Yeast Searching for Transcriptional Regulators and Consensus Tracking
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Yeast Searching for Transcriptional Regulators and Consensus Tracking
metasource: Fairsharing.org
version: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
YEASTRACT
metasource: Fairsharing.org
version: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:01.788002
yeastract
metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:01.788002
Names
More detailed information about this field from each metasource.
Yeast Searching for Transcriptional Regulators and Consensus Tracking
metasource: Fairsharing.orgversion: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
YEASTRACT
metasource: Fairsharing.orgversion: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:01.788002
yeastract
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:25:01.788002
Other names: YEASTRACT, yeastract
Names
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Yeast Searching for Transcriptional Regulators and Consensus Tracking
metasource: Fairsharing.orgversion: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
YEASTRACT
metasource: Fairsharing.orgversion: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:01.788002
yeastract
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:25:01.788002
YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking) is a curated repository of more than 48333 regulatory associations between transcription factors (TF) and target genes in Saccharomyces cerevisiae, based on more than 1200 bibliographic references.
Description
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YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking) is a curated repository of more than 48333 regulatory associations between transcription factors (TF) and target genes in Saccharomyces cerevisiae, based on more than 1200 bibliographic references.
metasource: Fairsharing.orgversion: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
The YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking; http://www.yeastract.com) database is a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae. This database is a repository of more than 12000 regulatory associations between transcription factors and target genes, based on experimental evidence which were spread throughout more than 850 bibliographic references. It also includes more than 250 specific DNA binding sites for more than a hundred characterized transcription factors. Further information about each yeast gene included in the database was obtained from Saccharomyces Genome Database (SGD), Regulatory Sequences Analysis Tools (RSAT) and Gene Ontology (GO) Consortium. Computational tools are also provided to facilitate the exploitation of the gathered data when solving a number of biological questions as exemplified in the Tutorial also available on the system. YEASTRACT allows the identification of documented or potential transcription regulators of a given gene and of documented or potential regulons for each transcription factor. It also renders possible the comparison between DNA motifs, such as those found to be over-represented in the promoter regions of co-regulated genes, and the transcription factor binding sites described in the literature. The system also provides an useful mechanism for grouping a list of genes (for instance a set of genes with similar expression profiles as revealed by microarray analysis) based on their regulatory associations with known transcription factors.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
The YEAst Search for Transcriptional Regulators And Consensus Tracking is a curated repository of regulatory associations between transcription factors (TF) and target genes in Saccharomyces cerevisiae. It includes DISCOVERER and allows the identification of documented or potential transcription regulators of a given gene and of documented or potential regulons for each transcription factor.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:25:01.788002
Webpage:
http://www.yeastract.comWebpage
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http://www.yeastract.com
metasource: Fairsharing.orgversion: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:01.788002
http://www.yeastract.com/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Licence:
Name: YEASTRACT Attribution requiredLicence name
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YEASTRACT Attribution required
metasource: Fairsharing.orgversion: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Licence URL
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http://www.yeastract.com/cite.php
metasource: Fairsharing.orgversion: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications:
Publications
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The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae
PMID: 16381908
metasource: Fairsharing.org
version: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
PMID: 24170807
metasource: Fairsharing.org
version: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface
PMID: 20972212
metasource: Fairsharing.org
version: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:01.788002
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae
PMID: 18032429
metasource: Fairsharing.org
version: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1093/nar/gkt1015
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae
PMID: 16381908
metasource: Fairsharing.org
version: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
PMID: 24170807
metasource: Fairsharing.org
version: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface
PMID: 20972212
metasource: Fairsharing.org
version: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:01.788002
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae
PMID: 18032429
metasource: Fairsharing.org
version: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1093/nar/gkt1015
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae
PubMed citations: 212.
212 articles citing: The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae
Evolution of transcription factor binding through sequence variations and turnover of binding sites. PMID:35618416
Prediction of Gene and Genomic Regulation in Candida Species, Using the PathoYeastract Database: A Comparative Genomics Approach. PMID:35524130
Inferring Causation in Yeast Gene Association Networks With Kernel Logistic Regression. PMID:35173404
A Hierarchical Transcriptional Regulatory Network Required for Long-Term Thermal Stress Tolerance in an Industrial Saccharomyces cerevisiae Strain. PMID:35118059
Glucose starvation induces a switch in the histone acetylome for activation of gluconeogenic and fat metabolism genes. PMID:34995509
Differences in evolutionary accessibility determine which equally effective regulatory motif evolves to generate pulses. PMID:34740240
Crystal structure of the complex of DNA with the C-terminal domain of TYE7 from Saccharomyces cerevisiae. PMID:34605438
A phosphatase-centric mechanism drives stress signaling response. PMID:34558777
Reasons for 2-furaldehyde and 5-hydroxymethyl-2-furaldehyde resistance in Saccharomyces cerevisiae: current state of knowledge and perspectives for further improvements. PMID:33830300
Functional and transcriptional profiling of non-coding RNAs in yeast reveal context-dependent phenotypes and in trans effects on the protein regulatory network. PMID:33493158
Elucidating the regulatory mechanism of Swi1 prion in global transcription and stress responses. PMID:33318504
Assessing regulatory features of the current transcriptional network of Saccharomyces cerevisiae. PMID:33082399
Promoter Architecture and Promoter Engineering in Saccharomyces cerevisiae. PMID:32781665
Pathway-based signature transcriptional profiles as tolerance phenotypes for the adapted industrial yeast Saccharomyces cerevisiae resistant to furfural and HMF. PMID:32103314
YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts. PMID:31586406
