SoyBase
Names
More detailed information about this field from each metasource.
SoyBase
metasource: Fairsharing.org
version: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: SoyBase; editing status 2022-01-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S032 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.505738
SoyBase and the Soybean Breeder's Toolbox
metasource: re3data.org
version: re3data.org: SoyBase; editing status 2022-01-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S032 last accessed: 2022-11-04
soybase
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.505738
Names
More detailed information about this field from each metasource.
SoyBase
metasource: Fairsharing.orgversion: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: SoyBase; editing status 2022-01-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S032 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.505738
SoyBase and the Soybean Breeder's Toolbox
metasource: re3data.orgversion: re3data.org: SoyBase; editing status 2022-01-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S032 last accessed: 2022-11-04
soybase
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:33.505738
Other names: SoyBase and the Soybean Breeder's Toolbox, soybase
Names
More detailed information about this field from each metasource.
SoyBase
metasource: Fairsharing.orgversion: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: SoyBase; editing status 2022-01-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S032 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.505738
SoyBase and the Soybean Breeder's Toolbox
metasource: re3data.orgversion: re3data.org: SoyBase; editing status 2022-01-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S032 last accessed: 2022-11-04
soybase
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:33.505738
SoyBase, the USDA-ARS soybean genetic database, is a comprehensive repository for professionally curated genetics, genomics and related data resources for soybean. SoyBase contains genetic, physical and genomic sequence maps integrated with qualitative and quantitative traits. The quantitative trait loci (QTL) represent more than 18 years of QTL mapping of more than 90 unique traits. SoyBase also contains the well-annotated 'Williams 82' genomic sequence and associated data mining tools. The genetic and sequence views of the soybean chromosomes and the extensive data on traits and phenotypes are extensively interlinked. This allows entry to the database using almost any kind of available information, such as genetic map symbols, soybean gene names or phenotypic traits. SoyBase is the repository for controlled vocabularies for soybean growth, development and trait terms, which are also linked to the more general plant ontologies.
Description
More detailed information about this field from each metasource.
SoyBase, the USDA-ARS soybean genetic database, is a comprehensive repository for professionally curated genetics, genomics and related data resources for soybean. SoyBase contains genetic, physical and genomic sequence maps integrated with qualitative and quantitative traits. The quantitative trait loci (QTL) represent more than 18 years of QTL mapping of more than 90 unique traits. SoyBase also contains the well-annotated 'Williams 82' genomic sequence and associated data mining tools. The genetic and sequence views of the soybean chromosomes and the extensive data on traits and phenotypes are extensively interlinked. This allows entry to the database using almost any kind of available information, such as genetic map symbols, soybean gene names or phenotypic traits. SoyBase is the repository for controlled vocabularies for soybean growth, development and trait terms, which are also linked to the more general plant ontologies.
metasource: Fairsharing.orgversion: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
SoyBase, the USDA-ARS soybean genetics database, is a central repository where researchers can quickly find information on most aspects of soybean genetics, metabolism, and pathology. In 1993 SoyBase offered the first publicly available RFLP maps of the soybean genome as well as the first extensive collection of metabolic data in a plant genome database. SoyBase has since been expanded to contain almost all published data on soybean genetic research. A major milestone occurred in 2000 when a set of composite genetic maps was released. The current composite genetic maps contain more than 3800 mapped classical and molecular loci along with more than 950 QTL. The major Classes of data in SoyBase are: Map Collections: Classical genetic map and 35 molecular marker maps, including the composite genetic/molecular maps. Maps include molecular and whole plant phenotype markers and QTL.Trait: Traits associated with entries in the GRIN and PVP databases, with links to genes, QTL, and pathology. Reaction or Pathway: Clickable diagrams of more than 900 metabolic pathways showing kinetics, enzymes, metabolites and regulation. Data include detailed information for 900+ enzymes. Pathology: Information on soybean diseases including causative organism, symptoms, differentials, distribution, and resistance mechanisms. Nodulation: Plant and microbial processes and genes involved in nodulation of soybean. Transformation: Summary of transformation in soybean, including methodology, transgenes, cultivar, and regeneration of plants. Tools are provided at the SoyBase site for searching, downloading and analyzing the extensive soybean EST collection. Precomputed gene-specific clusters of ESTs are also available for searching by annotation or sequence and for download.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
SoyBase is a professionally curated repository for genetics, genomics and related data resources for soybean. It contains current genetic, physical and genomic sequence maps integrated with qualitative and quantitative traits. SoyBase includes annotated "Williams 82" genomic sequence and associated data mining tools. The repository maintains controlled vocabularies for soybean growth, development, and traits that are linked to more general plant ontologies.
