R3NS78 last accessed: 2022-11-04

pombase
metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:15.550959

Other names: Pombase, The scientific resource for fission yeast, pombase

PomBase is a model organism database that provides organization of and access to scientific data for the fission yeast Schizosaccharomyces pombe. PomBase supports genomic sequence and features, genome-wide datasets and manual literature curation as well as providing structural and functional annotation and access to large-scale data sets.

Webpage:

http://www.pombase.org

Licence:

Name: Creative Commons Attribution 4.0 International (CC BY 4.0)
URL: https://creativecommons.org/licenses/by/4.0/

Publications: (10)

Publications
More detailed information about this field from each metasource.

Gene Ontology annotations and resources
PMID: 23161678
metasource: Fairsharing.org
version: FAIRsharing.org: PomBase; PomBase; DOI: https://doi.org/10.25504/FAIRsharing.8jsya3; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

PomBase: a comprehensive online resource for fission yeast
PMID: 22039153
metasource: Fairsharing.org
version: FAIRsharing.org: PomBase; PomBase; DOI: https://doi.org/10.25504/FAIRsharing.8jsya3; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

The Gene Ontology: enhancements for 2011
PMID: 22102568
metasource: Fairsharing.org
version: FAIRsharing.org: PomBase; PomBase; DOI: https://doi.org/10.25504/FAIRsharing.8jsya3; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

PomBase 2015: updates to the fission yeast database
PMID: 25361970
metasource: Fairsharing.org
version: FAIRsharing.org: PomBase; PomBase; DOI: https://doi.org/10.25504/FAIRsharing.8jsya3; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

A method for increasing expressivity of Gene Ontology annotations using a compositional approach
PMID: 24885854
metasource: Fairsharing.org
version: FAIRsharing.org: PomBase; PomBase; DOI: https://doi.org/10.25504/FAIRsharing.8jsya3; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

FYPO: the fission yeast phenotype ontology
PMID: 23658422
metasource: Fairsharing.org
version: FAIRsharing.org: PomBase; PomBase; DOI: https://doi.org/10.25504/FAIRsharing.8jsya3; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

Canto: an online tool for community literature curation
PMID: 24574118
metasource: Fairsharing.org
version: FAIRsharing.org: PomBase; PomBase; DOI: https://doi.org/10.25504/FAIRsharing.8jsya3; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

Model organism databases: essential resources that need the support of both funders and users
PMID: 27334346
metasource: Fairsharing.org
version: FAIRsharing.org: PomBase; PomBase; DOI: https://doi.org/10.25504/FAIRsharing.8jsya3; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications
PMID: 32353878
metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:15.550959

http://dx.doi.org/10.1093/nar/gku1040
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Gene Ontology annotations and resources PubMed citations: 292.

