAST server to search against TFs in AnimalTFDB. We aim to maintain the AnimalTFDB as a solid resource for TF identification and studies of transcription regulation and comparative genomics.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Comprehensive TF database; identified and classified all the genome-wide TFs in 50 sequenced animal genomes. Also collects transcription co-factors and chromatin remodeling factors of those genomes, which are also essential in the gene transcription regulation.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:09.858616
Webpage:
http://bioinfo.life.hust.edu.cn/AnimalTFDB/Webpage
More detailed information about this field from each metasource.
http://bioinfo.life.hust.edu.cn/AnimalTFDB/
metasource: Fairsharing.orgversion: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:09.858616
http://bioinfo.life.hust.edu.cn/AnimalTFDB/index.php
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
More detailed information about this field from each metasource.
AnimalTFDB 3.0: a comprehensive resource for annotation and prediction of animal transcription factors
PMID: 30204897
metasource: Fairsharing.org
version: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
AnimalTFDB: a comprehensive animal transcription factor database
PMID: 22080564
metasource: Fairsharing.org
version: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:09.858616
AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors
PMID: 25262351
metasource: Fairsharing.org
version: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://dx.doi.org/10.1093/nar/gku887
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
AnimalTFDB 3.0: a comprehensive resource for annotation and prediction of animal transcription factors
PMID: 30204897
metasource: Fairsharing.org
version: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
AnimalTFDB: a comprehensive animal transcription factor database
PMID: 22080564
metasource: Fairsharing.org
version: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:09.858616
AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors
PMID: 25262351
metasource: Fairsharing.org
version: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://dx.doi.org/10.1093/nar/gku887
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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AnimalTFDB 3.0: a comprehensive resource for annotation and prediction of animal transcription factors
PubMed citations: 196.
196 articles citing: AnimalTFDB 3.0: a comprehensive resource for annotation and prediction of animal transcription factors
Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data with SpaTalk. PMID:35908020
Functional Genomics Analysis to Disentangle the Role of Genetic Variants in Major Depression. PMID:35886042
Association of circulating gene expression signatures with stiffness following total knee arthroplasty for osteoarthritis: a pilot study. PMID:35879399
Identification of enhancers responsible for the coordinated expression of myosin heavy chain isoforms in skeletal muscle. PMID:35842589
Systematic identification of cell-fate regulatory programs using a single-cell atlas of mouse development. PMID:35817981
EEF1A1 transcription cofactor gene polymorphism is associated with muscle gene expression and residual feed intake in Nelore cattle. PMID:35816191
A miR-9-5p/FOXO1/CPEB3 Feed-Forward Loop Drives the Progression of Hepatocellular Carcinoma. PMID:35805200
Tandem Mass Tag-based proteomics analysis reveals the vital role of inflammation in traumatic brain injury in a mouse model. PMID:35799536
Integrative analysis of miRNA and mRNA profiles reveals that gga-miR-106-5p inhibits adipogenesis by targeting the KLF15 gene in chickens. PMID:35791010
SMRT Sequencing Reveals Candidate Genes and Pathways With Medicinal Value in Cipangopaludina chinensis. PMID:35783279
Differentiation of T Helper 17 Cells May Mediate the Abnormal Humoral Immunity in IgA Nephropathy and Inflammatory Bowel Disease Based on Shared Genetic Effects. PMID:35769467
Endothelial cell heterogeneity and microglia regulons revealed by a pig cell landscape at single-cell level. PMID:35750885
The Isolation and Full-Length Transcriptome Sequencing of a Novel Nidovirus and Response of Its Infection in Japanese Flounder (Paralichthys olivaceus). PMID:35746687
Sequence, Expression, and Anti-GCRV Function of the Ferritin from the Grass Carp, Ctenopharyngodon idellus. PMID:35743279
Expression Regulation of Water Reabsorption Genes and Transcription Factors in the Kidneys of Lepus yarkandensis. PMID:35721542
A 3-Gene Random Forest Model to Diagnose Non-obstructive Azoospermia Based on Transcription Factor-Related Henes. PMID:35715550
Single-cell analysis reveals X upregulation is not global in pre-gastrulation embryos. PMID:35707719
The role of plasma exosomal lnc-SNAPC5-3:4 in monitoring the efficacy of anlotinib in the treatment of advanced non-small cell lung cancer. PMID:35672525
Transcriptome Profile Reveals Genetic and Metabolic Mechanisms Related to Essential Fatty Acid Content of Intramuscular Longissimus thoracis in Nellore Cattle. PMID:35629975
Genome-wide identification and characterization of superoxide dismutases in four oyster species reveals functional differentiation in response to biotic and abiotic stress. PMID:35585505
MEF2C Expression Is Regulated by the Post-transcriptional Activation of the METTL3-m6A-YTHDF1 Axis in Myoblast Differentiation. PMID:35573410
A genome-wide CRISPR-Cas9 knockout screen identifies essential and growth-restricting genes in human trophoblast stem cells. PMID:35538076
m6A-mediated modulation coupled with transcriptional regulation shapes long noncoding RNA repertoire of the cGAS-STING signaling. PMID:35495108
Dissecting chicken germ cell dynamics by combining a germ cell tracing transgenic chicken model with single-cell RNA sequencing. PMID:35465157
A Single-Nucleotide Polymorphism in the Promoter of Porcine ARHGAP24 Gene Regulates Aggressive Behavior of Weaned Pigs After Mixing by Affecting the Binding of Transcription Factor p53. PMID:35433684
Polyploidy as a Fundamental Phenomenon in Evolution, Development, Adaptation and Diseases. PMID:35408902
Trophectoderm Transcriptome Analysis in LIN28 Knockdown Ovine Conceptuses Suggests Diverse Roles of the LIN28-let-7 Axis in Placental and Fetal Development. PMID:35406798
Disrupted myelination network in the cingulate cortex of Parkinson's disease. PMID:35394697
Single-Cell RNA-Seq Reveals the Cellular Diversity and Developmental Characteristics of the Retinas of an Infant and a Young Child. PMID:35386199
Pseudo-Temporal Analysis of Single-Cell RNA Sequencing Reveals Trans-Differentiation Potential of Greater Epithelial Ridge Cells Into Hair Cells During Postnatal Development of Cochlea in Rats. PMID:35370544
Single-cell and spatial analysis reveal interaction of FAP+ fibroblasts and SPP1+ macrophages in colorectal cancer. PMID:35365629
Study on the role of transcription factor SPI1 in the development of glioma. PMID:35361282
Deciphering Key Foreign Body Reaction-Related Transcription Factors and Genes Through Transcriptome Analysis. PMID:35350715
Transcriptome Profiling of Developing Ovine Fat Tail Tissue Reveals an Important Role for MTFP1 in Regulation of Adipogenesis. PMID:35350385
Actin-binding Rho activating C-terminal like (ABRACL) transcriptionally regulated by MYB proto-oncogene like 2 (MYBL2) promotes the proliferation, invasion, migration and epithelial-mesenchymal transition of breast cancer cells. PMID:35341461
Conservation of dynamic characteristics of transcriptional regulatory elements in periodic biological processes. PMID:35300586
A multidimensional coding architecture of the vagal interoceptive system. PMID:35296859
Systematic reconstruction of cellular trajectories across mouse embryogenesis. PMID:35288709
The fiber diameter traits of Tibetan cashmere goats are governed by the inherent differences in stress, hypoxic, and metabolic adaptations: an integrative study of proteome and transcriptome. PMID:35255833
Tet-mediated DNA demethylation regulates specification of hematopoietic stem and progenitor cells during mammalian embryogenesis. PMID:35235365
Phosphorylated NFS1 weakens oxaliplatin-based chemosensitivity of colorectal cancer by preventing PANoptosis. PMID:35221331
Comparative Investigation of Gene Regulatory Processes Underlying Avian Influenza Viruses in Chicken and Duck. PMID:35205087
Functional and Genetic Characterization of Porcine Beige Adipocytes. PMID:35203402