The role of structural pleiotropy and regulatory evolution in the retention of heteromers of paralogs. PMID:31454312
Cellular response to moderate chromatin architectural defects promotes longevity. PMID:31309140
Boolean gene regulatory network model of centromere function in Saccharomyces cerevisiae. PMID:31175490
Genome-wide analysis of yeast expression data based on a priori generated co-regulation cliques. PMID:30854393
Linking genetic, metabolic, and phenotypic diversity among Saccharomyces cerevisiae strains using multi-omics associations. PMID:30715293
Saccharomyces cerevisiae Cytosolic Thioredoxins Control Glycolysis, Lipid Metabolism, and Protein Biosynthesis under Wine-Making Conditions. PMID:30683739
Multi-study inference of regulatory networks for more accurate models of gene regulation. PMID:30677040
Decoupling the Variances of Heterosis and Inbreeding Effects Is Evidenced in Yeast's Life-History and Proteomic Traits. PMID:30509954
GEsture: an online hand-drawing tool for gene expression pattern search. PMID:29942676
MAL73, a novel regulator of maltose fermentation, is functionally impaired by single nucleotide polymorphism in sake brewing yeast. PMID:29894505
Automated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cells. PMID:29745848
Condition-Specific Modeling of Biophysical Parameters Advances Inference of Regulatory Networks. PMID:29641998
A semi-synthetic regulon enables rapid growth of yeast on xylose. PMID:29581426
Ixr1 Regulates Ribosomal Gene Transcription and Yeast Response to Cisplatin. PMID:29449612
Integrating transcriptional activity in genome-scale models of metabolism. PMID:29322933
Transcriptional Response to Lactic Acid Stress in the Hybrid Yeast Zygosaccharomyces parabailii. PMID:29269498
YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae. PMID:29036684
fastBMA: scalable network inference and transitive reduction. PMID:29020744
Rapid functional and evolutionary changes follow gene duplication in yeast. PMID:28835561
Three distinct mechanisms of long-distance modulation of gene expression in yeast. PMID:28426659
Yeast response and tolerance to benzoic acid involves the Gcn4- and Stp1-regulated multidrug/multixenobiotic resistance transporter Tpo1. PMID:28409382
Engineering microbial phenotypes through rewiring of genetic networks. PMID:28369627
Construction and evaluation of yeast expression networks by database-guided predictions. PMID:28357360
The Zygosaccharomyces bailii transcription factor Haa1 is required for acetic acid and copper stress responses suggesting subfunctionalization of the ancestral bifunctional protein Haa1/Cup2. PMID:28086780
Network Centrality Analysis in Fungi Reveals Complex Regulation of Lost and Gained Genes. PMID:28046110
A prior-based integrative framework for functional transcriptional regulatory network inference. PMID:27794550
Inference of gene regulation functions from dynamic transcriptome data. PMID:27652904
The PathoYeastract database: an information system for the analysis of gene and genomic transcription regulation in pathogenic yeasts. PMID:27625390
Investigating the Combinatory Effects of Biological Networks on Gene Co-expression. PMID:27445830
A comparative evaluation of data-merging and meta-analysis methods for reconstructing gene-gene interactions. PMID:27294826
Comprehensive Analysis of the SUL1 Promoter of Saccharomyces cerevisiae. PMID:26936925
Microarray Analysis of Gene Expression in Saccharomyces cerevisiae kap108Δ Mutants upon Addition of Oxidative Stress. PMID:26888869
From System-Wide Differential Gene Expression to Perturbed Regulatory Factors: A Combinatorial Approach. PMID:26562430
Adaptation to High Ethanol Reveals Complex Evolutionary Pathways. PMID:26545090
A Comprehensive Analysis of Replicative Lifespan in 4,698 Single-Gene Deletion Strains Uncovers Conserved Mechanisms of Aging. PMID:26456335
TRX-LOGOS - a graphical tool to demonstrate DNA information content dependent upon backbone dynamics in addition to base sequence. PMID:26413153
Genomic expression program of Saccharomyces cerevisiae along a mixed-culture wine fermentation with Hanseniaspora guilliermondii. PMID:26314747
Comprehensive genome-wide transcription factor analysis reveals that a combination of high affinity and low affinity DNA binding is needed for human gene regulation. PMID:26099425
Comprehensive Temporal Protein Dynamics during the Diauxic Shift in Saccharomyces cerevisiae. PMID:26077900
Repression of the Low Affinity Iron Transporter Gene FET4: A NOVEL MECHANISM AGAINST CADMIUM TOXICITY ORCHESTRATED BY YAP1 VIA ROX1. PMID:26063801
A Systems Approach to Elucidate Heterosis of Protein Abundances in Yeast. PMID:25971257
Inferring causal metabolic signals that regulate the dynamic TORC1-dependent transcriptome. PMID:25888284
Deconstructing the genetic basis of spent sulphite liquor tolerance using deep sequencing of genome-shuffled yeast. PMID:25866561
Correcting positional correlations in Affymetrix® genome chips. PMID:25767049
eIF2 kinases mediate β-lapachone toxicity in yeast and human cancer cells. PMID:25590579
A regulatory similarity measure using the location information of transcription factor binding sites in Saccharomyces cerevisiae. PMID:25560196
Nitric oxide-mediated antioxidative mechanism in yeast through the activation of the transcription factor Mac1. PMID:25423296
Pulsatile dynamics in the yeast proteome. PMID:25220054
De-novo learning of genome-scale regulatory networks in S. cerevisiae. PMID:25215507
State transitions in the TORC1 signaling pathway and information processing in Saccharomyces cerevisiae. PMID:25085507
A dedicated database system for handling multi-level data in systems biology. PMID:25053973
Genetic architecture of ethanol-responsive transcriptome variation in Saccharomyces cerevisiae strains. PMID:24970865
Scale-space measures for graph topology link protein network architecture to function. PMID:24931989
Network-dosage compensation topologies as recurrent network motifs in natural gene networks. PMID:24929807
Cell cycle-regulated transcription: effectively using a genomics toolbox. PMID:24906306
MFS transporters required for multidrug/multixenobiotic (MD/MX) resistance in the model yeast: understanding their physiological function through post-genomic approaches. PMID:24847282
Fast Bayesian inference for gene regulatory networks using ScanBMA. PMID:24742092
An ensemble approach to the evolution of complex systems. PMID:24736159
Systems biology as an integrated platform for bioinformatics, systems synthetic biology, and systems metabolic engineering. PMID:24709875
Inferring functional transcription factor-gene binding pairs by integrating transcription factor binding data with transcription factor knockout data. PMID:24565265
Integration of transcription and flux data reveals molecular paths associated with differences in oxygen-dependent phenotypes of Saccharomyces cerevisiae. PMID:24528924
Topology and control of the cell-cycle-regulated transcriptional circuitry. PMID:24395825
Metabolic constraint-based refinement of transcriptional regulatory networks. PMID:24348226
Molecular mechanisms of system responses to novel stimuli are predictable from public data. PMID:24185701
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae. PMID:24170807
LoQAtE--Localization and Quantitation ATlas of the yeast proteomE. A new tool for multiparametric dissection of single-protein behavior in response to biological perturbations in yeast. PMID:24150937
Integrated module and gene-specific regulatory inference implicates upstream signaling networks. PMID:24146602
The genome-wide early temporal response of Saccharomyces cerevisiae to oxidative stress induced by cumene hydroperoxide. PMID:24073228
Dissociation of the H3K36 demethylase Rph1 from chromatin mediates derepression of environmental stress-response genes under genotoxic stress in Saccharomyces cerevisiae. PMID:23985319
Genome-wide single-cell-level screen for protein abundance and localization changes in response to DNA damage in S. cerevisiae. PMID:23935119