292 articles citing: Gene Ontology annotations and resources

Downregulation of PGM5 expression correlates with tumor progression and poor prognosis in human prostate cancer. PMID:35819729
Transcriptome Analysis Reveals Crosstalk between the Abscisic Acid and Jasmonic Acid Signaling Pathways in Rice-Mediated Defense against Nilaparvata lugens. PMID:35682997
METTL3 Is Associated With the Malignancy of Esophageal Squamous Cell Carcinoma and Serves as a Potential Immunotherapy Biomarker. PMID:35574315
Transcriptomic Analysis of Fumarate Compounds Identifies Unique Effects of Isosorbide Di-(Methyl Fumarate) on NRF2, NF-kappaB and IRF1 Pathway Genes. PMID:35455458
The Prognostic Signature of Head and Neck Squamous Cell Carcinoma Constructed by Immune-Related RNA-Binding Proteins. PMID:35449571
Genetic Modeling and Genomic Analyses of Yearling Temperament in American Angus Cattle and Its Relationship With Productive Efficiency and Resilience Traits. PMID:35444687
PASS2.7: a database containing structure-based sequence alignments and associated features of protein domain superfamilies from SCOPe. PMID:35411388
GOntoSim: a semantic similarity measure based on LCA and common descendants. PMID:35264663
Tumor ENPP1 (CD203a)/Haptoglobin Axis Exploits Myeloid-Derived Suppressor Cells to Promote Post-Radiotherapy Local Recurrence in Breast Cancer. PMID:35191482
NonLoss: a novel analytical method for differential biological module identification from single-cell transcriptome. PMID:35071482
A novel gene functional similarity calculation model by utilizing the specificity of terms and relationships in gene ontology. PMID:35057740
A Sensitization-Free Dimethyl Fumarate Prodrug, Isosorbide Di-(Methyl Fumarate), Provides a Topical Treatment Candidate for Psoriasis. PMID:34909741
Prognostic characterization of immune molecular subtypes in non-small cell lung cancer to immunotherapy. PMID:34844602
Homozygous duplication identified by whole genome sequencing causes LRBA deficiency. PMID:34795304
PHI-base in 2022: a multi-species phenotype database for Pathogen-Host Interactions. PMID:34788826
Neuroprotective effects of long noncoding RNAs involved in ischemic postconditioning after ischemic stroke. PMID:34782575
Tomato leaves under stress: a comparison of stress response to mild abiotic stress between a cultivated and a wild tomato species. PMID:34677706
A differential DNA methylome signature of pulmonary immune cells from individuals converting to latent tuberculosis infection. PMID:34593857
Transcriptome Adaptation of the Ovine Mammary Gland to Dietary Supplementation of Extruded Linseed. PMID:34573673
Utilization of Transcriptome, Small RNA, and Degradome Sequencing to Provide Insights Into Drought Stress and Rewatering Treatment in Medicago ruthenica. PMID:34413864
The Prognostic Value of the DNA Repair Gene Signature in Head and Neck Squamous Cell Carcinoma. PMID:34395285
The brain transcriptome of the wolf spider, Schizocosa ocreata. PMID:34162407
Interplay between SARS-CoV-2-derived miRNAs, immune system, vitamin D pathway and respiratory system. PMID:34159729
Multi Locus View: an extensible web-based tool for the analysis of genomic data. PMID:34035422
A five-gene signature for predicting overall survival of esophagus adenocarcinoma. PMID:33832101
De novo Prediction of Moonlighting Proteins Using Multimodal Deep Ensemble Learning. PMID:33828582
Combined Genome, Transcriptome and Metabolome Analysis in the Diagnosis of Childhood Cerebellar Ataxia. PMID:33804237
A Systematic Review of Genomic Regions and Candidate Genes Underlying Behavioral Traits in Farmed Mammals and Their Link with Human Disorders. PMID:33800722
Enhanced anti-inflammatory effects of mesenchymal stromal cells mediated by the transient ectopic expression of CXCR4 and IL10. PMID:33579367
System Pharmacology-Based Strategy to Decode the Synergistic Mechanism of GanDouLing for Wilson's Disease. PMID:33564316
Comparing the hippocampal miRNA expression profiles of wild and domesticated Chinese tree shrews (Tupaia belangeri chinensis). PMID:33514308
Transcriptome Remodeling in Gradual Development of Inverse Resistance between Paclitaxel and Cisplatin in Ovarian Cancer Cells. PMID:33287223
The Zebrafish Perivitelline Fluid Provides Maternally-Inherited Defensive Immunity. PMID:32899417
Identifying disease-associated signaling pathways through a novel effector gene analysis. PMID:32864216
The Biological Significance of Multi-copy Regions and Their Impact on Variant Discovery. PMID:32827758
Salt stress induces endoplasmic reticulum stress-responsive genes in a grapevine rootstock. PMID:32730292
RNA Sequencing for Gene Expression Profiles in Peripheral Blood Mononuclear Cells with Ankylosing Spondylitis RNA. PMID:32596323
Chromosome-level reference genome of the jellyfish Rhopilema esculentum. PMID:32315029
Association of a Reproducible Epigenetic Risk Profile for Schizophrenia With Brain Methylation and Function. PMID:32049268
Evaluating liquid biopsies for methylomic profiling of prostate cancer. PMID:32000564
Transcriptome analysis reveals an important candidate gene involved in both nodal metastasis and prognosis in lung adenocarcinoma. PMID:31827762
A novel miRNA-4484 is up-regulated on microarray and associated with increased MMP-21 expression in serum of systemic sclerosis patients. PMID:31582779
Integrated analysis of quantitative proteome and transcriptional profiles reveals abnormal gene expression and signal pathway in bladder cancer. PMID:31576517