metasource: re3data.orgversion: re3data.org: SoyBase; editing status 2022-01-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S032 last accessed: 2022-11-04
Soybean genetic database, is a comprehensive repository for curated genetics, genomics and related data resources for soybean. Contains the most current genetic, physical and genomic sequence maps integrated with qualitative and quantitative traits. SoyBase also contains the well-annotated ''Williams 82'' genomic sequence and associated data mining tools.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:33.505738
Webpage:
https://soybase.org/Webpage
More detailed information about this field from each metasource.
https://soybase.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: re3data.org
version: re3data.org: SoyBase; editing status 2022-01-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S032 last accessed: 2022-11-04
http://soybase.org/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
http://soybase.org
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:33.505738
Licence:
Name: U.S. Public DomainLicence name
More detailed information about this field from each metasource.
U.S. Public Domain
metasource: Fairsharing.orgversion: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
other
metasource: re3data.orgversion: re3data.org: SoyBase; editing status 2022-01-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S032 last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
https://www.usa.gov/government-works
metasource: Fairsharing.orgversion: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
https://soybase.org/resources/SoyWebPics/index.php
metasource: re3data.orgversion: re3data.org: SoyBase; editing status 2022-01-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S032 last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
SoyBase, the USDA-ARS soybean genetics and genomics database
PMID: 20008513
metasource: Fairsharing.org
version: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.505738
https://doi.org/10.1093/nar/gkaa1107
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
SoyBase, the USDA-ARS soybean genetics and genomics database
PMID: 20008513
metasource: Fairsharing.org
version: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.505738
https://doi.org/10.1093/nar/gkaa1107
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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SoyBase, the USDA-ARS soybean genetics and genomics database
PubMed citations: 207.
207 articles citing: SoyBase, the USDA-ARS soybean genetics and genomics database
Genetic Augmentation of Legume Crops Using Genomic Resources and Genotyping Platforms for Nutritional Food Security. PMID:35890499
Genome-Wide Characterization and Expression Analysis of GeBP Family Genes in Soybean. PMID:35890483
Genome-Wide Classification and Evolutionary Analysis Reveal Diverged Patterns of Chalcone Isomerase in Plants. PMID:35883518
The Hidden Potential of High-Throughput RNA-Seq Re-Analysis, a Case Study for DHDPS, Key Enzyme of the Aspartate-Derived Lysine Biosynthesis Pathway and Its Role in Abiotic and Biotic Stress Responses in Soybean. PMID:35807714
Constitutive expression of a pea apyrase, psNTP9, increases seed yield in field-grown soybean. PMID:35760854
Genetic relationships and genome selection signatures between soybean cultivars from Brazil and United States after decades of breeding. PMID:35739190
Mapping and identification of QTL in 5601T × U99-310255 RIL population using SNP genotyping: soybean seed quality traits. PMID:35618938
Exploring Machine Learning Algorithms to Unveil Genomic Regions Associated With Resistance to Southern Root-Knot Nematode in Soybeans. PMID:35592556
Enhanced reactive oxygen detoxification occurs in salt-stressed soybean roots expressing GmSALT3. PMID:35580210
Genetic and Genomic Resources for Soybean Breeding Research. PMID:35567182
A Multi-Level Iterative Bi-Clustering Method for Discovering miRNA Co-regulation Network of Abiotic Stress Tolerance in Soybeans. PMID:35463453
High-throughput characterization, correlation, and mapping of leaf photosynthetic and functional traits in the soybean (Glycine max) nested association mapping population. PMID:35451475
Large-Scale Integrative Analysis of Soybean Transcriptome Using an Unsupervised Autoencoder Model. PMID:35310659
Physiological breeding for yield improvement in soybean: solar radiation interception-conversion, and harvest index. PMID:35275253
MtWRP1, a Novel Fabacean Specific Gene, Regulates Root Nodulation and Plant Growth in Medicago truncatula. PMID:35205237
Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology. PMID:35197050