Agp2, a member of the yeast amino acid permease family, positively regulates polyamine transport at the transcriptional level. PMID:23755272
The effect of an intervening promoter nucleosome on gene expression. PMID:23700413
The PhosphoGRID Saccharomyces cerevisiae protein phosphorylation site database: version 2.0 update. PMID:23674503
Candida glabrata drug:H+ antiporter CgQdr2 confers imidazole drug resistance, being activated by transcription factor CgPdr1. PMID:23629708
Acetyl-CoA induces transcription of the key G1 cyclin CLN3 to promote entry into the cell division cycle in Saccharomyces cerevisiae. PMID:23589851
Statistical analysis reveals co-expression patterns of many pairs of genes in yeast are jointly regulated by interacting loci. PMID:23555313
Temporal system-level organization of the switch from glycolytic to gluconeogenic operation in yeast. PMID:23549479
Heritable remodeling of yeast multicellularity by an environmentally responsive prion. PMID:23540696
Accounting for non-genetic factors by low-rank representation and sparse regression for eQTL mapping. PMID:23419377
Branching process deconvolution algorithm reveals a detailed cell-cycle transcription program. PMID:23388635
Candidate target genes for the Saccharomyces cerevisiae transcription factor, Yap2. PMID:23334931
Identification of the molecular mechanisms underlying the cytotoxic action of a potent platinum metallointercalator. PMID:23226166
NetwoRx: connecting drugs to networks and phenotypes in Saccharomyces cerevisiae. PMID:23203867
Regulatory network structure as a dominant determinant of transcription factor evolutionary rate. PMID:23093926
RACK1/Asc1p, a ribosomal node in cellular signaling. PMID:23071099
Direct vs 2-stage approaches to structured motif finding. PMID:22908910
Integrating external biological knowledge in the construction of regulatory networks from time-series expression data. PMID:22898396
Why transcription factor binding sites are ten nucleotides long. PMID:22887818
Impact of assimilable nitrogen availability in glucose uptake kinetics in Saccharomyces cerevisiae during alcoholic fermentation. PMID:22846176
One Hand Clapping: detection of condition-specific transcription factor interactions from genome-wide gene activity data. PMID:22844089
A model-based method for gene dependency measurement. PMID:22829898
Quantitative- and phospho-proteomic analysis of the yeast response to the tyrosine kinase inhibitor imatinib to pharmacoproteomics-guided drug line extension. PMID:22775238
Low level genome mistranslations deregulate the transcriptome and translatome and generate proteotoxic stress in yeast. PMID:22715922
Perturbation-based analysis and modeling of combinatorial regulation in the yeast sulfur assimilation pathway. PMID:22696683
The role of the Yap5 transcription factor in remodeling gene expression in response to Fe bioavailability. PMID:22616008
Regulatory Snapshots: integrative mining of regulatory modules from expression time series and regulatory networks. PMID:22563474
Yeast toxicogenomics: genome-wide responses to chemical stresses with impact in environmental health, pharmacology, and biotechnology. PMID:22529852
Prediction of phenotype-associated genes via a cellular network approach: a Candida albicans infection case study. PMID:22509408
Identification of an Hsp90 mutation that selectively disrupts cAMP/PKA signaling in Saccharomyces cerevisiae. PMID:22461145
Yap1: a DNA damage responder in Saccharomyces cerevisiae. PMID:22433435
Integrating phosphorylation network with transcriptional network reveals novel functional relationships. PMID:22432002
A potent plant-derived antifungal acetylenic acid mediates its activity by interfering with fatty acid homeostasis. PMID:22430960
DNA-protein interactions: methods for detection and analysis. PMID:22399265
Transparent mediation-based access to multiple yeast data sources using an ontology driven interface. PMID:22372975
Molecular characterization of the putative transcription factor SebA involved in virulence in Aspergillus fumigatus. PMID:22345349
The functional consequences of relative substrate specificity in complex biochemical systems. PMID:22303360
Joint modelling of confounding factors and prominent genetic regulators provides increased accuracy in genetical genomics studies. PMID:22241974
Statistical properties and robustness of biological controller-target networks. PMID:22235289
YeTFaSCo: a database of evaluated yeast transcription factor sequence specificities. PMID:22102575
Transcriptional regulation in Saccharomyces cerevisiae: transcription factor regulation and function, mechanisms of initiation, and roles of activators and coactivators. PMID:22084422
Construction of regulatory networks using expression time-series data of a genotyped population. PMID:22084118
Transcriptional regulation and the diversification of metabolism in wine yeast strains. PMID:22042577
How yeast re-programmes its transcriptional profile in response to different nutrient impulses. PMID:21943358
The yeast ABC transporter Pdr18 (ORF YNR070w) controls plasma membrane sterol composition, playing a role in multidrug resistance. PMID:21831043
Integrating multiple types of data to predict novel cell cycle-related genes. PMID:21689484
Regulatory link mapping between organisms. PMID:21689479
Learning transcriptional regulation on a genome scale: a theoretical analysis based on gene expression data. PMID:21622543
Emergence of switch-like behavior in a large family of simple biochemical networks. PMID:21589886
Identification of a DNA-binding site for the transcription factor Haa1, required for Saccharomyces cerevisiae response to acetic acid stress. PMID:21586585
Converging evidence of mitochondrial dysfunction in a yeast model of homocysteine metabolism imbalance. PMID:21504896
LLM3D: a log-linear modeling-based method to predict functional gene regulatory interactions from genome-wide expression data. PMID:21422075
Decreased secretion and unfolded protein response upregulation. PMID:21329804
The marine sponge-derived polyketide endoperoxide plakortide F acid mediates its antifungal activity by interfering with calcium homeostasis. PMID:21300833
Joint genetic analysis of gene expression data with inferred cellular phenotypes. PMID:21283789
New insight into the role of the Cdc34 ubiquitin-conjugating enzyme in cell cycle regulation via Ace2 and Sic1. PMID:21196523
Misfolded proteins impose a dosage-dependent fitness cost and trigger a cytosolic unfolded protein response in yeast. PMID:21187411
Whole genome sequencing of Saccharomyces cerevisiae: from genotype to phenotype for improved metabolic engineering applications. PMID:21176163
Predicting DNA-binding specificities of eukaryotic transcription factors. PMID:21152420
Cell cycle sensing of oxidative stress in Saccharomyces cerevisiae by oxidation of a specific cysteine residue in the transcription factor Swi6p. PMID:21147769
Unraveling condition-dependent networks of transcription factors that control metabolic pathway activity in yeast. PMID:21119627
Comparative transcriptome profiling analyses during the lag phase uncover YAP1, PDR1, PDR3, RPN4, and HSF1 as key regulatory genes in genomic adaptation to the lignocellulose derived inhibitor HMF for Saccharomyces cerevisiae. PMID:21106074
Extensive role of the general regulatory factors, Abf1 and Rap1, in determining genome-wide chromatin structure in budding yeast. PMID:21081559
Genome-wide identification of Saccharomyces cerevisiae genes required for tolerance to acetic acid. PMID:20973990
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface. PMID:20972212
Comparative study of discretization methods of microarray data for inferring transcriptional regulatory networks. PMID:20955620
Genomic expression program involving the Haa1p-regulon in Saccharomyces cerevisiae response to acetic acid. PMID:20955010
Adaptive response and tolerance to weak acids in Saccharomyces cerevisiae: a genome-wide view. PMID:20955006