Co-culture With Human Breast Adipocytes Differentially Regulates Protein Abundance in Breast Cancer Cells. PMID:31467226
UNIPred-Web: a web tool for the integration and visualization of biomolecular networks for protein function prediction. PMID:31412768
Integrated analyses of microRNA-29 family and the related combination biomarkers demonstrate their widespread influence on risk, recurrence, metastasis and survival outcome in colorectal cancer. PMID:31346316
RNA-seq reveals outcome-specific gene expression of MMP7 and PCK1 in biliary atresia. PMID:31342296
Bioinformatics analysis of a long non‑coding RNA and mRNA regulation network in rats with middle cerebral artery occlusion based on RNA sequencing. PMID:31180537
Gene set enrichment for reproducible science: comparison of CERNO and eight other algorithms. PMID:31165139
ALS blood expression profiling identifies new biomarkers, patient subgroups, and evidence for neutrophilia and hypoxia. PMID:31118040
EcRBPome: a comprehensive database of all known E. coli RNA-binding proteins. PMID:31117939
Reversal of Vocal Fold Mucosal Fibrosis Using siRNA against the Collagen-Specific Chaperone Serpinh1. PMID:31100613
Whole genome sequencing reveals the impact of recent artificial selection on red sea bream reared in fish farms. PMID:31019228
Identification and functional analysis of microRNAs in rats following focal cerebral ischemia injury. PMID:30896823
PASS2 version 6: a database of structure-based sequence alignments of protein domain superfamilies in accordance with SCOPe. PMID:30820573
Functional annotation of putative QTL associated with black tea quality and drought tolerance traits. PMID:30728388
Extracellular vesicles from Kaposi Sarcoma-associated herpesvirus lymphoma induce long-term endothelial cell reprogramming. PMID:30716130
Biological Interpretation of Complex Genomic Data. PMID:30649721
Functional genomics of the digestive tract in broilers. PMID:30545300
GM604 regulates developmental neurogenesis pathways and the expression of genes associated with amyotrophic lateral sclerosis. PMID:30524706
Gene ontology improves template selection in comparative protein docking. PMID:30520123
ECO, the Evidence & Conclusion Ontology: community standard for evidence information. PMID:30407590
Gene ontology concept recognition using named concept: understanding the various presentations of the gene functions in biomedical literature. PMID:30376045
Aberrant splicing in B-cell acute lymphoblastic leukemia. PMID:30357359
Genome-wide identification and characterization of CONSTANS-like gene family in radish (Raphanus sativus). PMID:30248137
Comprehensive analysis of the whole coding and non-coding RNA transcriptome expression profiles and construction of the circRNA-lncRNA co-regulated ceRNA network in laryngeal squamous cell carcinoma. PMID:30128795
Unraveling the Plasmodium vivax sporozoite transcriptional journey from mosquito vector to human host. PMID:30111801
"Super Gene Set" Causal Relationship Discovery from Functional Genomics Data. PMID:30040650
RNA Sequencing and Pathway Analysis Identify Important Pathways Involved in Hypertrichosis and Intellectual Disability in Patients with Wiedemann-Steiner Syndrome. PMID:30014449
Onto2Vec: joint vector-based representation of biological entities and their ontology-based annotations. PMID:29949999
Elevated histone H3 acetylation is associated with genes involved in T lymphocyte activation and glutamate decarboxylase antibody production in patients with type 1 diabetes. PMID:29791073
WEGO 2.0: a web tool for analyzing and plotting GO annotations, 2018 update. PMID:29788377
A Multi-Omics Database for Parasitic Nematodes and Trematodes. PMID:29761465
CircRNAs in the tree shrew (Tupaia belangeri) brain during postnatal development and aging. PMID:29723158
The draft genome sequence of forest musk deer (Moschus berezovskii). PMID:29635287
Comparative transcriptome profiling of the human and mouse dorsal root ganglia: an RNA-seq-based resource for pain and sensory neuroscience research. PMID:29561359
Hydrogen sulfide mediates athero-protection against oxidative stress via S-sulfhydration. PMID:29518145
Comparative transcriptome analysis reveals molecular response to salinity stress of salt-tolerant and sensitive genotypes of indica rice at seedling stage. PMID:29391416
Transcriptome profiling of lentil (Lens culinaris) through the first 24 hours of Ascochyta lentis infection reveals key defence response genes. PMID:29385986
Identification of differentially expressed molecular functions associated with breast cancer using Gibbs sampling. PMID:29344193
Genome-Wide Methylation Patterns in Androgen-Independent Prostate Cancer Cells: A Comprehensive Analysis Combining MeDIP-Bisulfite, RNA, and microRNA Sequencing Data. PMID:29324665
Reversible dual inhibitor against G9a and DNMT1 improves human iPSC derivation enhancing MET and facilitating transcription factor engagement to the genome. PMID:29281720
Ten quick tips for machine learning in computational biology. PMID:29234465
Genomic characterization of a new endophytic Streptomyces kebangsaanensis identifies biosynthetic pathway gene clusters for novel phenazine antibiotic production. PMID:29201559
Identification of key genes in glioma CpG island methylator phenotype via network analysis of gene expression data. PMID:29152649
Fusing multiple protein-protein similarity networks to effectively predict lncRNA-protein interactions. PMID:29072138
