Database of Arabidopsis Transcription Factors
Names
More detailed information about this field from each metasource.
Database of Arabidopsis Transcription Factors
metasource: Fairsharing.org
version: FAIRsharing.org: DATF; Database of Arabidopsis Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.a5zy4g; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
DATF
metasource: Fairsharing.org
version: FAIRsharing.org: DATF; Database of Arabidopsis Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.a5zy4g; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:19.923820
datf
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:19.923820
Names
More detailed information about this field from each metasource.
Database of Arabidopsis Transcription Factors
metasource: Fairsharing.orgversion: FAIRsharing.org: DATF; Database of Arabidopsis Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.a5zy4g; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
DATF
metasource: Fairsharing.orgversion: FAIRsharing.org: DATF; Database of Arabidopsis Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.a5zy4g; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:19.923820
datf
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:19.923820
Names
More detailed information about this field from each metasource.
Database of Arabidopsis Transcription Factors
metasource: Fairsharing.orgversion: FAIRsharing.org: DATF; Database of Arabidopsis Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.a5zy4g; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
DATF
metasource: Fairsharing.orgversion: FAIRsharing.org: DATF; Database of Arabidopsis Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.a5zy4g; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:19.923820
datf
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:19.923820
The Database of Arabidopsis Transcription Factors (DATF) collects all Arabidopsis transcription factors (totally 1922 Loci; 2290 Gene Models) and classifies them into 64 families.The Version 2 of DATF was updated at July 2006. It is based on the Arabidopsis Sequence of TAIR, predicted Nuclear Location Signals, UniGene information, as well as links to literature reference.
Description
More detailed information about this field from each metasource.
The Database of Arabidopsis Transcription Factors (DATF) collects all Arabidopsis transcription factors (totally 1922 Loci; 2290 Gene Models) and classifies them into 64 families.The Version 2 of DATF was updated at July 2006. It is based on the Arabidopsis Sequence of TAIR, predicted Nuclear Location Signals, UniGene information, as well as links to literature reference.
metasource: Fairsharing.orgversion: FAIRsharing.org: DATF; Database of Arabidopsis Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.a5zy4g; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
The Database of Arabidopsis Transcription Factors (DATF) collects all Arabidopsis transcription factors (totally 1922 Loci; 2290 Gene Models) and classifies them into 64 families.The Version 2 of DATF was updated at July 2006. It is based on the Arabidopsis Sequence of TAIR <http://www.arabidopsis.org> version 6 (20051108). It uses not only locus (gene), but also gene model (transcript, protein) and the detail information is for each gene model not for locus. It add multiple alignment of the DNA-binding domain of each family, Neighbor-Joining phylogenectic tree of each family, the GO annotation, homolog with the Database of Rice Transcription Factors(DRTF) . It also keeps old information items such as the uniq cloned and sequenced information of about 1200 transcription factors, protein domains, 3Dstructure information with BLAST hits against PDB <http://www.pdb.org>, predicted Nuclear Location Signals, UniGene information, as well as links to literature reference.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
The Database of Arabidopsis Transcription Factors (DATF) contains information of more than 1800 known and predicted transcription factors for Arabidopsis.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:19.923820
Webpage:
http://datf.cbi.pku.edu.cnWebpage
More detailed information about this field from each metasource.
http://datf.cbi.pku.edu.cn
metasource: Fairsharing.orgversion: FAIRsharing.org: DATF; Database of Arabidopsis Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.a5zy4g; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:19.923820
http://datf.cbi.pku.edu.cn/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Licence:
Name: NIH Web Policies and NoticesLicence name
More detailed information about this field from each metasource.
NIH Web Policies and Notices
metasource: Fairsharing.orgversion: FAIRsharing.org: DATF; Database of Arabidopsis Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.a5zy4g; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Licence URL
More detailed information about this field from each metasource.
https://www.nih.gov/web-policies-notices
metasource: Fairsharing.orgversion: FAIRsharing.org: DATF; Database of Arabidopsis Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.a5zy4g; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
DATF: a database of Arabidopsis transcription factors
PMID: 15731212
metasource: Fairsharing.org
version: FAIRsharing.org: DATF; Database of Arabidopsis Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.a5zy4g; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:19.923820
Publications
More detailed information about this field from each metasource.