Hal4 and Hal5 protein kinases are required for general control of carbon and nitrogen uptake and metabolism. PMID:20952580
Toward a complete in silico, multi-layered embryonic stem cell regulatory network. PMID:20890967
Activation of two different resistance mechanisms in Saccharomyces cerevisiae upon exposure to octanoic and decanoic acids. PMID:20851956
Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach. PMID:20587029
Uga3 and Uga35/Dal81 transcription factors regulate UGA4 transcription in response to gamma-aminobutyric acid and leucine. PMID:20581295
Characterization of a new multigene family encoding isomaltases in the yeast Saccharomyces cerevisiae, the IMA family. PMID:20562106
Quantitative transcription dynamic analysis reveals candidate genes and key regulators for ethanol tolerance in Saccharomyces cerevisiae. PMID:20537179
Using GeneReg to construct time delay gene regulatory networks. PMID:20500822
Nutrient control of eukaryote cell growth: a systems biology study in yeast. PMID:20497545
Protein evolution in yeast transcription factor subnetworks. PMID:20466810
Integrated cellular network of transcription regulations and protein-protein interactions. PMID:20211003
Gene expression prediction by soft integration and the elastic net-best performance of the DREAM3 gene expression challenge. PMID:20169069
Transcriptional regulation of respiration in yeast metabolizing differently repressive carbon substrates. PMID:20167065
Inferring Transcriptional Interactions by the Optimal Integration of ChIP-chip and Knock-out Data. PMID:20140075
Global screening of potential Candida albicans biofilm-related transcription factors via network comparison. PMID:20102611
Identifying Stress Transcription Factors Using Gene Expression and TF-Gene Association Data. PMID:20066130
A phenotypic profile of the Candida albicans regulatory network. PMID:20041210
Uncovering transcriptional interactions via an adaptive fuzzy logic approach. PMID:19961622
Growth-limiting intracellular metabolites in yeast growing under diverse nutrient limitations. PMID:19889834
Detailing regulatory networks through large scale data integration. PMID:19825796
Transcriptomic profiling of the Saccharomyces cerevisiae response to quinine reveals a glucose limitation response attributable to drug-induced inhibition of glucose uptake. PMID:19805573
Reconstructing a network of stress-response regulators via dynamic system modeling of gene regulation. PMID:19787074
Beyond element-wise interactions: identifying complex interactions in biological processes. PMID:19774090
Towards the prediction of essential genes by integration of network topology, cellular localization and biological process information. PMID:19758426
A reliable measure of similarity based on dependency for short time series: an application to gene expression networks. PMID:19712487
Predicting eukaryotic transcriptional cooperativity by Bayesian network integration of genome-wide data. PMID:19661283
Modelling transcriptional regulation with a mixture of factor analyzers and variational Bayesian expectation maximization. PMID:19572011
Systems-level engineering of nonfermentative metabolism in yeast. PMID:19564482
Computational analysis of the interaction between transcription factors and the predicted secreted proteome of the yeast Kluyveromyces lactis. PMID:19555482
Genome-wide fitness and expression profiling implicate Mga2 in adaptation to hydrogen peroxide. PMID:19503593
A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time series. PMID:19497096
Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks. PMID:19422680
Novel insights into iron metabolism by integrating deletome and transcriptome analysis in an iron deficiency model of the yeast Saccharomyces cerevisiae. PMID:19321002
Construction and application of a protein and genetic interaction network (yeast interactome). PMID:19273534
Transcriptional response to mitochondrial NADH kinase deficiency in Saccharomyces cerevisiae. PMID:19254780
The high osmotic response and cell wall integrity pathways cooperate to regulate transcriptional responses to zymolyase-induced cell wall stress in Saccharomyces cerevisiae. PMID:19234305
Cell cycle regulation by feed-forward loops coupling transcription and phosphorylation. PMID:19156128
Systematic identification of yeast cell cycle transcription factors using multiple data sources. PMID:19061501
Identification, structure, and functional requirement of the Mediator submodule Med7N/31. PMID:19057509
Network integration and graph analysis in mammalian molecular systems biology. PMID:19045817
Analysis of combinatorial cis-regulation in synthetic and genomic promoters. PMID:19029883
Induction of multiple pleiotropic drug resistance genes in yeast engineered to produce an increased level of anti-malarial drug precursor, artemisinic acid. PMID:18983675
Identifying gene regulatory modules of heat shock response in yeast. PMID:18811975
ESCRT-III protein Snf7 mediates high-level expression of the SUC2 gene via the Rim101 pathway. PMID:18806212
Extensive chromatin fragmentation improves enrichment of protein binding sites in chromatin immunoprecipitation experiments. PMID:18765474
Transcriptional regulators of seven yeast species: comparative genome analysis. Review. PMID:18759110
Selective inhibition of yeast regulons by daunorubicin: a transcriptome-wide analysis. PMID:18667070
Structure and properties of transcriptional networks driving selenite stress response in yeasts. PMID:18627600
Yeast translational response to high salinity: global analysis reveals regulation at multiple levels. PMID:18495938
Global control of cell-cycle transcription by coupled CDK and network oscillators. PMID:18463633
An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance. PMID:18257925
Role of heme in the antifungal activity of the azaoxoaporphine alkaloid sampangine. PMID:18156292
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae. PMID:18032429
Identification of eukaryotic promoter regulatory elements using nonhomologous random recombination. PMID:17720707
A data integration approach for cell cycle analysis oriented to model simulation in systems biology. PMID:17678529
The information coded in the yeast response elements accounts for most of the topological properties of its transcriptional regulation network. PMID:17551581
MYBS: a comprehensive web server for mining transcription factor binding sites in yeast. PMID:17537814
Frequent gain and loss of functional transcription factor binding sites. PMID:17530920
Saccharomyces cerevisiae multidrug resistance transporter Qdr2 is implicated in potassium uptake, providing a physiological advantage to quinidine-stressed cells. PMID:17189489
The Molecular Biology Database Collection: 2006 update. PMID:16381871 -
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
PubMed citations: 118.
118 articles citing: The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
Transcription elongation is finely tuned by dozens of regulatory factors. PMID:35575476
SWI/SNF senses carbon starvation with a pH-sensitive low-complexity sequence. PMID:35129437
A Hierarchical Transcriptional Regulatory Network Required for Long-Term Thermal Stress Tolerance in an Industrial Saccharomyces cerevisiae Strain. PMID:35118059
The LASER database: Formalizing design rules for metabolic engineering. PMID:34150506
Regulation of sphingolipid synthesis by the G1/S transcription factor Swi4. PMID:34062255
Functional and transcriptional profiling of non-coding RNAs in yeast reveal context-dependent phenotypes and in trans effects on the protein regulatory network. PMID:33493158
Recruitment of Xrn1 to stress-induced genes allows efficient transcription by controlling RNA polymerase II backtracking. PMID:33258404
Assessing regulatory features of the current transcriptional network of Saccharomyces cerevisiae. PMID:33082399
A Bayesian data fusion based approach for learning genome-wide transcriptional regulatory networks. PMID:32471360