An epigenomic shift in amygdala marks the transition to maternal behaviors in alloparenting virgin female mice. PMID:35192674
Independent Evolution of the MYB Family in Brown Algae. PMID:35186015
Cortisol safeguards oogenesis by promoting follicular cell survival. PMID:35167018
Network inference with Granger causality ensembles on single-cell transcriptomics. PMID:35139376
The comprehensive investigation of transcription factor AP-2 alpha in lung adenocarcinoma. PMID:35117502
Profiling and functional characterization of maternal mRNA translation during mouse maternal-to-zygotic transition. PMID:35108058
Molecular mechanisms governing circulating immune cell heterogeneity across different species revealed by single-cell sequencing. PMID:35092700
Systematic analysis of naturally occurring insertions and deletions that alter transcription factor spacing identifies tolerant and sensitive transcription factor pairs. PMID:35049498
Mapping short tandem repeats for liver gene expression traits helps prioritize potential causal variants for complex traits in pigs. PMID:35034641
TF-Marker: a comprehensive manually curated database for transcription factors and related markers in specific cell and tissue types in human. PMID:34986601
Differential Co-Expression Network Analysis Reveals Key Hub-High Traffic Genes as Potential Therapeutic Targets for COVID-19 Pandemic. PMID:34975885
Supranutritional Maternal Organic Selenium Supplementation during Different Trimesters of Pregnancy Affects the Muscle Gene Transcriptome of Newborn Beef Calves in a Time-Dependent Manner. PMID:34946830
Identification of transcriptional regulatory network associated with response of host epithelial cells to SARS-CoV-2. PMID:34907210
A comprehensive transcription factor and DNA-binding motif resource for the construction of gene regulatory networks in Botrytis cinerea and Trichoderma atroviride. PMID:34900134
Single cell atlas for 11 non-model mammals, reptiles and birds. PMID:34873160
The Cellular and Viral circRNAome Induced by Respiratory Syncytial Virus Infection. PMID:34872355
Dynamic Expression and Regulatory Network of Circular RNA for Abdominal Preadipocytes Differentiation in Chicken (Gallus gallus). PMID:34869349
A Transcription Factor-Based Risk Model for Predicting the Prognosis of Prostate Cancer and Potential Therapeutic Drugs. PMID:34853602
Expression of Immune Related Genes and Possible Regulatory Mechanisms in Alzheimer's Disease. PMID:34804058
Growth of Biological Complexity from Prokaryotes to Hominids Reflected in the Human Genome. PMID:34769071
A shared transcriptional code orchestrates temporal patterning of the central nervous system. PMID:34767545
Inhibition of the renin-angiotensin system causes concentric hypertrophy of renal arterioles in mice and humans. PMID:34762601
ImmReg: the regulon atlas of immune-related pathways across cancer types. PMID:34755873
Regulatory network of miRNA, lncRNA, transcription factor and target immune response genes in bovine mastitis. PMID:34753991
Fibromine is a multi-omics database and mining tool for target discovery in pulmonary fibrosis. PMID:34741074
Integrated Network Analysis to Identify Key Modules and Potential Hub Genes Involved in Bovine Respiratory Disease: A Systems Biology Approach. PMID:34733317
Apolipoprotein D as a Potential Biomarker and Construction of a Transcriptional Regulatory-Immune Network Associated with Osteoarthritis by Weighted Gene Coexpression Network Analysis. PMID:34719950
TcoFBase: a comprehensive database for decoding the regulatory transcription co-factors in human and mouse. PMID:34718747
Comprehensive Analysis of Key mRNAs and lncRNAs in Osteosarcoma Response to Preoperative Chemotherapy with Prognostic Values. PMID:34671904
Transcriptome Profiling Reveals Important Transcription Factors and Biological Processes in Skin Regeneration Mediated by Mechanical Stretch. PMID:34659370
Neuropeptide S (NPS) and its receptor (NPSR1) in chickens: cloning, tissue expression, and functional analysis. PMID:34634709
An atlas of cortical arealization identifies dynamic molecular signatures. PMID:34616070
Interaction of Male Specific Lethal complex and genomic imbalance on global gene expression in Drosophila. PMID:34608252
Regulated splicing of large exons is linked to phase-separation of vertebrate transcription factors. PMID:34605568
FOXP4 promotes laryngeal squamous cell carcinoma progression through directly targeting LEF‑1. PMID:34590150
Conserved and species-specific chromatin remodeling and regulatory dynamics during mouse and chicken limb bud development. PMID:34584102
Comprehensive Characterization of Multitissue Expression Landscape, Co-Expression Networks and Positive Selection in Pikeperch. PMID:34571938
Time Course Transcriptomic Study Reveals the Gene Regulation During Liver Development and the Correlation With Abdominal Fat Weight in Chicken. PMID:34567076
Human cytomegalovirus expands a CD8+ T cell population with loss of BCL11B expression and gain of NK cell identity. PMID:34559552
Single-cell transcriptomics reveal DHX9 in mature B cell as a dynamic network biomarker before lymph node metastasis in CRC. PMID:34553035
Animal-eRNAdb: a comprehensive animal enhancer RNA database. PMID:34551433
The transcription factor reservoir and chromatin landscape in activated plasmacytoid dendritic cells. PMID:34544361
An integrated analysis of mRNAs, lncRNAs, and miRNAs based on weighted gene co-expression network analysis involved in bovine endometritis. PMID:34508138
Centromere protein E as a novel biomarker and potential therapeutic target for retinoblastoma. PMID:34482803
Single-cell transcriptomic landscape reveals tumor specific innate lymphoid cells associated with colorectal cancer progression. PMID:34467243
Seeing the forest through the trees: prioritising potentially functional interactions from Hi-C. PMID:34454581
Developmental and evolutionary dynamics of cis-regulatory elements in mouse cerebellar cells. PMID:34446581
m6A-express: uncovering complex and condition-specific m6A regulation of gene expression. PMID:34417605
Transcriptome and Function of Novel Immunosuppressive Autoreactive Invariant Natural Killer T Cells That Are Absent in Progressive Multiple Sclerosis. PMID:34385365
NGN2 induces diverse neuron types from human pluripotency. PMID:34358451
TRAIP modulates the IGFBP3/AKT pathway to enhance the invasion and proliferation of osteosarcoma by promoting KANK1 degradation. PMID:34349117
The pioneer transcription factors Foxa1 and Foxa2 regulate alternative RNA splicing during thymocyte positive selection. PMID:34323272
Characterizing the Metabolic and Immune Landscape of Non-small Cell Lung Cancer Reveals Prognostic Biomarkers Through Omics Data Integration. PMID:34295900
Spatiotemporal dynamics of inner ear sensory and non-sensory cells revealed by single-cell transcriptomics. PMID:34260939
Network and co-expression analysis of airway smooth muscle cell transcriptome delineates potential gene signatures in asthma. PMID:34257337
Bayesian information sharing enhances detection of regulatory associations in rare cell types. PMID:34252956
RNAseq studies reveal distinct transcriptional response to vitamin A deficiency in small intestine versus colon, uncovering novel vitamin A-regulated genes. PMID:34242724
Dissecting immune cell stat regulation network reveals biomarkers to predict ICB therapy responders in melanoma. PMID:34238310
Integrated Transcriptomic and Proteomic Analysis Reveals Up-Regulation of Apoptosis and Small Heat Shock Proteins in Lens of Rats Under Low Temperature. PMID:34220548
Nanopore-based full-length transcriptome sequencing of Muscovy duck (Cairina moschata) ovary. PMID:34198095
C/EBPδ drives key endocrine signals in the human amnion at parturition. PMID:34185432
Identification of ZNF26 as a Prognostic Biomarker in Colorectal Cancer by an Integrated Bioinformatic Analysis. PMID:34178996
Single-cell RNA-seq reveals fibroblast heterogeneity and increased mesenchymal fibroblasts in human fibrotic skin diseases. PMID:34140509
TIMEOR: a web-based tool to uncover temporal regulatory mechanisms from multi-omics data. PMID:34125906
Screening of non-alcoholic steatohepatitis (NASH)-related datasets and identification of NASH-related genes. PMID:34093943
CCL23 suppresses liver cancer progression through the CCR1/AKT/ESR1 feedback loop. PMID:34050704
Charting human development using a multi-endodermal organ atlas and organoid models. PMID:34019796
Alternative splicing perturbation landscape identifies RNA binding proteins as potential therapeutic targets in cancer. PMID:33996260