DATF: a database of Arabidopsis transcription factors
PMID: 15731212
metasource: Fairsharing.org
version: FAIRsharing.org: DATF; Database of Arabidopsis Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.a5zy4g; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:19.923820
-
DATF: a database of Arabidopsis transcription factors
PubMed citations: 152.
152 articles citing: DATF: a database of Arabidopsis transcription factors
A Cys2His2 Zinc Finger Transcription Factor BpSZA1 Positively Modulates Salt Stress in Betula platyphylla. PMID:35693173
A de novo regulation design shows an effectiveness in altering plant secondary metabolism. PMID:35499047
Genome-Wide Identification and Expression Analysis of BBX Transcription Factors in Iris germanica L. PMID:34445524
Genome-wide analysis of microRNA156 and its targets, the genes encoding SQUAMOSA promoter-binding protein-like (SPL) transcription factors, in the grass family Poaceae. PMID:33973419
CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa. PMID:33306801
Global gene expression analyses of the alkamide-producing plant Heliopsis longipes supports a polyketide synthase-mediated biosynthesis pathway. PMID:33033663
Genome-Wide Analysis Reveals Transcription Factors Regulated by Spider-Mite Feeding in Cucumber (Cucumis sativus). PMID:32796676
Transcriptome-wide analysis of MADS-box family genes involved in aluminum and fluoride assimilation in Camellia sinensis. PMID:31892818
The Heterologous Expression of a Chrysanthemum nankingense TCP Transcription Factor Blocks Cell Division in Yeast and Arabidopsis thaliana. PMID:31569563
Biological roles and an evolutionary sketch of the GRF-GIF transcriptional complex in plants. PMID:30885290
Transcriptome Analysis of Diurnal Gene Expression in Chinese Cabbage. PMID:30754711
Pan- and core- gene association networks: Integrative approaches to understanding biological regulation. PMID:30625202
Regulatory chromatin landscape in Arabidopsis thaliana roots uncovered by coupling INTACT and ATAC-seq. PMID:30598689
The Constitutive Expression of a Chrysanthemum ERF Transcription Factor Influences Flowering Time in Arabidopsis thaliana. PMID:30448907
Computational Methods for Predicting Protein-Protein Interactions Using Various Protein Features. PMID:29927082
Transcriptomic analysis reveals the roles of gibberellin-regulated genes and transcription factors in regulating bolting in lettuce (Lactuca sativa L.). PMID:29415067
Overexpression of SbAP37 in rice alleviates concurrent imposition of combination stresses and modulates different sets of leaf protein profiles. PMID:28393269
Parallel analysis of Arabidopsis circadian clock mutants reveals different scales of transcriptome and proteome regulation. PMID:28250106
PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants. PMID:27924042
Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors. PMID:27923776
Transcription factors involved in drought tolerance and their possible role in developing drought tolerant cultivars with emphasis on wheat (Triticum aestivum L.). PMID:27738714
A Transcriptional and Metabolic Framework for Secondary Wall Formation in Arabidopsis. PMID:27566165
AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling. PMID:27107291
An Ethylene-responsive Factor BpERF11 Negatively Modulates Salt and Osmotic Tolerance in Betula platyphylla. PMID:26980058
CURLY LEAF Regulates Gene Sets Coordinating Seed Size and Lipid Biosynthesis. PMID:26945048
MGFD: the maize gene families database. PMID:26896848
Genome-Wide Analysis of the AP2/ERF Superfamily Genes and their Responses to Abiotic Stress in Medicago truncatula. PMID:26834762
Transcriptional regulatory networks in Arabidopsis thaliana during single and combined stresses. PMID:26681689
Interaction of Arabidopsis Trihelix-Domain Transcription Factors VFP3 and VFP5 with Agrobacterium Virulence Protein VirF. PMID:26571494
Gene expression profiling during adventitious root formation in carnation stem cuttings. PMID:26467528
Transcriptome-wide identification of Camellia sinensis WRKY transcription factors in response to temperature stress. PMID:26308611
Transcriptome-based discovery of AP2/ERF transcription factors related to temperature stress in tea plant (Camellia sinensis). PMID:26233577
Selection for Improved Energy Use Efficiency and Drought Tolerance in Canola Results in Distinct Transcriptome and Epigenome Changes. PMID:26082400
The Arabidopsis GAGA-Binding Factor BASIC PENTACYSTEINE6 Recruits the POLYCOMB-REPRESSIVE COMPLEX1 Component LIKE HETEROCHROMATIN PROTEIN1 to GAGA DNA Motifs. PMID:26025051
REGULATOR: a database of metazoan transcription factors and maternal factors for developmental studies. PMID:25880930
Genome-wide analysis of the AP2/ERF family in Eucalyptus grandis: an intriguing over-representation of stress-responsive DREB1/CBF genes. PMID:25849589