SorghumBase: a web-based portal for sorghum genetic information and community advancement. PMID:35015132
Genome-Wide Variation Analysis of Four Vegetable Soybean Cultivars Based on Re-Sequencing. PMID:35009032
Fine mapping and cloning of the major seed protein quantitative trait loci on soybean chromosome 20. PMID:34978122
Photosynthesis-related genes induce resistance against soybean mosaic virus: Evidence for involvement of the RNA silencing pathway. PMID:34962034
Novel QTL and Meta-QTL Mapping for Major Quality Traits in Soybean. PMID:34956271
Interaction between Rag genes results in a unique synergistic transcriptional response that enhances soybean resistance to soybean aphids. PMID:34895143
Bringing the Animal QTLdb and CorrDB into the future: meeting new challenges and providing updated services. PMID:34850103
Identification and validation of quantitative trait loci associated with seed yield in soybean. PMID:34776747
Comparing Early Transcriptomic Responses of 18 Soybean (Glycine max) Genotypes to Iron Stress. PMID:34769077
PCMDB: a curated and comprehensive resource of plant cell markers. PMID:34718712
The Soybean High Density 'Forrest' by 'Williams 82' SNP-Based Genetic Linkage Map Identifies QTL and Candidate Genes for Seed Isoflavone Content. PMID:34685837
Strategies to Assure Optimal Trade-Offs Among Competing Objectives for the Genetic Improvement of Soybean. PMID:34630507
Network Inference of Transcriptional Regulation in Germinating Low Phytic Acid Soybean Seeds. PMID:34531883
Plant and algal lysophosphatidic acid acyltransferases increase docosahexaenoic acid accumulation at the sn-2 position of triacylglycerol in transgenic Arabidopsis seed oil. PMID:34432852
Progress in soybean functional genomics over the past decade. PMID:34388296
Genome-Wide Association Study for Ultraviolet-B Resistance in Soybean (Glycine max L.). PMID:34210031
The membrane-localized protein kinase MAP4K4/TOT3 regulates thermomorphogenesis. PMID:33990595
The pan-genome of the cultivated soybean (PanSoy) reveals an extraordinarily conserved gene content. PMID:33942475
In silico Analysis of Acyl-CoA-Binding Protein Expression in Soybean. PMID:33936134
Crop breeding for a changing climate: integrating phenomics and genomics with bioinformatics. PMID:33852055
Novel resistance strategies to soybean cyst nematode (SCN) in wild soybean. PMID:33846373
Analysis of Shoot Architecture Traits in Edamame Reveals Potential Strategies to Improve Harvest Efficiency. PMID:33746998
A Genome-Wide Genetic Diversity Scan Reveals Multiple Signatures of Selection in a European Soybean Collection Compared to Chinese Collections of Wild and Cultivated Soybean Accessions. PMID:33732276
Genome-Wide Association Study of Topsoil Root System Architecture in Field-Grown Soybean [Glycine max (L.) Merr.]. PMID:33643326
Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. PMID:33558550
The patterns of deleterious mutations during the domestication of soybean. PMID:33397978
Genome-wide characterization and analysis of the CCT motif family genes in soybean (Glycine max). PMID:33392793
Comprehensive Genome-Wide Association Analysis Reveals the Genetic Basis of Root System Architecture in Soybean. PMID:33391303
Genetic variability and genome-wide association analysis of flavor and texture in cooked beans (Phaseolus vulgaris L.). PMID:33388888
Transforming the study of organisms: Phenomic data models and knowledge bases. PMID:33232313
Plant-ImputeDB: an integrated multiple plant reference panel database for genotype imputation. PMID:33137192
Comprehensive transcriptome profiling of Caragana microphylla in response to salt condition using de novo assembly. PMID:33026585
Meta-analysis of QTL reveals the genetic control of yield-related traits and seed protein content in pea. PMID:32985526
Identification of quantitative trait nucleotides and candidate genes for soybean seed weight by multiple models of genome-wide association study. PMID:32873245
Soybean (Glycine max) Haplotype Map (GmHapMap): a universal resource for soybean translational and functional genomics. PMID:32794321
Global Role of Crop Genomics in the Face of Climate Change. PMID:32765541
RGPDB: database of root-associated genes and promoters in maize, soybean, and sorghum. PMID:32500918
Identification of Alternative Mitochondrial Electron Transport Pathway Components in Chickpea Indicates a Differential Response to Salinity Stress between Cultivars. PMID:32481694
Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era. PMID:32384671
Genetic Architecture of Early Vigor Traits in Wild Soybean. PMID:32354037
A transcriptional regulatory network of Rsv3-mediated extreme resistance against Soybean mosaic virus. PMID:32315334