FABP4 deactivates NF-κB-IL1α pathway by ubiquitinating ATPB in tumor-associated macrophages and promotes neuroblastoma progression. PMID:33931964
The chromatin accessibility landscape reveals distinct transcriptional regulation in the induction of human primordial germ cell-like cells from pluripotent stem cells. PMID:33930315
Genome-Wide Identification, Comparison, and Expression Analysis of Transcription Factors in Ascidian Styela clava. PMID:33919240
Cancer Cells Retrace a Stepwise Differentiation Program during Malignant Progression. PMID:33910926
A Combination of RNA-Seq Analysis and Use of TCGA Database for Determining the Molecular Mechanism and Identifying Potential Drugs for GJB1 in Ovarian Cancer. PMID:33883906
Transcriptomic analysis to infer key molecular players involved during host response to NDV challenge in Gallus gallus (Leghorn & Fayoumi). PMID:33875770
Cellular fate of intersex differentiation. PMID:33846307
Characterization of Four Orphan Receptors (GPR3, GPR6, GPR12 and GPR12L) in Chickens and Ducks and Regulation of GPR12 Expression in Ovarian Granulosa Cells by Progesterone. PMID:33801713
Machine learning predicts nucleosome binding modes of transcription factors. PMID:33784978
Functional genomics study of protein inhibitor of activated STAT1 in mouse hippocampal neuronal cells revealed by RNA sequencing. PMID:33759814
Combining bulk and single-cell RNA-sequencing data to reveal gene expression pattern of chondrocytes in the osteoarthritic knee. PMID:33749514
A computer-guided design tool to increase the efficiency of cellular conversions. PMID:33712564
FOXC1 Downregulates Nanog Expression by Recruiting HDAC2 to Its Promoter in F9 Cells Treated by Retinoic Acid. PMID:33668324
Loss of retinoic acid receptor-related receptor alpha (Rorα) promotes the progression of UV-induced cSCC. PMID:33664254
"All-In-One" Genetic Tool Assessing Endometrial Receptivity for Personalized Screening of Female Sex Steroid Hormones. PMID:33659249
Single-cell RNA-seq dissects the intratumoral heterogeneity of triple-negative breast cancer based on gene regulatory networks. PMID:33575114
Divergence in Coding Sequence and Expression of Different Functional Categories of Immune Genes between Two Wild Rodent Species. PMID:33565592
Cerebrum, liver, and muscle regulatory networks uncover maternal nutrition effects in developmental programming of beef cattle during early pregnancy. PMID:33531552
Integrative Proteomic and Phosphoproteomic Analyses of Granulosa Cells During Follicular Atresia in Porcine. PMID:33520998
Identification and Analyzation of Differentially Expressed Transcription Factors in Endometriosis. PMID:33490107
Investigating the role of dachshund b in the development of the pancreatic islet in zebrafish. PMID:33449448
Comparative transcriptomic analysis of rat versus mouse cerebral cortex after traumatic brain injury. PMID:33318400
A systems biology framework integrating GWAS and RNA-seq to shed light on the molecular basis of sperm quality in swine. PMID:33292187
MolluscDB: an integrated functional and evolutionary genomics database for the hyper-diverse animal phylum Mollusca. PMID:33219670
A molecular cell atlas of the human lung from single-cell RNA sequencing. PMID:33208946
Transcriptome Analyses of β-Thalassemia -28(A>G) Mutation Using Isogenic Cell Models Generated by CRISPR/Cas9 and Asymmetric Single-Stranded Oligodeoxynucleotides (assODNs). PMID:33193694
GRNdb: decoding the gene regulatory networks in diverse human and mouse conditions. PMID:33151298
HeRA: an atlas of enhancer RNAs across human tissues. PMID:33119754
RNA-Seq Analysis Reveals Hub Genes Involved in Chicken Intramuscular Fat and Abdominal Fat Deposition During Development. PMID:33117416
Integrated Analyses of Mouse Stem Cell Transcriptomes Provide Clues for Stem Cell Maintenance and Transdifferentiation. PMID:33101382
MicroRNA-488 inhibits proliferation and motility of tumor cells via downregulating FSCN1, modulated by Notch3 in breast carcinomas. PMID:33099573
Genome-Wide Co-Expression Distributions as a Metric to Prioritize Genes of Functional Importance. PMID:33092259
Methylome and transcriptome profiles in three yak tissues revealed that DNA methylation and the transcription factor ZGPAT co-regulate milk production. PMID:33081725
Single-cell transcriptomics identifies divergent developmental lineage trajectories during human pituitary development. PMID:33077725
Multiple Isolated Transcription Factors Act as Switches and Contribute to Species Uniqueness. PMID:33003522
Genetic variations (eQTLs) in muscle transcriptome and mitochondrial genes, and trans-eQTL molecular pathways in feed efficiency from Danish breeding pigs. PMID:32941478
Transcription factor NFYA promotes G1/S cell cycle transition and cell proliferation by transactivating cyclin D1 and CDK4 in clear cell renal cell carcinoma. PMID:32905496
Organoids Model Transcriptional Hallmarks of Oncogenic KRAS Activation in Lung Epithelial Progenitor Cells. PMID:32891189
Dissecting Transcription Factor-Target Interaction in Bovine Coronavirus Infection. PMID:32872640
Genome-wide pathogenesis interpretation using a heat diffusion-based systems genetics method and implications for gene function annotation. PMID:32869547
hTFtarget: A Comprehensive Database for Regulations of Human Transcription Factors and Their Targets. PMID:32858223
Single cell transcriptomics identifies a signaling network coordinating endoderm and mesoderm diversification during foregut organogenesis. PMID:32855417
Integrated Bioinformatics Analysis Reveals Function and Regulatory Network of miR-200b-3p in Endometriosis. PMID:32802844
An integrative multi-omics analysis to identify candidate DNA methylation biomarkers related to prostate cancer risk. PMID:32764609
Activation of a neural stem cell transcriptional program in parenchymal astrocytes. PMID:32744501
Redefining fundamental concepts of transcription initiation in bacteria. PMID:32665585
Detection and Independent Validation of Model-Based Quantitative Transcriptional Regulation Relationships Altered in Lung Cancers. PMID:32656193
Decoding the differentiation of mesenchymal stem cells into mesangial cells at the transcriptomic level. PMID:32635896
The expression and regulation of HOX genes and membrane proteins among different cytogenetic groups of acute myeloid leukemia. PMID:32614525
Gene Networks Driving Genetic Variation in Milk and Cheese-Making Traits of Spanish Assaf Sheep. PMID:32605032
Dynamic transcriptional and chromatin accessibility landscape of medaka embryogenesis. PMID:32591361
Single-cell RNA sequencing reveals cell type- and artery type-specific vascular remodelling in male spontaneously hypertensive rats. PMID:32589721
Comprehensive Analysis of Key Genes and Regulatory Elements in Osteosarcoma Affected by Bone Matrix Mineral With Prognostic Values. PMID:32582282
Leishmania amazonensis Subverts the Transcription Factor Landscape in Dendritic Cells to Avoid Inflammasome Activation and Stall Maturation. PMID:32582184
MIPPIE: the mouse integrated protein-protein interaction reference. PMID:32496562
Integrated omics in Drosophila uncover a circadian kinome. PMID:32483184
Gene regulation could be attributed to TCF3 and other key transcription factors in the muscle of pubertal heifers. PMID:32432381
Single-nucleus RNA-seq identifies divergent populations of FSHD2 myotube nuclei. PMID:32365093
pSTAT3 Y705 is a prognostic biomarker identified from time-series gene expression profiles of a chemically induced mouse model of hepatocellular carcinoma. PMID:32355553
A combinatorial code of transcription factors specifies subtypes of visual motion-sensing neurons in Drosophila. PMID:32238425
Identification of a functional human-unique 351-bp Alu insertion polymorphism associated with major depressive disorder in the 1p31.1 GWAS risk loci. PMID:32193514
Gene Expression Profiling Indicated Diverse Functions and Characteristics of Core Genes in Pea Aphid. PMID:32183501
Embryonic ethanol exposure alters expression of sox2 and other early transcripts in zebrafish, producing gastrulation defects. PMID:32127575
Expression of DOCK10.1 protein revealed with a specific antiserum: insights into regulation of first exon isoforms of DOCK10. PMID:32112301
A time-resolved multi-omic atlas of the developing mouse liver. PMID:32051188
eQTLMAPT: Fast and Accurate eQTL Mediation Analysis With Efficient Permutation Testing Approaches. PMID:31998368