Cellular Analysis and Comparative Transcriptomics Reveal the Tolerance Mechanisms of Candida tropicalis Toward Phenol. PMID:32373081
Proteomic analysis of the S. cerevisiae response to the anticancer ruthenium complex KP1019. PMID:32329475
QTL mapping of modelled metabolic fluxes reveals gene variants impacting yeast central carbon metabolism. PMID:32034164
Measuring glycolytic flux in single yeast cells with an orthogonal synthetic biosensor. PMID:31885198
Binding and Regulation of Transcription by Yeast Ste12 Variants To Drive Mating and Invasion Phenotypes. PMID:31810988
YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts. PMID:31586406
Conserved crosstalk between histone deacetylation and H3K79 methylation generates DOT1L-dose dependency in HDAC1-deficient thymic lymphoma. PMID:31304633
Rewired cellular signaling coordinates sugar and hypoxic responses for anaerobic xylose fermentation in yeast. PMID:30856163
A transcriptome-wide analysis deciphers distinct roles of G1 cyclins in temporal organization of the yeast cell cycle. PMID:30833602
YESdb: integrative analysis of environmental stress in yeast. PMID:30821814
Inferring Gene Regulatory Networks from a Population of Yeast Segregants. PMID:30718595
Determination of the Global Pattern of Gene Expression in Yeast Cells by Intracellular Levels of Guanine Nucleotides. PMID:30670615
The cell-cycle transcriptional network generates and transmits a pulse of transcription once each cell cycle. PMID:30668223
Decoupling the Variances of Heterosis and Inbreeding Effects Is Evidenced in Yeast's Life-History and Proteomic Traits. PMID:30509954
The Crabtree Effect Shapes the Saccharomyces cerevisiae Lag Phase during the Switch between Different Carbon Sources. PMID:30377274
Amn1 governs post-mitotic cell separation in Saccharomyces cerevisiae. PMID:30273335
Doxorubicin induces an extensive transcriptional and metabolic rewiring in yeast cells. PMID:30209405
Knockout of the Hmt1p Arginine Methyltransferase in Saccharomyces cerevisiae Leads to the Dysregulation of Phosphate-associated Genes and Processes. PMID:30206180
RECTA: Regulon Identification Based on Comparative Genomics and Transcriptomics Analysis. PMID:29849014
Archetypal transcriptional blocks underpin yeast gene regulation in response to changes in growth conditions. PMID:29785040
TelNet - a database for human and yeast genes involved in telomere maintenance. PMID:29776332
Automated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cells. PMID:29745848
Condition-Specific Modeling of Biophysical Parameters Advances Inference of Regulatory Networks. PMID:29641998
Proteasome Activity Is Influenced by the HECT_2 Protein Ipa1 in Budding Yeast. PMID:29519818
QTL mapping of volatile compound production in Saccharomyces cerevisiae during alcoholic fermentation. PMID:29490607
Quantifying complexity in metabolic engineering using the LASER database. PMID:29468127
Functional Analysis of the FZF1 Genes of Saccharomyces uvarum. PMID:29467731
Collection and Curation of Transcriptional Regulatory Interactions in Aspergillus nidulans and Neurospora crassa Reveal Structural and Evolutionary Features of the Regulatory Networks. PMID:29403467
Computational exploration of cis-regulatory modules in rhythmic expression data using the "Exploration of Distinctive CREs and CRMs" (EDCC) and "CRM Network Generator" (CNG) programs. PMID:29298348
YGMD: a repository for yeast cooperative transcription factor sets and their target gene modules. PMID:29220473
RegulatorDB: a resource for the analysis of yeast transcriptional regulation. PMID:29220449
Resetting the Yeast Epigenome with Human Nucleosomes. PMID:29198523
Stress-response transcription factors Msn2 and Msn4 couple TORC2-Ypk1 signaling and mitochondrial respiration to ATG8 gene expression and autophagy. PMID:29198169
ANAT 2.0: reconstructing functional protein subnetworks. PMID:29145805
Profiling of Saccharomyces cerevisiae transcription factors for engineering the resistance of yeast to lignocellulose-derived inhibitors in biomass conversion. PMID:29137634
Hsp90-downregulation influences the heat-shock response, innate immune response and onset of oocyte development in nematodes. PMID:29078207
YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae. PMID:29036684
Engineering species-like barriers to sexual reproduction. PMID:29026112
Yeast Creates a Niche for Symbiotic Lactic Acid Bacteria through Nitrogen Overflow. PMID:28964698
P-body proteins regulate transcriptional rewiring to promote DNA replication stress resistance. PMID:28916784
The Ground State and Evolution of Promoter Region Directionality. PMID:28803729
Aspergillus Secondary Metabolite Database, a resource to understand the Secondary metabolome of Aspergillus genus. PMID:28779078
Bacterial Signaling Nucleotides Inhibit Yeast Cell Growth by Impacting Mitochondrial and Other Specifically Eukaryotic Functions. PMID:28743817
Tuning the Sensitivity of the PDR5 Promoter-Based Detection of Diclofenac in Yeast Biosensors. PMID:28672842
Correspondence: Reply to 'DNA shape is insufficient to explain binding'. PMID:28580953
Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast. PMID:28520713
Three distinct mechanisms of long-distance modulation of gene expression in yeast. PMID:28426659
Yeast response and tolerance to benzoic acid involves the Gcn4- and Stp1-regulated multidrug/multixenobiotic resistance transporter Tpo1. PMID:28409382
Form and function of topologically associating genomic domains in budding yeast. PMID:28348222
Meta-analytic framework for liquid association. PMID:28334340
CAN1 Arginine Permease Deficiency Extends Yeast Replicative Lifespan via Translational Activation of Stress Response Genes. PMID:28228255
BicPAMS: software for biological data analysis with pattern-based biclustering. PMID:28153040
Transcriptome and network analyses in Saccharomyces cerevisiae reveal that amphotericin B and lactoferrin synergy disrupt metal homeostasis and stress response. PMID:28079179
A Chemogenomic Screen Reveals Novel Snf1p/AMPK Independent Regulators of Acetyl-CoA Carboxylase. PMID:28076367
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes. PMID:28053160
Few regulatory metabolites coordinate expression of central metabolic genes in Escherichia coli. PMID:28049137
The CgHaa1-Regulon Mediates Response and Tolerance to Acetic Acid Stress in the Human Pathogen Candida glabrata. PMID:27815348
The Local Edge Machine: inference of dynamic models of gene regulation. PMID:27760556
Evaluating Transcription Factor Activity Changes by Scoring Unexplained Target Genes in Expression Data. PMID:27723775
Past Roadblocks and New Opportunities in Transcription Factor Network Mapping. PMID:27720190
Functional Metabolomics Describes the Yeast Biosynthetic Regulome. PMID:27693354
The PathoYeastract database: an information system for the analysis of gene and genomic transcription regulation in pathogenic yeasts. PMID:27625390
Detecting Cooperativity between Transcription Factors Based on Functional Coherence and Similarity of Their Target Gene Sets. PMID:27623007
A Genome-Scale Investigation of How Sequence, Function, and Tree-Based Gene Properties Influence Phylogenetic Inference. PMID:27492233
CLIMP: Clustering Motifs via Maximal Cliques with Parallel Computing Design. PMID:27487245
Investigating the Combinatory Effects of Biological Networks on Gene Co-expression. PMID:27445830
YCRD: Yeast Combinatorial Regulation Database. PMID:27392072
Meiotic Interactors of a Mitotic Gene TAO3 Revealed by Functional Analysis of its Rare Variant. PMID:27317780
A Network of Paralogous Stress Response Transcription Factors in the Human Pathogen Candida glabrata. PMID:27242683
CoopTFD: a repository for predicted yeast cooperative transcription factor pairs. PMID:27242036
BicNET: Flexible module discovery in large-scale biological networks using biclustering. PMID:27213009
Inferring gene targets of drugs and chemical compounds from gene expression profiles. PMID:27153589
Genome-Wide Mapping of Binding Sites Reveals Multiple Biological Functions of the Transcription Factor Cst6p in Saccharomyces cerevisiae. PMID:27143390