Genome-wide association analyses of quantitative disease resistance in diverse sets of soybean [Glycine max (L.) Merr.] plant introductions. PMID:32196522
Genome-Wide Association Analyses Reveal Genomic Regions Controlling Canopy Wilting in Soybean. PMID:32111650
Trait associations in the pangenome of pigeon pea (Cajanus cajan). PMID:32020732
On the Inverse Correlation of Protein and Oil: Examining the Effects of Altered Central Carbon Metabolism on Seed Composition Using Soybean Fast Neutron Mutants. PMID:31905618
Analysis of Soybean Long Non-Coding RNAs Reveals a Subset of Small Peptide-Coding Transcripts. PMID:31882456
Dissection of soybean populations according to selection signatures based on whole-genome sequences. PMID:31869408
Phenotype Prediction and Genome-Wide Association Study Using Deep Convolutional Neural Network of Soybean. PMID:31824557
Genome-wide association analyses reveal the genetic basis of biomass accumulation under symbiotic nitrogen fixation in African soybean. PMID:31822937
Integrated QTL mapping, gene expression and nucleotide variation analyses to investigate complex quantitative traits: a case study with the soybean-Phytophthora sojae interaction. PMID:31749312
The ABA-induced soybean ERF transcription factor gene GmERF75 plays a role in enhancing osmotic stress tolerance in Arabidopsis and soybean. PMID:31747904
Whole-genome resequencing identifies quantitative trait loci associated with mycorrhizal colonization of soybean. PMID:31707439
Unraveling the genetic architecture for carbon and nitrogen related traits and leaf hydraulic conductance in soybean using genome-wide association analyses. PMID:31694528
Genome-wide association study of the seed transmission rate of soybean mosaic virus and associated traits using two diverse population panels. PMID:31630210
Dynamic Changes in Genome-Wide Histone3 Lysine27 Trimethylation and Gene Expression of Soybean Roots in Response to Salt Stress. PMID:31552061
Pod-shattering characteristics differences between two groups of soybeans are associated with specific changes in gene expression. PMID:31456133
KnowPulse: A Web-Resource Focused on Diversity Data for Pulse Crop Improvement. PMID:31428111
Quantitative Trait Nucleotides Impacting the Technological Performances of Industrial Saccharomyces cerevisiae Strains. PMID:31396264
Screening populations for copy number variation using genotyping-by-sequencing: a proof of concept using soybean fast neutron mutants. PMID:31387530
Genome-wide genetic diversity is maintained through decades of soybean breeding in Canada. PMID:31384959
Identification and characterization of a fast-neutron-induced mutant with elevated seed protein content in soybean. PMID:31324928
Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment. PMID:31293610
QTL Analysis of Resistance to High-Intensity UV-B Irradiation in Soybean (Glycine max [L.] Merr.). PMID:31277435
Field-grown soybean transcriptome shows diurnal patterns in photosynthesis-related processes. PMID:31245700
Phenotypic Variation and Genetic Architecture for Photosynthesis and Water Use Efficiency in Soybean (Glycine max L. Merr). PMID:31178887
Analysis of miRNAs Targeted Storage Regulatory Genes during Soybean Seed Development Based on Transcriptome Sequencing. PMID:31142023
Genetic Mapping and Molecular Characterization of a Broad-spectrum Phytophthora sojae Resistance Gene in Chinese Soybean. PMID:31013701
Transcriptional and Chemical Changes in Soybean Leaves in Response to Long-Term Aphid Colonization. PMID:30930925
The Ethylene Signaling Pathway Negatively Impacts CBF/DREB-Regulated Cold Response in Soybean (Glycine max). PMID:30853961
Resistance against Sclerotinia sclerotiorum in soybean involves a reprogramming of the phenylpropanoid pathway and up-regulation of antifungal activity targeting ergosterol biosynthesis. PMID:30672092
Genetic dissection of domestication-related traits in soybean through genotyping-by-sequencing of two interspecific mapping populations. PMID:30607438
Identification of genomic loci associated with 21chlorophyll fluorescence phenotypes by genome-wide association analysis in soybean. PMID:30497384
Different loci associated with root and foliar resistance to sudden death syndrome (Fusarium virguliforme) in soybean. PMID:30446796
Analysis of Two New Arabinosyltransferases Belonging to the Carbohydrate-Active Enzyme (CAZY) Glycosyl Transferase Family1 Provides Insights into Disease Resistance and Sugar Donor Specificity. PMID:30429223
PlantPAN3.0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants. PMID:30395277
Systems biology of seeds: decoding the secret of biochemical seed factories for nutritional security. PMID:30370201
Bottlenecks for genome-edited crops on the road from lab to farm. PMID:30367679