Human iPSC-derived Down syndrome astrocytes display genome-wide perturbations in gene expression, an altered adhesion profile, and increased cellular dynamics. PMID:31943018
Effects of Intronic SNPs in the Myostatin Gene on Growth and Carcass Traits in Colored Polish Merino Sheep. PMID:31861472
SGID: a comprehensive and interactive database of the silkworm. PMID:31836898
Stalled developmental programs at the root of pediatric brain tumors. PMID:31768071
Revealing dynamics of gene expression variability in cell state space. PMID:31740822
Transcriptional Profiling of Xenogeneic Transplants: Examining Human Pluripotent Stem Cell-Derived Grafts in the Rodent Brain. PMID:31680060
Identification of STAB1 in Multiple Datasets as a Prognostic Factor for Cytogenetically Normal AML: Mechanism and Drug Indications. PMID:31670197
Transcriptional Basis of Mouse and Human Dendritic Cell Heterogeneity. PMID:31668803
Integrated Analysis of Brain Transcriptome Reveals Convergent Molecular Pathways in Autism Spectrum Disorder. PMID:31649562
Cis-regulatory basis of sister cell type divergence in the vertebrate retina. PMID:31633482
Decoding human fetal liver haematopoiesis. PMID:31597962
The Transcription Factor Elf3 Is Essential for a Successful Mesenchymal to Epithelial Transition. PMID:31404945
RNAi based transcriptome suggests genes potentially regulated by HSF1 in the Pacific oyster Crassostrea gigas under thermal stress. PMID:31395030
PropaNet: Time-Varying Condition-Specific Transcriptional Network Construction by Network Propagation. PMID:31258543
Transcriptome and Regulatory Network Analyses of CD19-CAR-T Immunotherapy for B-ALL. PMID:31201998
Bayes Factor-Based Regulatory Gene Network Analysis of Genome-Wide Association Study of Economic Traits in a Purebred Swine Population. PMID:30974885
Genomic, Transcriptomic, and Epigenomic Features Differentiate Genes That Are Relevant for Muscular Polyunsaturated Fatty Acids in the Common Carp. PMID:30930941
The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection. PMID:30626175
ENPD - A Database of Eukaryotic Nucleic Acid Binding Proteins: Linking Gene Regulations to Proteins. PMID:30476229 -
AnimalTFDB: a comprehensive animal transcription factor database
PubMed citations: 168.
168 articles citing: AnimalTFDB: a comprehensive animal transcription factor database
Computational Methods to Identify Cell-Fate Determinants, Identity Transcription Factors, and Niche-Induced Signaling Pathways for Stem Cell Research. PMID:35175592
Transcriptional Landscape of Enhancer RNAs in Peripheral Blood Mononuclear Cells from Patients with Systemic Lupus Erythematosus. PMID:35153501
Comprehensive Analysis Identified ETV7 as a Potential Prognostic Biomarker in Bladder Cancer. PMID:34926692
Systems biology and machine learning approaches identify drug targets in diabetic nephropathy. PMID:34873190
Mapping cis-regulatory elements in the midgestation mouse placenta. PMID:34785717
Efficient induction and sustenance of pluripotent stem cells from bovine somatic cells. PMID:34719702
The Dynamic Changes of Transcription Factors During the Development Processes of Human Biparental and Uniparental Embryos. PMID:34604214
Molecular diversity of diencephalic astrocytes reveals adult astrogenesis regulated by Smad4. PMID:34549820
The transcription factor reservoir and chromatin landscape in activated plasmacytoid dendritic cells. PMID:34544361
Bayesian identification of candidate transcription factors for the regulation of Aqp2 gene expression. PMID:34308668
Integrated Analysis of lncRNAs, mRNAs, and TFs to Identify Regulatory Networks Underlying MAP Infection in Cattle. PMID:34290737
MIMIC: an optimization method to identify cell type-specific marker panel for cell sorting. PMID:34180954
Peculiarities of Plasmodium falciparum Gene Regulation and Chromatin Structure. PMID:34068393
Assessing nucleic acid binding activity of four dinoflagellate cold shock domain proteins from Symbiodinium kawagutii and Lingulodinium polyedra. PMID:33964870
Genome-wide analysis and functional characterization of the Dof transcription factor family in rice (Oryza sativa L.). PMID:33856565
Identification of VIMP as a gene inhibiting cytokine production in human CD4+ effector T cells. PMID:33851102
Sequential progenitor states mark the generation of pancreatic endocrine lineages in mice and humans. PMID:33692492
Causal network inference from gene transcriptional time-series response to glucocorticoids. PMID:33513136
Human transcription factors responsive to initial reprogramming predominantly undergo legitimate reprogramming during fibroblast conversion to iPSCs. PMID:33184372
Transcription Factor PLAGL1 Is Associated with Angiogenic Gene Expression in the Placenta. PMID:33171905
Role of the Nuclear Receptor Corepressor 1 (NCOR1) in Atherosclerosis and Associated Immunometabolic Diseases. PMID:33117357
Cell Development Deficiency and Gene Expression Dysregulation of Trisomy 21 Retina Revealed by Single-Nucleus RNA Sequencing. PMID:33072724
Identification of Potential Biomarkers of Polycystic Ovary Syndrome via Integrated Bioinformatics Analysis. PMID:33067753
A limited set of transcriptional programs define major cell types. PMID:32759341
Spatiotemporal DNA methylome dynamics of the developing mouse fetus. PMID:32728242
Dissecting Murine Muscle Stem Cell Aging through Regeneration Using Integrative Genomic Analysis. PMID:32726628
Valproic acid promotes mitochondrial dysfunction in primary human hepatocytes in vitro; impact of C/EBPα-controlled gene expression. PMID:32623605
Dynamic Transcriptional Responses to Injury of Regenerative and Non-regenerative Cardiomyocytes Revealed by Single-Nucleus RNA Sequencing. PMID:32220304
A single cell transcriptome atlas of the developing zebrafish hindbrain. PMID:32094115
Retinoic Acid Induces Embryonic Stem Cells (ESCs) Transition to 2 Cell-Like State Through a Coordinated Expression of Dux and Duxbl1. PMID:32010697
Transcriptional network dynamics during the progression of pluripotency revealed by integrative statistical learning. PMID:31853542
A Genetic Model of the Connectome. PMID:31806491
Differential co-expression-based detection of conditional relationships in transcriptional data: comparative analysis and application to breast cancer. PMID:31727119
Transcriptional landscape and clinical utility of enhancer RNAs for eRNA-targeted therapy in cancer. PMID:31594934
Animal-ImputeDB: a comprehensive database with multiple animal reference panels for genotype imputation. PMID:31584087
IL-1β dominates the promucin secretory cytokine profile in cystic fibrosis. PMID:31524632
Single-cell RNA-seq reveals the invasive trajectory and molecular cascades underlying glioblastoma progression. PMID:31487431
Multi-omic Profiling Reveals Dynamics of the Phased Progression of Pluripotency. PMID:31078527
Defining multistep cell fate decision pathways during pancreatic development at single-cell resolution. PMID:30737258
Subtype-specific regulatory network rewiring in acute myeloid leukemia. PMID:30420649
Single-cell analyses identify distinct and intermediate states of zebrafish pancreatic islet development. PMID:30407522
Gene expression variability across cells and species shapes innate immunity. PMID:30356220
Cell cycle-resolved chromatin proteomics reveals the extent of mitotic preservation of the genomic regulatory landscape. PMID:30279501
Targeting nuclear receptor NR4A1-dependent adipocyte progenitor quiescence promotes metabolic adaptation to obesity. PMID:30277475
Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration. PMID:30262634
AnimalTFDB 3.0: a comprehensive resource for annotation and prediction of animal transcription factors. PMID:30204897
Differential Co-expression and Regulatory Network Analysis Uncover the Relapse Factor and Mechanism of T Cell Acute Leukemia. PMID:30195757
Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors. PMID:30093597
Ultrahigh thermal conductivity confirmed in boron arsenide. PMID:30093587
A revised airway epithelial hierarchy includes CFTR-expressing ionocytes. PMID:30069044
Single-cell transcriptomic analyses reveal distinct dorsal/ventral pancreatic programs. PMID:30065074
Single-cell RNA-seq reveals the diversity of trophoblast subtypes and patterns of differentiation in the human placenta. PMID:30042384
Distinct Molecular Signatures of Quiescent and Activated Adult Neural Stem Cells Reveal Specific Interactions with Their Microenvironment. PMID:29983386
Transcriptional synergy as an emergent property defining cell subpopulation identity enables population shift. PMID:29968757