The Hsp70 homolog Ssb and the 14-3-3 protein Bmh1 jointly regulate transcription of glucose repressed genes in Saccharomyces cerevisiae. PMID:27001512
Comprehensive Analysis of the SUL1 Promoter of Saccharomyces cerevisiae. PMID:26936925
Microarray Analysis of Gene Expression in Saccharomyces cerevisiae kap108Δ Mutants upon Addition of Oxidative Stress. PMID:26888869
Bioconductor's EnrichmentBrowser: seamless navigation through combined results of set- & network-based enrichment analysis. PMID:26791995
High-Copy Overexpression Screening Reveals PDR5 as the Main Doxorubicin Resistance Gene in Yeast. PMID:26690737
Inference of gene interaction networks using conserved subsequential patterns from multiple time course gene expression datasets. PMID:26681650
High-order dynamic Bayesian Network learning with hidden common causes for causal gene regulatory network. PMID:26608050
Quantitative nature of overexpression experiments. PMID:26543202
Engineering an efficient and tight D-amino acid-inducible gene expression system in Rhodosporidium/Rhodotorula species. PMID:26502730
Genome-Wide Chromatin Immunoprecipitation in Candida albicans and Other Yeasts. PMID:26483022
An overview of bioinformatics methods for modeling biological pathways in yeast. PMID:26476430
Combinatorial gene regulation by modulation of relative pulse timing. PMID:26466562
Proteome-wide quantitative multiplexed profiling of protein expression: carbon-source dependency in Saccharomyces cerevisiae. PMID:26399295
Time Delayed Causal Gene Regulatory Network Inference with Hidden Common Causes. PMID:26394325
Genomic expression program of Saccharomyces cerevisiae along a mixed-culture wine fermentation with Hanseniaspora guilliermondii. PMID:26314747
Functional Analysis and Characterization of Differential Coexpression Networks. PMID:26282208
The development and characterization of synthetic minimal yeast promoters. PMID:26183606
Convergence behaviour and Control in Non-Linear Biological Networks. PMID:26068060
Temporal expression profiling identifies pathways mediating effect of causal variant on phenotype. PMID:26039065
A Systems Approach to Elucidate Heterosis of Protein Abundances in Yeast. PMID:25971257
SELPHI: correlation-based identification of kinase-associated networks from global phospho-proteomics data sets. PMID:25948583
ChiNet uncovers rewired transcription subnetworks in tolerant yeast for advanced biofuels conversion. PMID:25897127
Control of Plasma Membrane Permeability by ABC Transporters. PMID:25724885
BicPAM: Pattern-based biclustering for biomedical data analysis. PMID:25649207
Nitric oxide-mediated antioxidative mechanism in yeast through the activation of the transcription factor Mac1. PMID:25423296
The Fusarium graminearum genome reveals more secondary metabolite gene clusters and hints of horizontal gene transfer. PMID:25333987
The Hsp90-dependent proteome is conserved and enriched for hub proteins with high levels of protein-protein connectivity. PMID:25316598
Mapping eQTL networks with mixed graphical Markov models. PMID:25271303
Novel distal eQTL analysis demonstrates effect of population genetic architecture on detecting and interpreting associations. PMID:25230953
A system based network approach to ethanol tolerance in Saccharomyces cerevisiae. PMID:25103914
State transitions in the TORC1 signaling pathway and information processing in Saccharomyces cerevisiae. PMID:25085507
Functional association networks as priors for gene regulatory network inference. PMID:24931976
MFS transporters required for multidrug/multixenobiotic (MD/MX) resistance in the model yeast: understanding their physiological function through post-genomic approaches. PMID:24847282
YTRP: a repository for yeast transcriptional regulatory pathways. PMID:24608172
The 2014 Nucleic Acids Research Database Issue and an updated NAR online Molecular Biology Database Collection. PMID:24316579
Saccharomyces genome database provides new regulation data. PMID:24265222 -
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface
PubMed citations: 104.
104 articles citing: YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface
Functional and transcriptional profiling of non-coding RNAs in yeast reveal context-dependent phenotypes and in trans effects on the protein regulatory network. PMID:33493158
Internetwork connectivity of molecular networks across species of life. PMID:33441907
Assessing regulatory features of the current transcriptional network of Saccharomyces cerevisiae. PMID:33082399
Pathway-based signature transcriptional profiles as tolerance phenotypes for the adapted industrial yeast Saccharomyces cerevisiae resistant to furfural and HMF. PMID:32103314
Next-Generation Genome-Scale Models Incorporating Multilevel 'Omics Data: From Yeast to Human. PMID:31602621
YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts. PMID:31586406
Genome-wide functional association networks: background, data & state-of-the-art resources. PMID:31281921
Decoupling the Variances of Heterosis and Inbreeding Effects Is Evidenced in Yeast's Life-History and Proteomic Traits. PMID:30509954
Gene Expression Is Not Random: Scaling, Long-Range Cross-Dependence, and Fractal Characteristics of Gene Regulatory Networks. PMID:30459629
Detection of network motifs using three-way ANOVA. PMID:30080876
Automated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cells. PMID:29745848
Linkage mapping of yeast cross protection connects gene expression variation to a higher-order organismal trait. PMID:29649251
Condition-Specific Modeling of Biophysical Parameters Advances Inference of Regulatory Networks. PMID:29641998
BTNET : boosted tree based gene regulatory network inference algorithm using time-course measurement data. PMID:29560827
Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress. PMID:29240790
YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae. PMID:29036684
NetProphet 2.0: mapping transcription factor networks by exploiting scalable data resources. PMID:28968736
Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast. PMID:28520713
Three distinct mechanisms of long-distance modulation of gene expression in yeast. PMID:28426659
The PathoYeastract database: an information system for the analysis of gene and genomic transcription regulation in pathogenic yeasts. PMID:27625390
Investigating the Combinatory Effects of Biological Networks on Gene Co-expression. PMID:27445830
Transcriptomic response of yeast cells to ATX1 deletion under different copper levels. PMID:27401861
Comprehensive Analysis of the SUL1 Promoter of Saccharomyces cerevisiae. PMID:26936925
Microarray Analysis of Gene Expression in Saccharomyces cerevisiae kap108Δ Mutants upon Addition of Oxidative Stress. PMID:26888869
Properly defining the targets of a transcription factor significantly improves the computational identification of cooperative transcription factor pairs in yeast. PMID:26679776
YAGM: a web tool for mining associated genes in yeast based on diverse biological associations. PMID:26678566
PCTFPeval: a web tool for benchmarking newly developed algorithms for predicting cooperative transcription factor pairs in yeast. PMID:26677932
Semi-supervised prediction of gene regulatory networks using machine learning algorithms. PMID:26564975
Depletion of yeast PDK1 orthologs triggers a stress-like transcriptional response. PMID:26391581
A Systems Approach to Elucidate Heterosis of Protein Abundances in Yeast. PMID:25971257
Deconstructing the genetic basis of spent sulphite liquor tolerance using deep sequencing of genome-shuffled yeast. PMID:25866561
MAPK feedback encodes a switch and timer for tunable stress adaptation in yeast. PMID:25587192
Identifying cooperative transcription factors in yeast using multiple data sources. PMID:25559499
Evolutionary meandering of intermolecular interactions along the drift barrier. PMID:25535374
A comprehensive performance evaluation on the prediction results of existing cooperative transcription factors identification algorithms. PMID:25521604