Translational genomics and multi-omics integrated approaches as a useful strategy for crop breeding. PMID:30353370
WRKY transcription factors in legumes. PMID:30332991
Accelerating Soybean Breeding in a CO2-Supplemented Growth Chamber. PMID:30219921
Genetic Architecture of Soybean Yield and Agronomic Traits. PMID:30131329
Transcriptomic comparison reveals genetic variation potentially underlying seed developmental evolution of soybeans. PMID:30113693
Genome-wide analysis of genes encoding core components of the ubiquitin system in soybean (Glycine max) reveals a potential role for ubiquitination in host immunity against soybean cyst nematode. PMID:30021519
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
Chromosomal distribution of soybean retrotransposon SORE-1 suggests its recent preferential insertion into euchromatic regions. PMID:29789973
QTL mapping and epistatic interaction analysis of field resistance to sudden death syndrome (Fusarium virguliforme) in soybean. PMID:29766218
An atypical N-ethylmaleimide sensitive factor enables the viability of nematode-resistant Rhg1 soybeans. PMID:29695628
Mapping of new quantitative trait loci for sudden death syndrome and soybean cyst nematode resistance in two soybean populations. PMID:29582113
Genome-wide dissection and expression profiling of unique glyoxalase III genes in soybean reveal the differential pattern of transcriptional regulation. PMID:29555947
Identification of novel loci associated with maturity and yield traits in early maturity soybean plant introduction lines. PMID:29490606
Fine Mapping and Identification of a Novel Phytophthora Root Rot Resistance Locus RpsZS18 on Chromosome 2 in Soybean. PMID:29441079
Integration of sudden death syndrome resistance loci in the soybean genome. PMID:29435603
Genetic mapping and validation of the loci controlling 7S α' and 11S A-type storage protein subunits in soybean [Glycine max (L.) Merr.]. PMID:29224171
Genome-Wide Analysis of Grain Yield Stability and Environmental Interactions in a Multiparental Soybean Population. PMID:29217731
GWAS of agronomic traits in soybean collection included in breeding pool in Kazakhstan. PMID:29143671
Next-generation sequencing to identify candidate genes and develop diagnostic markers for a novel Phytophthora resistance gene, RpsHC18, in soybean. PMID:29138903
Fine mapping of the soybean aphid-resistance genes Rag6 and Rag3c from Glycine soja 85-32. PMID:28887657
Comprehensive description of genomewide nucleotide and structural variation in short-season soya bean. PMID:28869792
ODG: Omics database generator - a tool for generating, querying, and analyzing multi-omics comparative databases to facilitate biological understanding. PMID:28797229
The endogenous transposable element Tgm9 is suitable for generating knockout mutants for functional analyses of soybean genes and genetic improvement in soybean. PMID:28797084
Genome-wide identification of soybean microRNA responsive to soybean cyst nematodes infection by deep sequencing. PMID:28768484
Genetic Architecture of Flooding Tolerance in the Dry Bean Middle-American Diversity Panel. PMID:28729876
Mapping novel aphid resistance QTL from wild soybean, Glycine soja 85-32. PMID:28710504
Identification of QTL with large effect on seed weight in a selective population of soybean with genome-wide association and fixation index analyses. PMID:28701220
Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response. PMID:28687067
Seed weight differences between wild and domesticated soybeans are associated with specific changes in gene expression. PMID:28653111
Main and epistatic loci studies in soybean for Sclerotinia sclerotiorum resistance reveal multiple modes of resistance in multi-environments. PMID:28620159
Multiple organ gigantism caused by mutation in VmPPD gene in blackgram (Vigna mungo). PMID:28588392
Linkage mapping of Mungbean yellow mosaic India virus (MYMIV) resistance gene in soybean. PMID:28588385
The development and use of a molecular model for soybean maturity groups. PMID:28558691
Genome-Wide Analyses of the Soybean F-Box Gene Family in Response to Salt Stress. PMID:28417911
Mutations in Argonaute5 Illuminate Epistatic Interactions of the K1 and I Loci Leading to Saddle Seed Color Patterns in Glycine max. PMID:28351993
Identification of regulatory networks and hub genes controlling soybean seed set and size using RNA sequencing analysis. PMID:28087653
QTLomics in Soybean: A Way Forward for Translational Genomics and Breeding. PMID:28066449
Statistical Approaches for Gene Selection, Hub Gene Identification and Module Interaction in Gene Co-Expression Network Analysis: An Application to Aluminum Stress in Soybean (Glycine max L.). PMID:28056073