Upstream regulatory architecture of rice genes: summarizing the baseline towards genus-wide comparative analysis of regulatory networks and allele mining. PMID:25844119
A gene co-expression network predicts functional genes controlling the re-establishment of desiccation tolerance in germinated Arabidopsis thaliana seeds. PMID:25809152
Expression pattern and subcellular localization of the ovate protein family in rice. PMID:25760462
Analysis of Arabidopsis floral transcriptome: detection of new florally expressed genes and expansion of Brassicaceae-specific gene families. PMID:25653662
Isolation and characterization of six AP2/ERF transcription factor genes in Chrysanthemum nankingense. PMID:25607731
Transcript profiling reveals auxin and cytokinin signaling pathways and transcription regulation during in vitro organogenesis of Ramie (Boehmeria nivea L. Gaud). PMID:25415356
RNA-sequencing reveals early, dynamic transcriptome changes in the corollas of pollinated petunias. PMID:25403317
Genome wide in silico characterization of Dof gene families of pigeonpea (Cajanus cajan (L) Millsp.). PMID:25344821
AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors. PMID:25262351
Maize and millet transcription factors annotated using comparative genomic and transcriptomic data. PMID:25261191
Characterization of putative cis-regulatory elements in genes preferentially expressed in Arabidopsis male meiocytes. PMID:25250331
Phylogenetic and transcription analysis of chrysanthemum WRKY transcription factors. PMID:25196345
Roles for jasmonate- and ethylene-induced transcription factors in the ability of Arabidopsis to respond differentially to damage caused by two insect herbivores. PMID:25191332
A genome-scale resource for the functional characterization of Arabidopsis transcription factors. PMID:25043187
Expression-based network biology identifies immune-related functional modules involved in plant defense. PMID:24888606
Parenclitic networks: uncovering new functions in biological data. PMID:24870931
Molecular cloning and characterization of NPR1 gene from Arachis hypogaea. PMID:24842264
Genome-wide analysis of AP2/ERF family genes from Lotus corniculatus shows LcERF054 enhances salt tolerance. PMID:24777608
ARACNe-based inference, using curated microarray data, of Arabidopsis thaliana root transcriptional regulatory networks. PMID:24739361
NEMiD: a web-based curated microbial diversity database with geo-based plotting. PMID:24714636
Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance. PMID:24482368
Genome scale transcriptional response diversity among ten ecotypes of Arabidopsis thaliana during heat stress. PMID:24409190
Genome-wide identification, phylogeny, evolution and expression patterns of AP2/ERF genes and cytokinin response factors in Brassica rapa ssp. pekinensis. PMID:24386201
TFpredict and SABINE: sequence-based prediction of structural and functional characteristics of transcription factors. PMID:24349230
NEMATIC: a simple and versatile tool for the in silico analysis of plant-nematode interactions. PMID:24330140
PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors. PMID:24174544
Genome-scale cold stress response regulatory networks in ten Arabidopsis thaliana ecotypes. PMID:24148294
Discovery of diversity in xylan biosynthetic genes by transcriptional profiling of a heteroxylan containing mucilaginous tissue. PMID:23761806
Comparative analyses of nuclear proteome: extending its function. PMID:23637696
Molecular signatures in Arabidopsis thaliana in response to insect attack and bacterial infection. PMID:23536844
Transcriptome responses to combinations of stresses in Arabidopsis. PMID:23447525
Global approaches for telling time: omics and the Arabidopsis circadian clock. PMID:23435351
Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids. PMID:23410187
Genome-wide identification and analysis of the B3 superfamily of transcription factors in Brassicaceae and major crop plants. PMID:23377560
STIFDB2: an updated version of plant stress-responsive transcription factor database with additional stress signals, stress-responsive transcription factor binding sites and stress-responsive genes in Arabidopsis and rice. PMID:23314754
From models to ornamentals: how is flower senescence regulated? PMID:22983713
Genome-scale identification of cell-wall related genes in Arabidopsis based on co-expression network analysis. PMID:22877077
Transcript profiling reveals complex auxin signalling pathway and transcription regulation involved in dedifferentiation and redifferentiation during somatic embryogenesis in cotton. PMID:22817809
A transcriptional dynamic network during Arabidopsis thaliana pollen development. PMID:22784627
Genome-wide identification of regulatory DNA elements and protein-binding footprints using signatures of open chromatin in Arabidopsis. PMID:22773751
Isolation and characterization of cold responsive NAC gene from Lepidium latifolium. PMID:22733493