The gene regulatory network of mESC differentiation: a benchmark for reverse engineering methods. PMID:29786557
An intersection network based on combining SNP coassociation and RNA coexpression networks for feed utilization traits in Japanese Black cattle. PMID:29762780
Expression profiling of cell-intrinsic regulators in the process of differentiation of human iPSCs into retinal lineages. PMID:29751772
A closer look at cross-validation for assessing the accuracy of gene regulatory networks and models. PMID:29700343
Distinct signalling properties of insulin receptor substrate (IRS)-1 and IRS-2 in mediating insulin/IGF-1 action. PMID:29550500
An integrated approach to infer cross-talks between intracellular protein transport and signaling pathways. PMID:29536825
Reprogramming cell fate with artificial transcription factors. PMID:29389011
Integrative Genomic Analysis Predicts Causative Cis-Regulatory Mechanisms of the Breast Cancer-Associated Genetic Variant rs4415084. PMID:29351903
Genes uniquely expressed in human growth plate chondrocytes uncover a distinct regulatory network. PMID:29262782
CHIP Regulates Aquaporin-2 Quality Control and Body Water Homeostasis. PMID:29242247
Improving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Changes. PMID:29222512
Core-binding factor β and Runx transcription factors promote adaptive natural killer cell responses. PMID:29222089
Single-cell RNA-Seq analysis reveals dynamic trajectories during mouse liver development. PMID:29202695
A Cell-Line-Specific Atlas of PARP-Mediated Protein Asp/Glu-ADP-Ribosylation in Breast Cancer. PMID:29166620
Comparative analysis of weighted gene co-expression networks in human and mouse. PMID:29161290
MeDReaders: a database for transcription factors that bind to methylated DNA. PMID:29145608
A single-cell survey of the small intestinal epithelium. PMID:29144463
Intron retention enhances gene regulatory complexity in vertebrates. PMID:29141666
Organizing combinatorial transcription factor recruitment at cis-regulatory modules. PMID:29105538
Impact of sequencing depth and read length on single cell RNA sequencing data of T cells. PMID:28986563
Transcriptome analysis and identification of significantly differentially expressed genes in Holstein calves subjected to severe thermal stress. PMID:28900747
Navigating the Functional Landscape of Transcription Factors via Non-Negative Tensor Factorization Analysis of MEDLINE Abstracts. PMID:28894735
The Bos taurus-Bos indicus balance in fertility and milk related genes. PMID:28763475
Fusion of Regionally Specified hPSC-Derived Organoids Models Human Brain Development and Interneuron Migration. PMID:28757360
A differential network analysis approach for lineage specifier prediction in stem cell subpopulations. PMID:28725462
GeNNet: an integrated platform for unifying scientific workflows and graph databases for transcriptome data analysis. PMID:28695067
Data for whole and mitochondrial proteome of human embryonic stem cells. PMID:28664172
Transcription Factor Repertoire of Necrotrophic Fungal Phytopathogen Ascochyta rabiei: Predominance of MYB Transcription Factors As Potential Regulators of Secretome. PMID:28659964
Transcriptome analysis reveals similarities between human blood CD3- CD56bright cells and mouse CD127+ innate lymphoid cells. PMID:28615725
Multilineage communication regulates human liver bud development from pluripotency. PMID:28614297
mTFkb: a knowledgebase for fundamental annotation of mouse transcription factors. PMID:28596516
BACH2 immunodeficiency illustrates an association between super-enhancers and haploinsufficiency. PMID:28530713
Wounding induces dedifferentiation of epidermal Gata6+ cells and acquisition of stem cell properties. PMID:28504705
Detecting the Molecular System Signatures of Idiopathic Pulmonary Fibrosis through Integrated Genomic Analysis. PMID:28484236
IGF2 mRNA binding protein 3 (IMP3) promotes glioma cell migration by enhancing the translation of RELA/p65. PMID:28465487
Recognition memory-induced gene expression in the perirhinal cortex: A transcriptomic analysis. PMID:28389337
Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells. PMID:28203701
Protein-Induced Pluripotent Stem Cells Ameliorate Cognitive Dysfunction and Reduce Aβ Deposition in a Mouse Model of Alzheimer's Disease. PMID:28170178
DRNApred, fast sequence-based method that accurately predicts and discriminates DNA- and RNA-binding residues. PMID:28132027
Layer-specific chromatin accessibility landscapes reveal regulatory networks in adult mouse visual cortex. PMID:28112643
Rfx2 Stabilizes Foxj1 Binding at Chromatin Loops to Enable Multiciliated Cell Gene Expression. PMID:28103240
Comprehensive tissue-specific gene set enrichment analysis and transcription factor analysis of breast cancer by integrating 14 gene expression datasets. PMID:28036274
Time Series miRNA-mRNA integrated analysis reveals critical miRNAs and targets in macrophage polarization. PMID:27981970
FOXA1, GATA3 and PPARɣ Cooperate to Drive Luminal Subtype in Bladder Cancer: A Molecular Analysis of Established Human Cell Lines. PMID:27924948
Characterization of genes and pathways that respond to heat stress in Holstein calves through transcriptome analysis. PMID:27848120
CLIP-GENE: a web service of the condition specific context-laid integrative analysis for gene prioritization in mouse TF knockout experiments. PMID:27776539
Genetic backgrounds determine brown remodeling of white fat in rodents. PMID:27689007
Transcriptional Fingerprint of Hypomyelination in Zfp191null and Shiverer (Mbpshi) Mice. PMID:27683878
Geraniol suppresses prostate cancer growth through down-regulation of E2F8. PMID:27683099
Expression-based GWAS identifies variants, gene interactions and key regulators affecting intramuscular fatty acid content and composition in porcine meat. PMID:27666082
The 'heritability' of domestication and its functional partitioning in the pig. PMID:27649617
Frequent hypermethylation of orphan CpG islands with enhancer activity in cancer. PMID:27534853
Disrupted cooperation between transcription factors across diverse cancer types. PMID:27496222
Dissecting direct reprogramming from fibroblast to neuron using single-cell RNA-seq. PMID:27281220
Gene regulation knowledge commons: community action takes care of DNA binding transcription factors. PMID:27270715
A multidimensional network approach reveals microRNAs as determinants of the mesenchymal colorectal cancer subtype. PMID:27157610
Transcription factors in microalgae: genome-wide prediction and comparative analysis. PMID:27067009
Identification of Gene Networks for Residual Feed Intake in Angus Cattle Using Genomic Prediction and RNA-seq. PMID:27019286
Integrative Single-Cell Transcriptomics Reveals Molecular Networks Defining Neuronal Maturation During Postnatal Neurogenesis. PMID:26989163
CSCdb: a cancer stem cells portal for markers, related genes and functional information. PMID:26989154
Genomic structure and marker-derived gene networks for growth and meat quality traits of Brazilian Nelore beef cattle. PMID:26979536
Global analyses of endonucleolytic cleavage in mammals reveal expanded repertoires of cleavage-inducing small RNAs and their targets. PMID:26975654
Transcription Factors Expressed in Mouse Cochlear Inner and Outer Hair Cells. PMID:26974322
MGFD: the maize gene families database. PMID:26896848
Integrative bioinformatic analyses of an oncogenomic profile reveal the biology of endometrial cancer and guide drug discovery. PMID:26716509
Integrative Analysis Reveals the Transcriptional Collaboration between EZH2 and E2F1 in the Regulation of Cancer-Related Gene Expression. PMID:26659825
A human 3'UTR clone collection to study post-transcriptional gene regulation. PMID:26645212
Human cerebral organoids recapitulate gene expression programs of fetal neocortex development. PMID:26644564
MicroRNA expression is altered in lateral septum across reproductive stages. PMID:26592715
Application of Functional Genomics for Bovine Respiratory Disease Diagnostics. PMID:26526746
Changes in correlation between promoter methylation and gene expression in cancer. PMID:26510534
Qualitative and Quantitative Protein Complex Prediction Through Proteome-Wide Simulations. PMID:26492574
Dynamic expression of long noncoding RNAs and repeat elements in synaptic plasticity. PMID:26483626
Human Genes Encoding Transcription Factors and Chromatin-Modifying Proteins Have Low Levels of Promoter Polymorphism: A Study of 1000 Genomes Project Data. PMID:26417590
Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis. PMID:26299571