Components of the SNARE-containing regulon are co-regulated in root cells undergoing defense. PMID:28010187
Lotus Base: An integrated information portal for the model legume Lotus japonicus. PMID:28008948
Genome-Wide Analysis of Soybean JmjC Domain-Containing Proteins Suggests Evolutionary Conservation Following Whole-Genome Duplication. PMID:27994610
Integration of omics approaches to understand oil/protein content during seed development in oilseed crops. PMID:27796489
Tanscriptomic Study of the Soybean-Fusarium virguliforme Interaction Revealed a Novel Ankyrin-Repeat Containing Defense Gene, Expression of Whose during Infection Led to Enhanced Resistance to the Fungal Pathogen in Transgenic Soybean Plants. PMID:27760122
Genome-wide association mapping of partial resistance to Phytophthora sojae in soybean plant introductions from the Republic of Korea. PMID:27515508
Bioinformatics Approach in Plant Genomic Research. PMID:27499685
Evolution of an intron-poor cluster of the CIPK gene family and expression in response to drought stress in soybean. PMID:27311690
Integrating Large-Scale Data and RNA Technology to Protect Crops from Fungal Pathogens. PMID:27303409
Multi-Population Selective Genotyping to Identify Soybean [Glycine max (L.) Merr.] Seed Protein and Oil QTLs. PMID:27172185
Genome-Wide Identification, Classification, and Expression Analysis of Amino Acid Transporter Gene Family in Glycine Max. PMID:27148336
Molecular Mapping of D₁, D₂ and ms5 Revealed Linkage between the Cotyledon Color Locus D₂ and the Male-Sterile Locus ms5 in Soybean. PMID:27137386
Genome-wide analysis and expression profiling of glyoxalase gene families in soybean (Glycine max) indicate their development and abiotic stress specific response. PMID:27083416
Microsomal Omega-3 Fatty Acid Desaturase Genes in Low Linolenic Acid Soybean Line RG10 and Validation of Major Linolenic Acid QTL. PMID:27066063
Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean. PMID:26968518
Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing. PMID:26872939
Environmental Association Analyses Identify Candidates for Abiotic Stress Tolerance in Glycine soja, the Wild Progenitor of Cultivated Soybeans. PMID:26818076
Genome-wide identification of calcium-dependent protein kinases in soybean and analyses of their transcriptional responses to insect herbivory and drought stress. PMID:26733237
Pyramids of QTLs enhance host-plant resistance and Bt-mediated resistance to leaf-chewing insects in soybean. PMID:26724806
Identification of haplotypes at the Rsv4 genomic region in soybean associated with durable resistance to soybean mosaic virus. PMID:26649868
Expanding Omics Resources for Improvement of Soybean Seed Composition Traits. PMID:26635846
LegumeIP 2.0--a platform for the study of gene function and genome evolution in legumes. PMID:26578557
Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family. PMID:26546515
Genome-wide analysis and expression profiling under heat and drought treatments of HSP70 gene family in soybean (Glycine max L.). PMID:26442082
Association Mapping of Total Carotenoids in Diverse Soybean Genotypes Based on Leaf Extracts and High-Throughput Canopy Spectral Reflectance Measurements. PMID:26368323
Translational genomics for plant breeding with the genome sequence explosion. PMID:26269219
RiTE database: a resource database for genus-wide rice genomics and evolutionary biology. PMID:26194356
Genome Regions Associated with Functional Performance of Soybean Stem Fibers in Polypropylene Thermoplastic Composites. PMID:26167917
RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean. PMID:26040850
Identification of quantitative trait loci underlying resistance to southern root-knot and reniform nematodes in soybean accession PI 567516C. PMID:26028986
Detection of novel QTLs for foxglove aphid resistance in soybean. PMID:25904004
NexGenEx-Tom: a gene expression platform to investigate the functionalities of the tomato genome. PMID:25849067
Genetic variants in root architecture-related genes in a Glycine soja accession, a potential resource to improve cultivated soybean. PMID:25765991
Identification of novel QTL governing root architectural traits in an interspecific soybean population. PMID:25756528
A systems biology approach toward understanding seed composition in soybean. PMID:25708381
Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean. PMID:25643055
Draft genome sequence of adzuki bean, Vigna angularis. PMID:25626881
ocsESTdb: a database of oil crop seed EST sequences for comparative analysis and investigation of a global metabolic network and oil accumulation metabolism. PMID:25604238
Soybean Fe-S cluster biosynthesis regulated by external iron or phosphate fluctuation. PMID:25515083