Molecular screening tools to study Arabidopsis transcription factors. PMID:22645547
Template-based structure prediction and classification of transcription factors in Arabidopsis thaliana. PMID:22549903
Wide-scale screening of T-DNA lines for transcription factor genes affecting male gametophyte development in Arabidopsis. PMID:22101548
AnimalTFDB: a comprehensive animal transcription factor database. PMID:22080564
Analysis of Arabidopsis transcription factor families revealed extensive capacity for cell-to-cell movement as well as discrete trafficking patterns. PMID:22080370
The TOPLESS interactome: a framework for gene repression in Arabidopsis. PMID:22065421
Speeding cis-trans regulation discovery by phylogenomic analyses coupled with screenings of an arrayed library of Arabidopsis transcription factors. PMID:21738689
Transcriptomics and molecular evolutionary rate analysis of the bladderwort (Utricularia), a carnivorous plant with a minimal genome. PMID:21639913
Analysis of osmotin, a PR protein as metabolic modulator in plants. PMID:21383921
Genomic and transcriptomic analysis of the AP2/ERF superfamily in Vitis vinifera. PMID:21171999
Progress studies of drought-responsive genes in rice. PMID:21132431
Isolation and characterization of an AP2/ERF-RAV transcription factor BnaRAV-1-HY15 in Brassica napus L. HuYou15. PMID:21116861
PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database. PMID:21097470
Functional characterization of four APETALA2-family genes (RAP2.6, RAP2.6L, DREB19 and DREB26) in Arabidopsis. PMID:21069430
Biomedical text summarization to support genetic database curation: using Semantic MEDLINE to create a secondary database of genetic information. PMID:20936065
Identification, phylogeny, and transcript profiling of ERF family genes during development and abiotic stress treatments in tomato. PMID:20922546
Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity. PMID:20644220
Identification of transcription-factor genes expressed in the Arabidopsis female gametophyte. PMID:20550711
Transcriptional profiles underlying parent-of-origin effects in seeds of Arabidopsis thaliana. PMID:20406451
Identification of recognition sequence of ANAC078 protein by the cyclic amplification and selection of targets technique. PMID:20404498
An expression analysis of 57 transcription factors derived from ESTs of developing seeds in Maize (Zea mays). PMID:20336461
wDBTF: an integrated database resource for studying wheat transcription factor families. PMID:20298594
Genomics and bioinformatics resources for crop improvement. PMID:20208064
Transcriptome analysis of secondary-wall-enriched seed coat tissues of canola (Brassica napus L.). PMID:20145934
Genome-wide identification and evolutionary analysis of the animal specific ETS transcription factor family. PMID:20011068
Comparative transcript analyses of the ovule, microspore, and mature pollen in Brassica napus. PMID:19949835
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PMID:19936069
In silico analysis of transcription factor repertoire and prediction of stress responsive transcription factors in soybean. PMID:19884168
STIFDB-Arabidopsis Stress Responsive Transcription Factor DataBase. PMID:19841686
The development of protein microarrays and their applications in DNA-protein and protein-protein interaction analyses of Arabidopsis transcription factors. PMID:19802365
Top hits in contemporary JAZ: an update on jasmonate signaling. PMID:19800644
Evolutionarily conserved regulatory motifs in the promoter of the Arabidopsis clock gene LATE ELONGATED HYPOCOTYL. PMID:19789276
Comparative analyses of plant transcription factor databases. PMID:19721806
Integrating microarray analysis and the soybean genome to understand the soybeans iron deficiency response. PMID:19678937
Manipulating large-scale Arabidopsis microarray expression data: identifying dominant expression patterns and biological process enrichment. PMID:19588101
Identification of candidate genes affecting Delta9-tetrahydrocannabinol biosynthesis in Cannabis sativa. PMID:19581347
Internet Resources for Gene Expression Analysis in Arabidopsis thaliana. PMID:19506727
Functional analysis of transcription factors in Arabidopsis. PMID:19478073
Gene and metabolite regulatory network analysis of early developing fruit tissues highlights new candidate genes for the control of tomato fruit composition and development. PMID:19144766
A recommendation for naming transcription factor proteins in the grasses. PMID:19126689
PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups. PMID:19036138
ATTED-II provides coexpressed gene networks for Arabidopsis. PMID:18953027
Transcriptome-wide analysis of uncapped mRNAs in Arabidopsis reveals regulation of mRNA degradation. PMID:18952771
Genome-wide transcriptional analysis of super-embryogenic Medicago truncatula explant cultures. PMID:18950541
Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice. PMID:18931143