Understanding the aristolochic acid toxicities in rat kidneys with regulatory networks. PMID:26243830
Scalloped and Yorkie are required for cell cycle re-entry of quiescent cells after tissue damage. PMID:26160905
High-throughput prediction of RNA, DNA and protein binding regions mediated by intrinsic disorder. PMID:26109352
Combined analysis of gene regulatory network and SNV information enhances identification of potential gene markers in mouse knockout studies with small number of samples. PMID:26044212
RPdb: a database of experimentally verified cellular reprogramming records. PMID:26026167
SELPHI: correlation-based identification of kinase-associated networks from global phospho-proteomics data sets. PMID:25948583
Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer. PMID:25910082
A property-based analysis of human transcription factors. PMID:25890365
REGULATOR: a database of metazoan transcription factors and maternal factors for developmental studies. PMID:25880930
Regulatory network inferred using expression data of small sample size: application and validation in erythroid system. PMID:25840044
Deep Sequencing in Microdissected Renal Tubules Identifies Nephron Segment-Specific Transcriptomes. PMID:25817355
Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells. PMID:25792609
Genomic analysis of LPS-stimulated myeloid cells identifies a common pro-inflammatory response but divergent IL-10 anti-inflammatory responses. PMID:25765318
Network representations of immune system complexity. PMID:25625853
Identification of key factors regulating self-renewal and differentiation in EML hematopoietic precursor cells by RNA-sequencing analysis. PMID:25407807
TFClass: a classification of human transcription factors and their rodent orthologs. PMID:25361979
An integrated cell purification and genomics strategy reveals multiple regulators of pancreas development. PMID:25330008
Profiling the transcription factor regulatory networks of human cell types. PMID:25300490
AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors. PMID:25262351
Maize and millet transcription factors annotated using comparative genomic and transcriptomic data. PMID:25261191
An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex. PMID:25186741
Epigenetic landscapes explain partially reprogrammed cells and identify key reprogramming genes. PMID:25122086
Global transcriptome profiling of genes that are differentially regulated during differentiation of mouse embryonic neural stem cells into astrocytes. PMID:25104607
Integrative analysis reveals disease-associated genes and biomarkers for prostate cancer progression. PMID:25080090
Multi-tissue omics analyses reveal molecular regulatory networks for puberty in composite beef cattle. PMID:25048735
CEBPA exerts a specific and biologically important proapoptotic role in pancreatic β cells through its downstream network targets. PMID:24943845
Long noncoding RNAs are spatially correlated with transcription factors and regulate lung development. PMID:24939938
A three step network based approach (TSNBA) to finding disease molecular signature and key regulators: a case study of IL-1 and TNF-alpha stimulated inflammation. PMID:24747419
Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq. PMID:24739965
Genetic basis of olfactory cognition: extremely high level of DNA sequence polymorphism in promoter regions of the human olfactory receptor genes revealed using the 1000 Genomes Project dataset. PMID:24715883
The transcriptome of utricle hair cell regeneration in the avian inner ear. PMID:24599453
Reverse engineering the neuroblastoma regulatory network uncovers MAX as one of the master regulators of tumor progression. PMID:24349289
Metabolite and transcriptome analysis during fasting suggest a role for the p53-Ddit4 axis in major metabolic tissues. PMID:24191950
Axonal transcription factors: novel regulators of growth cone-to-nucleus signaling. PMID:23897628
Purification and characterization of transcription factors. PMID:23832591
Constructing higher-order miRNA-mRNA interaction networks in prostate cancer via hypergraph-based learning. PMID:23782521
Deep mRNA sequencing analysis to capture the transcriptome landscape of zebrafish embryos and larvae. PMID:23700457
Transcription factors that convert adult cell identity are differentially polycomb repressed. PMID:23650565
TFClass: an expandable hierarchical classification of human transcription factors. PMID:23180794 -
AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors
PubMed citations: 140.
140 articles citing: AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors
Single-cell analysis of human basal cell carcinoma reveals novel regulators of tumor growth and the tumor microenvironment. PMID:35687691
Transcriptome Analysis Reveals the Molecular Response to Salinity Challenge in Larvae of the Giant Freshwater Prawn Macrobrachium rosenbergii. PMID:35574435
Evolution of the ErbB gene family and analysis of regulators of Egfr expression during development of the rat spinal cord. PMID:35535900
SMRT sequencing of the full-length transcriptome of Gekko gecko. PMID:35213661
Heterogeneity in endothelial cells and widespread venous arterialization during early vascular development in mammals. PMID:35079138
Full-Length Transcriptome Sequencing of the Scleractinian Coral Montipora foliosa Reveals the Gene Expression Profile of Coral-Zooxanthellae Holobiont. PMID:34943189
Transcriptome Analysis Reveals Sexual Disparities between Olfactory and Immune Gene Expression in the Olfactory Epithelium of Megalobrama amblycephala. PMID:34884822
Proteogenomics of non-small cell lung cancer reveals molecular subtypes associated with specific therapeutic targets and immune evasion mechanisms. PMID:34870237
Epigenetic dynamics shaping melanophore and iridophore cell fate in zebrafish. PMID:34607603
Full-length transcriptome analysis and identification of transcript structures in Eimeria necatrix from different developmental stages by single-molecule real-time sequencing. PMID:34579769
Revelation of candidate genes and molecular mechanism of reproductive seasonality in female rohu (Labeo rohita Ham.) by RNA sequencing. PMID:34548034
PacBio Single-Molecule Long-Read Sequencing Provides New Light on the Complexity of Full-Length Transcripts in Cattle. PMID:34527015
Massively parallel in vivo CRISPR screening identifies RNF20/40 as epigenetic regulators of cardiomyocyte maturation. PMID:34290256
Heterogeneity of neurons reprogrammed from spinal cord astrocytes by the proneural factors Ascl1 and Neurogenin2. PMID:34289357
Full-length transcriptome assembly of andrias davidianus (amphibia: caudata) skin via hybrid sequencing. PMID:34282833
Characterization and complexity of transcriptome in Gymnocypris przewalskii using single-molecule long-read sequencing and RNA-seq. PMID:33989386
Comparative transcriptome analysis of the newly discovered insect vector of the pine wood nematode in China, revealing putative genes related to host plant adaptation. PMID:33726671
Genome-Wide Integrated Analysis Revealed Functions of lncRNA-miRNA-mRNA Interaction in Growth of Intermuscular Bones in Megalobrama amblycephala. PMID:33614620
Inference of phenotype-relevant transcriptional regulatory networks elucidates cancer type-specific regulatory mechanisms in a pan-cancer study. PMID:33558504
Systematic analysis of purified astrocytes after SCI unveils Zeb2os function during astrogliosis. PMID:33535036
Identifying Candidate Genes Involved in the Regulation of Early Growth Using Full-Length Transcriptome and RNA-Seq Analyses of Frontal and Parietal Bones and Vertebral Bones in Bighead Carp (Hypophthalmichthys nobilis). PMID:33519908
The PacBio Full-Length Transcriptome of the Tea Aphid as a Reference Resource. PMID:33304379
Conserved Epigenetic Regulatory Logic Infers Genes Governing Cell Identity. PMID:33278344
Tgfb3 and Mmp13 regulated the initiation of liver fibrosis progression as dynamic network biomarkers. PMID:33269546
Murine interfollicular epidermal differentiation is gradualistic with GRHL3 controlling progression from stem to transition cell states. PMID:33116143
Developmental Gene Expression Differences between Humans and Mammalian Models. PMID:33113372
Single-cell transcriptomics identifies divergent developmental lineage trajectories during human pituitary development. PMID:33077725
Multiple Isolated Transcription Factors Act as Switches and Contribute to Species Uniqueness. PMID:33003522