Genome-wide analysis of the Hsf family in soybean and functional identification of GmHsf-34 involvement in drought and heat stresses. PMID:25416131
The IQD gene family in soybean: structure, phylogeny, evolution and expression. PMID:25343341
Identification and evaluation of quantitative trait loci underlying resistance to multiple HG types of soybean cyst nematode in soybean PI 437655. PMID:25316311
Genome resilience and prevalence of segmental duplications following fast neutron irradiation of soybean. PMID:25213171
Genome-wide annotation of the soybean WRKY family and functional characterization of genes involved in response to Phakopsora pachyrhizi infection. PMID:25201117
Selection and molecular characterization of a lipoxygenase-free soybean mutant line induced by gamma irradiation. PMID:25190478
Changes in RNA Splicing in Developing Soybean (Glycine max) Embryos. PMID:24833227
RNA-Seq profiling of a defective seed coat mutation in Glycine max reveals differential expression of proline-rich and other cell wall protein transcripts. PMID:24828743
SFGD: a comprehensive platform for mining functional information from soybean transcriptome data and its use in identifying acyl-lipid metabolism pathways. PMID:24712981
SoyFN: a knowledge database of soybean functional networks. PMID:24618044
Genome-wide analysis of soybean HD-Zip gene family and expression profiling under salinity and drought treatments. PMID:24498296
Genetic analysis and fine mapping of RpsJS, a novel resistance gene to Phytophthora sojae in soybean [Glycine max (L.) Merr]. PMID:24419901
Recent achievement in gene cloning and functional genomics in soybean. PMID:24311973
Soybean knowledge base (SoyKB): a web resource for integration of soybean translational genomics and molecular breeding. PMID:24136998
Genome-wide analysis of the Hsp20 gene family in soybean: comprehensive sequence, genomic organization and expression profile analysis under abiotic and biotic stresses. PMID:23985061
FmMDb: a versatile database of foxtail millet markers for millets and bioenergy grasses research. PMID:23951158
Silicon era of carbon-based life: application of genomics and bioinformatics in crop stress research. PMID:23759993
Genome-wide expression analysis of soybean MADS genes showing potential function in the seed development. PMID:23638026
Association Studies and Legume Synteny Reveal Haplotypes Determining Seed Size in Vigna unguiculata. PMID:23596454
Next-generation phenotyping: requirements and strategies for enhancing our understanding of genotype-phenotype relationships and its relevance to crop improvement. PMID:23471459
Genome-wide identification and analysis of the B3 superfamily of transcription factors in Brassicaceae and major crop plants. PMID:23377560
DaizuBase, an integrated soybean genome database including BAC-based physical maps. PMID:23136506
Divergence of flowering genes in soybean. PMID:23107921
Dissection of two soybean QTL conferring partial resistance to Phytophthora sojae through sequence and gene expression analysis. PMID:22925529
Genome-wide mapping of NBS-LRR genes and their association with disease resistance in soybean. PMID:22877146
Computational and experimental analyses of retrotransposon-associated minisatellite DNAs in the soybean genome. PMID:22536864
Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics. PMID:22369646
Advances in omics and bioinformatics tools for systems analyses of plant functions. PMID:22156726
Genome-wide survey and expression analysis of the plant-specific NAC transcription factor family in soybean during development and dehydration stress. PMID:21685489
MaizeGDB: curation and outreach go hand-in-hand. PMID:21624896
In silico characterization and expression analysis of the multigene family encoding the Bowman-Birk protease inhibitor in soybean. PMID:21556767
Phenotypic and genomic analyses of a fast neutron mutant population resource in soybean. PMID:21321255
Molecular basis of seed lipoxygenase null traits in soybean line OX948. PMID:21243331
Genome-wide analysis of two-component systems and prediction of stress-responsive two-component system members in soybean. PMID:20817745
Functional genomics of soybean for improvement of productivity in adverse conditions. PMID:20582712
Novel quantitative trait loci for broad-based resistance to soybean cyst nematode (Heterodera glycines Ichinohe) in soybean PI 567516C. PMID:20559815
SoyTEdb: a comprehensive database of transposable elements in the soybean genome. PMID:20163715 - https://doi.org/10.1093/nar/gkaa1107
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Tags
More detailed information about this field from each metasource.