Transcriptome analysis of proliferating Arabidopsis endosperm reveals biological implications for the control of syncytial division, cytokinin signaling, and gene expression regulation. PMID:18923020
STIF: Identification of stress-upregulated transcription factor binding sites in Arabidopsis thaliana. PMID:18841238
A community resource for high-throughput quantitative RT-PCR analysis of transcription factor gene expression in Medicago truncatula. PMID:18611268
The combination approach of SVM and ECOC for powerful identification and classification of transcription factor. PMID:18554421
Large-scale analysis of the GRAS gene family in Arabidopsis thaliana. PMID:18500650
Bioinformatics in China: a personal perspective. PMID:18437216
Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants. PMID:18426584
DATFAP: a database of primers and homology alignments for transcription factors from 13 plant species. PMID:18366738
Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1. PMID:18344319
Tobacco transcription factors: novel insights into transcriptional regulation in the Solanaceae. PMID:18337489
Sequencing and analysis of the gene-rich space of cowpea. PMID:18304330
Transcriptional profiling of Medicago truncatula meristematic root cells. PMID:18302802
Transcriptomic responses to aluminum stress in roots of Arabidopsis thaliana. PMID:18270741
TOBFAC: the database of tobacco transcription factors. PMID:18221524
GreenPhylDB: a database for plant comparative genomics. PMID:17986457
PlantTFDB: a comprehensive plant transcription factor database. PMID:17933783
A new systematic computational approach to predicting target genes of transcription factors. PMID:17576669
Genomic and genetic control of phosphate stress in legumes. PMID:17556523
Legume transcription factors: global regulators of plant development and response to the environment. PMID:17556517
G-boxes, bigfoot genes, and environmental response: characterization of intragenomic conserved noncoding sequences in Arabidopsis. PMID:17496117
Integrative content-driven concepts for bioinformatics "beyond the cell". PMID:17426389
Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis. PMID:17420480
Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development. PMID:17337630
PlanTAPDB, a phylogeny-based resource of plant transcription-associated proteins. PMID:17337525
PlnTFDB: an integrative plant transcription factor database. PMID:17286856
Comprehensive transcriptional profiling of NaCl-stressed Arabidopsis roots reveals novel classes of responsive genes. PMID:17038189
Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis. PMID:16640459
Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots. PMID:16581911
AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks. PMID:16524982
TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes. PMID:16381825
Tags:
Tags
More detailed information about this field from each metasource.
biological regulation
metasource: Fairsharing.org
version: FAIRsharing.org: DATF; Database of Arabidopsis Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.a5zy4g; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene model annotation
metasource: Fairsharing.org
version: FAIRsharing.org: DATF; Database of Arabidopsis Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.a5zy4g; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
arabidopsis thaliana
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
transcription factors and regulatory sites
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:19.923820
gene transcripts
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:19.923820
gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:19.923820
gene and protein families
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:19.923820
Tags
More detailed information about this field from each metasource.
biological regulation
metasource: Fairsharing.orgversion: FAIRsharing.org: DATF; Database of Arabidopsis Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.a5zy4g; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene model annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: DATF; Database of Arabidopsis Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.a5zy4g; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
arabidopsis thaliana
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
transcription factors and regulatory sites
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:19.923820
gene transcripts
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:19.923820
gene expression
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:19.923820
gene and protein families
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:19.923820
biological regulation gene model annotation plant transcription factors and regulatory sites gene transcripts gene expression gene and protein families
Need help integrating and/or managing biomedical data?