Characterization and analysis of full-length transcriptomes from two grasshoppers, Gomphocerus licenti and Mongolotettix japonicus. PMID:32848169
Analysis of Ugandan cervical carcinomas identifies human papillomavirus clade-specific epigenome and transcriptome landscapes. PMID:32747824
PacBio single molecule long-read sequencing provides insight into the complexity and diversity of the Pinctada fucata martensii transcriptome. PMID:32660426
SMRT sequencing of the full-length transcriptome of the white-backed planthopper Sogatella furcifera. PMID:32551204
SMRT sequencing of the full-length transcriptome of the Rhynchophorus ferrugineus (Coleoptera: Curculionidae). PMID:32509454
The Msi1-mTOR pathway drives the pathogenesis of mammary and extramammary Paget's disease. PMID:32457396
Identifying Cattle Breed-Specific Partner Choice of Transcription Factors during the African Trypanosomiasis Disease Progression Using Bioinformatics Analysis. PMID:32456126
Endoplasmic reticulum stress actively suppresses hepatic molecular identity in damaged liver. PMID:32407006
Transcriptome profiling of developing testes and spermatogenesis in the Mongolian horse. PMID:32345215
Full-length transcriptome sequencing and comparative transcriptomic analysis to uncover genes involved in early gametogenesis in the gonads of Amur sturgeon (Acipenser schrenckii). PMID:32308726
Deciphering Master Gene Regulators and Associated Networks of Human Mesenchymal Stromal Cells. PMID:32260546
Insights into the Synthesis, Secretion and Curing of Barnacle Cyprid Adhesive via Transcriptomic and Proteomic Analyses of the Cement Gland. PMID:32244485
Immediate Adaptation Analysis Implicates BCL6 as an EGFR-TKI Combination Therapy Target in NSCLC. PMID:32234966
Embryonic endothelial evolution towards first hematopoietic stem cells revealed by single-cell transcriptomic and functional analyses. PMID:32203131
Defining Epidermal Basal Cell States during Skin Homeostasis and Wound Healing Using Single-Cell Transcriptomics. PMID:32187560
Molecular Analysis of UV-C Induced Resveratrol Accumulation in Polygonum cuspidatum Leaves. PMID:31817915
Full-Length Transcriptome Survey and Expression Analysis of Parasitoid Wasp Chouioia cunea upon Exposure to 1-Dodecene. PMID:31796851
Differential co-expression-based detection of conditional relationships in transcriptional data: comparative analysis and application to breast cancer. PMID:31727119
Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis. PMID:31722201
KnockTF: a comprehensive human gene expression profile database with knockdown/knockout of transcription factors. PMID:31598675
Resolving the fibrotic niche of human liver cirrhosis at single-cell level. PMID:31597160
Single-Cell Transcriptomics Reveals Spatial and Temporal Turnover of Keratinocyte Differentiation Regulators. PMID:31552090
ApicoTFdb: the comprehensive web repository of apicomplexan transcription factors and transcription-associated co-factors. PMID:31529106
Reconstruction and Analysis of Gene Networks of Human Neurotransmitter Systems Reveal Genes with Contentious Manifestation for Anxiety, Depression, and Intellectual Disabilities. PMID:31514272
Integrated analysis of 10 lymphoma datasets identifies E2F8 as a key regulator in Burkitt's lymphoma and mantle cell lymphoma. PMID:31396343
Global Mapping of H3K4 Trimethylation (H3K4me3) and Transcriptome Analysis Reveal Genes Involved in the Response to Epidemic Diarrhea Virus Infections in Pigs. PMID:31382472
A Single-Cell Transcriptomic Atlas of Human Neocortical Development during Mid-gestation. PMID:31303374
Core transcriptional signatures of phase change in the migratory locust. PMID:31292921
Single-cell RNA-seq highlights intra-tumoral heterogeneity and malignant progression in pancreatic ductal adenocarcinoma. PMID:31273297
Pigeon foot feathering reveals conserved limb identity networks. PMID:31247188
Gene expression across mammalian organ development. PMID:31243369
Deep transcriptome analysis using RNA-Seq suggests novel insights into molecular aspects of fat-tail metabolism in sheep. PMID:31235755
Computational identification of tissue-specific transcription factor cooperation in ten cattle tissues. PMID:31095599
Enhancer Chromatin and 3D Genome Architecture Changes from Naive to Primed Human Embryonic Stem Cell States. PMID:31056477
PITX2 enhances progression of lung adenocarcinoma by transcriptionally regulating WNT3A and activating Wnt/β-catenin signaling pathway. PMID:31043858
Systems Biology Reveals NR2F6 and TGFB1 as Key Regulators of Feed Efficiency in Beef Cattle. PMID:30967894
An integrative method to predict signalling perturbations for cellular transitions. PMID:30949696
Geometric characterisation of disease modules. PMID:30839777
hsa-miR-301a- and SOX10-dependent miRNA-TF-mRNA regulatory circuits in breast cancer. PMID:30814872
Bioinformatics analyses of differentially expressed genes associated with spinal cord injury: A microarray-based analysis in a mouse model. PMID:30804258
Identification and Expression Analysis of Long Noncoding RNAs in Fat-Tail of Sheep Breeds. PMID:30787031
Single-cell analysis reveals fibroblast heterogeneity and myeloid-derived adipocyte progenitors in murine skin wounds. PMID:30737373
Specification of diverse cell types during early neurogenesis of the mouse cerebellum. PMID:30735127
RNA-Seq Signatures Normalized by mRNA Abundance Allow Absolute Deconvolution of Human Immune Cell Types. PMID:30726743
Leveraging chromatin accessibility for transcriptional regulatory network inference in T Helper 17 Cells. PMID:30696696
Pregnancy Epigenetic Signature in T Helper 17 and T Regulatory Cells in Multiple Sclerosis. PMID:30671056
Quantitative Clonal Analysis and Single-Cell Transcriptomics Reveal Division Kinetics, Hierarchy, and Fate of Oral Epithelial Progenitor Cells. PMID:30472156
RNA sequencing-based transcriptomic profiles of embryonic lens development for cataract gene discovery. PMID:30417254
Single cell transcriptome analysis of human, marmoset and mouse embryos reveals common and divergent features of preimplantation development. PMID:30413530
Single-cell analyses identify distinct and intermediate states of zebrafish pancreatic islet development. PMID:30407522
Dual-center, dual-platform microRNA profiling identifies potential plasma biomarkers of adult temporal lobe epilepsy. PMID:30396857
Integrated Epigenetic Mapping of Human and Mouse Salivary Gene Regulation. PMID:30392435
Integrating Transcriptome and Experiments Reveals the Anti-diabetic Mechanism of Cyclocarya paliurus Formula. PMID:30388616
Proteome-transcriptome analysis and proteome remodeling in mouse lens epithelium and fibers. PMID:30359574
Genome-wide analyses reveal the IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation. PMID:30355343
Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation. PMID:30239706
A comprehensive manually-curated compendium of bovine transcription factors. PMID:30213987
AnimalTFDB 3.0: a comprehensive resource for annotation and prediction of animal transcription factors. PMID:30204897
Differential Co-expression and Regulatory Network Analysis Uncover the Relapse Factor and Mechanism of T Cell Acute Leukemia. PMID:30195757
An Adult Zebrafish Model Reveals that Mucormycosis Induces Apoptosis of Infected Macrophages. PMID:30143654
Investigating the Molecular Mechanism of Aqueous Extract of Cyclocarya paliurus on Ameliorating Diabetes by Transcriptome Profiling. PMID:30140229
Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors. PMID:30093597
Ultrahigh thermal conductivity confirmed in boron arsenide. PMID:30093587
A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte. PMID:30069046
Single-cell RNA-seq uncovers dynamic processes and critical regulators in mouse spermatogenesis. PMID:30061742
Gene expression profiles of germ-free and conventional piglets from the same litter. PMID:30013139
Integrated multifactor analysis explores core dysfunctional modules in autism spectrum disorder. PMID:29989084
dbLGL: an online leukemia gene and literature database for the retrospective comparison of adult and childhood leukemia genetics with literature evidence. PMID:29961819
Leukemia cell-derived microvesicles induce T cell exhaustion via miRNA delivery. PMID:29900066
A comprehensive spatial-temporal transcriptomic analysis of differentiating nascent mouse lens epithelial and fiber cells. PMID:29883638
Computational approaches for predicting key transcription factors in targeted cell reprogramming (Review). PMID:29845286
The latent geometry of the human protein interaction network. PMID:29635317
Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing. PMID:29622030
Single-cell RNA-seq analysis unveils a prevalent epithelial/mesenchymal hybrid state during mouse organogenesis. PMID:29540203
Transcriptome variations among human embryonic stem cell lines are associated with their differentiation propensity. PMID:29444173
scEpath: energy landscape-based inference of transition probabilities and cellular trajectories from single-cell transcriptomic data. PMID:29415263
Coordination of olfactory receptor choice with guidance receptor expression and function in olfactory sensory neurons. PMID:29385124
Integrated analysis of single-cell embryo data yields a unified transcriptome signature for the human pre-implantation epiblast. PMID:29361568
Transcription Factor and lncRNA Regulatory Networks Identify Key Elements in Lung Adenocarcinoma. PMID:29303984
Integrated analysis of motif activity and gene expression changes of transcription factors. PMID:29233921
Cellular reprogramming dynamics follow a simple 1D reaction coordinate. PMID:29211687
CrusTF: a comprehensive resource of transcriptomes for evolutionary and functional studies of crustacean transcription factors. PMID:29178828
Early Transcriptional Divergence Marks Virus-Specific Primary Human CD8+ T Cells in Chronic versus Acute Infection. PMID:29045899
Database Resources of the BIG Data Center in 2018. PMID:29036542
A Unique TGFB1-Driven Genomic Program Links Astrocytosis, Low-Grade Inflammation and Partial Demyelination in Spinal Cord Periplaques from Progressive Multiple Sclerosis Patients. PMID:28981455
dbCoRC: a database of core transcriptional regulatory circuitries modeled by H3K27ac ChIP-seq signals. PMID:28977473
Relating protein functional diversity to cell type number identifies genes that determine dynamic aspects of chromatin organisation as potential contributors to organismal complexity. PMID:28945800
The dynamic landscape of gene regulation during Bombyx mori oogenesis. PMID:28893182
The landscape of DNA methylation-mediated regulation of long non-coding RNAs in breast cancer. PMID:28881636
Human Primary Bone Marrow Mesenchymal Stromal Cells and Their in vitro Progenies Display Distinct Transcriptional Profile Signatures. PMID:28871088
Sex chromosomes drive gene expression and regulatory dimorphisms in mouse embryonic stem cells. PMID:28818098
Transcriptome analysis reveals similarities between human blood CD3- CD56bright cells and mouse CD127+ innate lymphoid cells. PMID:28615725
mTFkb: a knowledgebase for fundamental annotation of mouse transcription factors. PMID:28596516
The NANCI-Nkx2.1 gene duplex buffers Nkx2.1 expression to maintain lung development and homeostasis. PMID:28546511
A novel epigenetic AML1-ETO/THAP10/miR-383 mini-circuitry contributes to t(8;21) leukaemogenesis. PMID:28539478
Molecular codes for cell type specification in Brn3 retinal ganglion cells. PMID:28465430
Evidence for a Strong Correlation Between Transcription Factor Protein Disorder and Organismic Complexity. PMID:28430951
SCODE: an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation. PMID:28379368
Cross-Species Genome-Wide Identification of Evolutionary Conserved MicroProteins. PMID:28338802
Identification of crucial genes associated with rat traumatic spinal cord injury. PMID:28260098
DRNApred, fast sequence-based method that accurately predicts and discriminates DNA- and RNA-binding residues. PMID:28132027
Large-scale mapping of mammalian transcriptomes identifies conserved genes associated with different cell states. PMID:27980097
ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data. PMID:27924033
TcoF-DB v2: update of the database of human and mouse transcription co-factors and transcription factor interactions. PMID:27789689
Ligand Independent and Subtype-Selective Actions of Thyroid Hormone Receptors in Human Adipose Derived Stem Cells. PMID:27732649
Male-Specific Transcription Factor Occupancy Alone Does Not Account for Differential Methylation at Imprinted Genes in the mouse Germ Cell Lineage. PMID:27694116
Single-cell analyses of X Chromosome inactivation dynamics and pluripotency during differentiation. PMID:27486082
Laser capture microscopy coupled with Smart-seq2 for precise spatial transcriptomic profiling. PMID:27387371
SM-TF: A structural database of small molecule-transcription factor complexes. PMID:27010673
Prediction of the molecular mechanisms and potential therapeutic targets for diabetic nephropathy by bioinformatics methods. PMID:26986014
Transcription factor and miRNA co-regulatory network reveals shared and specific regulators in the development of B cell and T cell. PMID:26487345
MiRNA and TF co-regulatory network analysis for the pathology and recurrence of myocardial infarction. PMID:25867756 - http://dx.doi.org/10.1093/nar/gku887
Tags:
Tags
More detailed information about this field from each metasource.
annotation
metasource: Fairsharing.org
version: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
binding motif
metasource: Fairsharing.org
version: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene ontology enrichment
metasource: Fairsharing.org
version: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene feature
metasource: Fairsharing.org
version: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
micro rna
metasource: Fairsharing.org
version: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
molecular interaction
metasource: Fairsharing.org
version: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
orthologous
metasource: Fairsharing.org
version: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
paralogous
metasource: Fairsharing.org
version: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein interaction
metasource: Fairsharing.org
version: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein structure
metasource: Fairsharing.org
version: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
transcription factor
metasource: Fairsharing.org
version: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
nucleotide sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
transcriptional regulator sites and transcription factors
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
transcription factors and regulatory sites
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:09.858616
gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:09.858616
gene transcripts
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:09.858616
animal study
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:09.858616
Tags
More detailed information about this field from each metasource.
annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
binding motif
metasource: Fairsharing.orgversion: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene ontology enrichment
metasource: Fairsharing.orgversion: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene feature
metasource: Fairsharing.orgversion: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
micro rna
metasource: Fairsharing.orgversion: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
molecular interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
orthologous
metasource: Fairsharing.orgversion: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
paralogous
metasource: Fairsharing.orgversion: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein structure
metasource: Fairsharing.orgversion: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
transcription factor
metasource: Fairsharing.orgversion: FAIRsharing.org: AnimalTFDB; Animal Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.e65js; Last edited: March 15, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
nucleotide sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
transcriptional regulator sites and transcription factors
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
transcription factors and regulatory sites
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:09.858616
gene expression
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:09.858616
gene transcripts
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:09.858616
animal study
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:09.858616
binding motif gene gene ontology enrichment gene feature micro rna molecular interaction orthology paralogous protein interaction protein structure transcription nucleic acid sequence transcription transcription factors and regulatory sites gene expression gene transcripts animal study
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