computational predictions
metasource: Fairsharing.org
version: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
differential gene expression analysis
metasource: Fairsharing.org
version: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
image
metasource: Fairsharing.org
version: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
quantitative trait loci
metasource: Fairsharing.org
version: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
single nucleotide polymorphism
metasource: Fairsharing.org
version: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
transposable element
metasource: Fairsharing.org
version: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
other plants
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
php (computer program language)
metasource: re3data.org
version: re3data.org: SoyBase; editing status 2022-01-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S032 last accessed: 2022-11-04
genetics
metasource: re3data.org
version: re3data.org: SoyBase; editing status 2022-01-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S032 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.505738
genomics
metasource: re3data.org
version: re3data.org: SoyBase; editing status 2022-01-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S032 last accessed: 2022-11-04
legumes
metasource: re3data.org
version: re3data.org: SoyBase; editing status 2022-01-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S032 last accessed: 2022-11-04
sequences
metasource: re3data.org
version: re3data.org: SoyBase; editing status 2022-01-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S032 last accessed: 2022-11-04
soybean
metasource: re3data.org
version: re3data.org: SoyBase; editing status 2022-01-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S032 last accessed: 2022-11-04
mapping
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.505738
genotype and phenotype
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.505738
plant biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.505738
quantitative genetics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.505738
Tags
More detailed information about this field from each metasource.
computational predictions
metasource: Fairsharing.orgversion: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
differential gene expression analysis
metasource: Fairsharing.orgversion: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
image
metasource: Fairsharing.orgversion: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
quantitative trait loci
metasource: Fairsharing.orgversion: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
single nucleotide polymorphism
metasource: Fairsharing.orgversion: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
transposable element
metasource: Fairsharing.orgversion: FAIRsharing.org: SoyBase; SoyBase; DOI: https://doi.org/10.25504/FAIRsharing.z4agsr; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
other plants
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
php (computer program language)
metasource: re3data.orgversion: re3data.org: SoyBase; editing status 2022-01-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S032 last accessed: 2022-11-04
genetics
metasource: re3data.orgversion: re3data.org: SoyBase; editing status 2022-01-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S032 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.505738
genomics
metasource: re3data.orgversion: re3data.org: SoyBase; editing status 2022-01-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S032 last accessed: 2022-11-04
legumes
metasource: re3data.orgversion: re3data.org: SoyBase; editing status 2022-01-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S032 last accessed: 2022-11-04
sequences
metasource: re3data.orgversion: re3data.org: SoyBase; editing status 2022-01-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S032 last accessed: 2022-11-04
soybean
metasource: re3data.orgversion: re3data.org: SoyBase; editing status 2022-01-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3S032 last accessed: 2022-11-04
mapping
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:33.505738
genotype and phenotype
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:33.505738
plant biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:33.505738
quantitative genetics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:33.505738
computational predictions dna differential gene expression analysis genome phenotype protein quantitative trait loci single nucleotide polymorphism transposable element plant other plants php (computer program language) genetics genomics legumes sequences soybean mapping genotype and phenotype plant biology quantitative genetics
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