Protein-protein Interaction Networks of E. coli and S. cerevisiae are similar. PMID:25431098
Nitric oxide-mediated antioxidative mechanism in yeast through the activation of the transcription factor Mac1. PMID:25423296
Pathway connectivity and signaling coordination in the yeast stress-activated signaling network. PMID:25411400
Pulsatile dynamics in the yeast proteome. PMID:25220054
The regulation of coenzyme q biosynthesis in eukaryotic cells: all that yeast can tell us. PMID:25126044
State transitions in the TORC1 signaling pathway and information processing in Saccharomyces cerevisiae. PMID:25085507
yStreX: yeast stress expression database. PMID:25024351
Genetic architecture of ethanol-responsive transcriptome variation in Saccharomyces cerevisiae strains. PMID:24970865
Network-dosage compensation topologies as recurrent network motifs in natural gene networks. PMID:24929807
Cell cycle-regulated transcription: effectively using a genomics toolbox. PMID:24906306
Transcriptomics of cryophilic Saccharomyces kudriavzevii reveals the key role of gene translation efficiency in cold stress adaptations. PMID:24898014
Design of synthetic yeast promoters via tuning of nucleosome architecture. PMID:24862902
An unsupervised approach to predict functional relations between genes based on expression data. PMID:24800208
Controllability in protein interaction networks. PMID:24778220
Physiological effects of over-expressing compartment-specific components of the protein folding machinery in xylose-fermenting Saccharomyces cerevisiae. PMID:24758421
Examining the process of de novo gene birth: an educational primer on "integration of new genes into cellular networks, and their structural maturation". PMID:24653207
Improvement of oxidative stress tolerance in Saccharomyces cerevisiae through global transcription machinery engineering. PMID:24633583
YTRP: a repository for yeast transcriptional regulatory pathways. PMID:24608172
Navigating the multilayered organization of eukaryotic signaling: a new trend in data integration. PMID:24550716
Integration of transcription and flux data reveals molecular paths associated with differences in oxygen-dependent phenotypes of Saccharomyces cerevisiae. PMID:24528924
Experimental assessment of static and dynamic algorithms for gene regulation inference from time series expression data. PMID:24400020
Identifying functional transcription factor binding sites in yeast by considering their positional preference in the promoters. PMID:24386279
Metabolic constraint-based refinement of transcriptional regulatory networks. PMID:24348226
Network component analysis provides quantitative insights on an Arabidopsis transcription factor-gene regulatory network. PMID:24228871
FunCoup 3.0: database of genome-wide functional coupling networks. PMID:24185702
Molecular mechanisms of system responses to novel stimuli are predictable from public data. PMID:24185701
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae. PMID:24170807
LoQAtE--Localization and Quantitation ATlas of the yeast proteomE. A new tool for multiparametric dissection of single-protein behavior in response to biological perturbations in yeast. PMID:24150937
Saccharomyces cerevisiae genes involved in survival of heat shock. PMID:24142923
Differential adaptation to multi-stressed conditions of wine fermentation revealed by variations in yeast regulatory networks. PMID:24094006
yApoptosis: yeast apoptosis database. PMID:24082050
Integration of new genes into cellular networks, and their structural maturation. PMID:24056411
Inferring the effective TOR-dependent network: a computational study in yeast. PMID:24005029
The phosphatase Ptc7 induces coenzyme Q biosynthesis by activating the hydroxylase Coq7 in yeast. PMID:23940037
Genome-wide single-cell-level screen for protein abundance and localization changes in response to DNA damage in S. cerevisiae. PMID:23935119
Identification of yeast cell cycle regulated genes based on genomic features. PMID:23895232
Investigation of malic acid production in Aspergillus oryzae under nitrogen starvation conditions. PMID:23892740
The yeast Snt2 protein coordinates the transcriptional response to hydrogen peroxide-mediated oxidative stress. PMID:23878396
A comprehensive gene regulatory network for the diauxic shift in Saccharomyces cerevisiae. PMID:23873954
PhosphoChain: a novel algorithm to predict kinase and phosphatase networks from high-throughput expression data. PMID:23832245
Investigating host dependence of xylose utilization in recombinant Saccharomyces cerevisiae strains using RNA-seq analysis. PMID:23830104
Boosting probabilistic graphical model inference by incorporating prior knowledge from multiple sources. PMID:23826291
Epigenetic silencing mediates mitochondria stress-induced longevity. PMID:23747251
Ptc6 is required for proper rapamycin-induced down-regulation of the genes coding for ribosomal and rRNA processing proteins in S. cerevisiae. PMID:23704987
Synergistic effects of TOR and proteasome pathways on the yeast transcriptome and cell growth. PMID:23697803
Top-down network analysis to drive bottom-up modeling of physiological processes. PMID:23641868
Mapping functional transcription factor networks from gene expression data. PMID:23636944
Functional knowledge transfer for high-accuracy prediction of under-studied biological processes. PMID:23516347
Comparative analysis of DNA word abundances in four yeast genomes using a novel statistical background model. PMID:23472131
Peroxisomal catalase deficiency modulates yeast lifespan depending on growth conditions. PMID:23425686
Evolution of cis-regulatory elements in yeast de novo and duplicated new genes. PMID:23256513
A gene ontology inferred from molecular networks. PMID:23242164
14-3-3 (Bmh) proteins regulate combinatorial transcription following RNA polymerase II recruitment by binding at Adr1-dependent promoters in Saccharomyces cerevisiae. PMID:23207903
NetwoRx: connecting drugs to networks and phenotypes in Saccharomyces cerevisiae. PMID:23203867
Regulatory network operations in the Pathway Tools software. PMID:22998532
Dissecting the gene network of dietary restriction to identify evolutionarily conserved pathways and new functional genes. PMID:22912585
Identifying biologically interpretable transcription factor knockout targets by jointly analyzing the transcription factor knockout microarray and the ChIP-chip data. PMID:22898448
A model-based method for gene dependency measurement. PMID:22829898
Quantitative- and phospho-proteomic analysis of the yeast response to the tyrosine kinase inhibitor imatinib to pharmacoproteomics-guided drug line extension. PMID:22775238
Integrated analysis of transcriptome and lipid profiling reveals the co-influences of inositol-choline and Snf1 in controlling lipid biosynthesis in yeast. PMID:22622761
GeneCodis3: a non-redundant and modular enrichment analysis tool for functional genomics. PMID:22573175
Yeast toxicogenomics: genome-wide responses to chemical stresses with impact in environmental health, pharmacology, and biotechnology. PMID:22529852
Considerations for creating and annotating the budding yeast Genome Map at SGD: a progress report. PMID:22434826
MHO1, an evolutionarily conserved gene, is synthetic lethal with PLC1; Mho1p has a role in invasive growth. PMID:22412880
A study on promoter characteristics of head-to-head genes in Saccharomyces cerevisiae. PMID:22369481
Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence. PMID:22143240
Development of spatial density maps based on geoprocessing web services: application to tuberculosis incidence in Barcelona, Spain. PMID:22126392
Identification of novel targets for breast cancer by exploring gene switches on a genome scale. PMID:22053771
The yeast ABC transporter Pdr18 (ORF YNR070w) controls plasma membrane sterol composition, playing a role in multidrug resistance. PMID:21831043 -
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae
PubMed citations: 71.
71 articles citing: YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae
Acid pH Strategy Adaptation through NRG1 in Ustilago maydis. PMID:33525315
Assessing regulatory features of the current transcriptional network of Saccharomyces cerevisiae. PMID:33082399
YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts. PMID:31586406
Decoupling the Variances of Heterosis and Inbreeding Effects Is Evidenced in Yeast's Life-History and Proteomic Traits. PMID:30509954
Automated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cells. PMID:29745848
Condition-Specific Modeling of Biophysical Parameters Advances Inference of Regulatory Networks. PMID:29641998
YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae. PMID:29036684
Three distinct mechanisms of long-distance modulation of gene expression in yeast. PMID:28426659
The PathoYeastract database: an information system for the analysis of gene and genomic transcription regulation in pathogenic yeasts. PMID:27625390
Investigating the Combinatory Effects of Biological Networks on Gene Co-expression. PMID:27445830
The WOPR Protein Ros1 Is a Master Regulator of Sporogenesis and Late Effector Gene Expression in the Maize Pathogen Ustilago maydis. PMID:27332891
Comprehensive Analysis of the SUL1 Promoter of Saccharomyces cerevisiae. PMID:26936925
Microarray Analysis of Gene Expression in Saccharomyces cerevisiae kap108Δ Mutants upon Addition of Oxidative Stress. PMID:26888869
A Systems Approach to Elucidate Heterosis of Protein Abundances in Yeast. PMID:25971257
Deconstructing the genetic basis of spent sulphite liquor tolerance using deep sequencing of genome-shuffled yeast. PMID:25866561
Cwc21p promotes the second step conformation of the spliceosome and modulates 3' splice site selection. PMID:25740649
Nitric oxide-mediated antioxidative mechanism in yeast through the activation of the transcription factor Mac1. PMID:25423296
Pulsatile dynamics in the yeast proteome. PMID:25220054
De-novo learning of genome-scale regulatory networks in S. cerevisiae. PMID:25215507
The regulation of coenzyme q biosynthesis in eukaryotic cells: all that yeast can tell us. PMID:25126044
State transitions in the TORC1 signaling pathway and information processing in Saccharomyces cerevisiae. PMID:25085507
Genetic architecture of ethanol-responsive transcriptome variation in Saccharomyces cerevisiae strains. PMID:24970865
Network-dosage compensation topologies as recurrent network motifs in natural gene networks. PMID:24929807
Cell cycle-regulated transcription: effectively using a genomics toolbox. PMID:24906306
Integration of transcription and flux data reveals molecular paths associated with differences in oxygen-dependent phenotypes of Saccharomyces cerevisiae. PMID:24528924
Position weight matrix, gibbs sampler, and the associated significance tests in motif characterization and prediction. PMID:24278755
Molecular mechanisms of system responses to novel stimuli are predictable from public data. PMID:24185701
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae. PMID:24170807
LoQAtE--Localization and Quantitation ATlas of the yeast proteomE. A new tool for multiparametric dissection of single-protein behavior in response to biological perturbations in yeast. PMID:24150937
Transcriptome response to alkane biofuels in Saccharomyces cerevisiae: identification of efflux pumps involved in alkane tolerance. PMID:23826995
Statistical analysis reveals co-expression patterns of many pairs of genes in yeast are jointly regulated by interacting loci. PMID:23555313
RACK1/Asc1p, a ribosomal node in cellular signaling. PMID:23071099
Quercetin protects Saccharomyces cerevisiae against oxidative stress by inducing trehalose biosynthesis and the cell wall integrity pathway. PMID:23029052
A model-based method for gene dependency measurement. PMID:22829898
An integrative approach to infer regulation programs in a transcription regulatory module network. PMID:22577292
Identification of an Hsp90 mutation that selectively disrupts cAMP/PKA signaling in Saccharomyces cerevisiae. PMID:22461145
Yap1: a DNA damage responder in Saccharomyces cerevisiae. PMID:22433435
Integrating phosphorylation network with transcriptional network reveals novel functional relationships. PMID:22432002
Yeast IME2 functions early in meiosis upstream of cell cycle-regulated SBF and MBF targets. PMID:22393365
A study on promoter characteristics of head-to-head genes in Saccharomyces cerevisiae. PMID:22369481
Boron stress activates the general amino acid control mechanism and inhibits protein synthesis. PMID:22114689
A conserved transcriptional regulator governs fungal morphology in widely diverged species. PMID:22095082
Transcriptional regulation in Saccharomyces cerevisiae: transcription factor regulation and function, mechanisms of initiation, and roles of activators and coactivators. PMID:22084422
The resistance of the yeast Saccharomyces cerevisiae to the biocide polyhexamethylene biguanide: involvement of cell wall integrity pathway and emerging role for YAP1. PMID:21854579
Integrating multiple types of data to predict novel cell cycle-related genes. PMID:21689484
Learning transcriptional regulation on a genome scale: a theoretical analysis based on gene expression data. PMID:21622543
Multiple sequence-specific factors generate the nucleosome-depleted region on CLN2 promoter. PMID:21596311
Converging evidence of mitochondrial dysfunction in a yeast model of homocysteine metabolism imbalance. PMID:21504896
Large-scale 13C-flux analysis reveals distinct transcriptional control of respiratory and fermentative metabolism in Escherichia coli. PMID:21451587
Whole genome sequencing of Saccharomyces cerevisiae: from genotype to phenotype for improved metabolic engineering applications. PMID:21176163
Cell cycle sensing of oxidative stress in Saccharomyces cerevisiae by oxidation of a specific cysteine residue in the transcription factor Swi6p. PMID:21147769
Suppression of statin effectiveness by copper and zinc in yeast and human cells. PMID:21085730
YPA: an integrated repository of promoter features in Saccharomyces cerevisiae. PMID:21045055
Functional gene expression profiling in yeast implicates translational dysfunction in mutant huntingtin toxicity. PMID:21044956
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface. PMID:20972212
Comparative study of discretization methods of microarray data for inferring transcriptional regulatory networks. PMID:20955620
Statistical inference of the time-varying structure of gene-regulation networks. PMID:20860793
Structural and functional study of YER067W, a new protein involved in yeast metabolism control and drug resistance. PMID:20567505
Reconstruction of the yeast protein-protein interaction network involved in nutrient sensing and global metabolic regulation. PMID:20500839
Using GeneReg to construct time delay gene regulatory networks. PMID:20500822
Evolutionary tinkering with conserved components of a transcriptional regulatory network. PMID:20231876
Gene expression prediction by soft integration and the elastic net-best performance of the DREAM3 gene expression challenge. PMID:20169069
Revealing a signaling role of phytosphingosine-1-phosphate in yeast. PMID:20160710
Inferring Transcriptional Interactions by the Optimal Integration of ChIP-chip and Knock-out Data. PMID:20140075
Maximization of negative correlations in time-course gene expression data for enhancing understanding of molecular pathways. PMID:19854949
Physical and genetic interactions of yeast Cwc21p, an ortholog of human SRm300/SRRM2, suggest a role at the catalytic center of the spliceosome. PMID:19854871
Predicting eukaryotic transcriptional cooperativity by Bayesian network integration of genome-wide data. PMID:19661283
Systems-level engineering of nonfermentative metabolism in yeast. PMID:19564482
Spatio-temporal dynamics of yeast mitochondrial biogenesis: transcriptional and post-transcriptional mRNA oscillatory modules. PMID:19521515
Normal function of the yeast TOR pathway requires the type 2C protein phosphatase Ptc1. PMID:19273591
Analysis of combinatorial cis-regulation in synthetic and genomic promoters. PMID:19029883 - http://dx.doi.org/10.1093/nar/gkt1015
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More detailed information about this field from each metasource.
biological regulation
metasource: Fairsharing.org
version: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
regulation of gene expression
metasource: Fairsharing.org
version: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
small molecule
metasource: Fairsharing.org
version: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
transcript
metasource: Fairsharing.org
version: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
transcription factor
metasource: Fairsharing.org
version: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
nucleotide sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
transcriptional regulator sites and transcription factors
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
fungal genome databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
transcription factors and regulatory sites
metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:01.788002
gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:01.788002
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:01.788002
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:01.788002
gene regulation
metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:01.788002
Tags
More detailed information about this field from each metasource.
biological regulation
metasource: Fairsharing.orgversion: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
regulation of gene expression
metasource: Fairsharing.orgversion: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
small molecule
metasource: Fairsharing.orgversion: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
transcript
metasource: Fairsharing.orgversion: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
transcription factor
metasource: Fairsharing.orgversion: FAIRsharing.org: YEASTRACT; Yeast Searching for Transcriptional Regulators and Consensus Tracking; DOI: https://doi.org/10.25504/FAIRsharing.mphj4z; Last edited: April 26, 2021, 11:29 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
nucleotide sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
transcriptional regulator sites and transcription factors
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
fungal genome databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
transcription factors and regulatory sites
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:25:01.788002
gene expression
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:25:01.788002
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:25:01.788002
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:25:01.788002
gene regulation
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:25:01.788002
biological regulation dna gene regulation of gene expression small molecule transcript transcription nucleic acid sequence transcription genomics fungal genome transcription factors and regulatory sites gene expression model organisms molecular interactions, pathways and networks gene regulation
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