Establishing multiple omics baselines for three Southeast Asian populations in the Singapore Integrative Omics Study. PMID:28935855
Unravelling the biology of chromatin in health and cancer using proteomic approaches. PMID:28895440
Comparative proteomic analysis of autotetraploid and diploid Paulownia tomentosa reveals proteins associated with superior photosynthetic characteristics and stress adaptability in autotetraploid Paulownia. PMID:28878499
Identification of the SOX2 Interactome by BioID Reveals EP300 as a Mediator of SOX2-dependent Squamous Differentiation and Lung Squamous Cell Carcinoma Growth. PMID:28794006
A neurogenetic model for the study of schizophrenia spectrum disorders: the International 22q11.2 Deletion Syndrome Brain Behavior Consortium. PMID:28761081
Identification of key genes in Gram‑positive and Gram‑negative sepsis using stochastic perturbation. PMID:28714002
A genome-wide association scan of biological processes involved in oral lichen planus and oral squamous cell carcinoma. PMID:28640079
Bioinformatics analysis of dysregulated microRNAs in the nipple discharge of patients with breast cancer. PMID:28521415
Large-scale detection of drug off-targets: hypotheses for drug repurposing and understanding side-effects. PMID:28449705
Large-scale collection of full-length cDNA and transcriptome analysis in Hevea brasiliensis. PMID:28431015
Whole-genome sequencing suggests mechanisms for 22q11.2 deletion-associated Parkinson's disease. PMID:28430790
Bioinformatics analysis of gene expression alterations in microRNA‑122 knockout mice with hepatocellular carcinoma. PMID:28393247
The anatomy of phenotype ontologies: principles, properties and applications. PMID:28387809
Selecting high-quality negative samples for effectively predicting protein-RNA interactions. PMID:28361676
Genome-wide identification of conserved intronic non-coding sequences using a Bayesian segmentation approach. PMID:28347272
NaviGO: interactive tool for visualization and functional similarity and coherence analysis with gene ontology. PMID:28320317
Differential Transcriptional Regulation in Roots of Tomato Near-Isogenic Lines in Response to Rapid-Onset Water Stress. PMID:28270818
Medical Subject Heading (MeSH) annotations illuminate maize genetics and evolution. PMID:28250803
Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants. PMID:28228535
Direct experimental manipulation of intestinal cells in Ascaris suum, with minor influences on the global transcriptome. PMID:28223178
An integrative approach unveils FOSL1 as an oncogene vulnerability in KRAS-driven lung and pancreatic cancer. PMID:28220783
HAPPI-2: a Comprehensive and High-quality Map of Human Annotated and Predicted Protein Interactions. PMID:28212602
SPANG: a SPARQL client supporting generation and reuse of queries for distributed RDF databases. PMID:28178937
Genome Sequence of Christensenella minuta DSM 22607T. PMID:28082495
Cancer Progression Prediction Using Gene Interaction Regularized Elastic Net. PMID:28055897
Semaphorin 4C: A Novel Component of B-Cell Polarization in Th2-Driven Immune Responses. PMID:28003812
Datasets for the validation of the "in vivo" siRNA-silencing of CD40 and for the detection of new markers of atherosclerosis progression in ApoE-deficient mice. PMID:27924297
Function-driven discovery of disease genes in zebrafish using an integrated genomics big data resource. PMID:27903883
Transcriptome Dynamics in Mango Fruit Peel Reveals Mechanisms of Chilling Stress. PMID:27812364
Cluster Analysis of p53 Binding Site Sequences Reveals Subsets with Different Functions. PMID:27812278
Introducing the Big Knowledge to Use (BK2U) challenge. PMID:27750400
RStrucFam: a web server to associate structure and cognate RNA for RNA-binding proteins from sequence information. PMID:27717309
MiR-125a-3p timely inhibits oligodendroglial maturation and is pathologically up-regulated in human multiple sclerosis. PMID:27698367
A drug target slim: using gene ontology and gene ontology annotations to navigate protein-ligand target space in ChEMBL. PMID:27678076
The Tetraodon nigroviridis reference transcriptome: developmental transition, length retention and microsynteny of long non-coding RNAs in a compact vertebrate genome. PMID:27628538
Comparative analysis of transcriptomes in aerial stems and roots of Ephedra sinica based on high-throughput mRNA sequencing. PMID:27625990
Comparative proteomic analysis reveals alterations in development and photosynthesis-related proteins in diploid and triploid rice. PMID:27619227
Head Transcriptomes of Two Closely Related Species of Fruit Flies of the Anastrepha fraterculus Group Reveals Divergent Genes in Species with Extensive Gene Flow. PMID:27558666
Systems-level effects of ectopic galectin-7 reconstitution in cervical cancer and its microenvironment. PMID:27558259
Network analysis and juvenile idiopathic arthritis (JIA): a new horizon for the understanding of disease pathogenesis and therapeutic target identification. PMID:27411317
Reannotation of Yersinia pestis Strain 91001 Based on Omics Data. PMID:27382076
Gene regulation knowledge commons: community action takes care of DNA binding transcription factors. PMID:27270715
Weighted mutual information analysis substantially improves domain-based functional network models. PMID:27207946
Single-cell-type quantitative proteomic and ionomic analysis of epidermal bladder cells from the halophyte model plant Mesembryanthemum crystallinum to identify salt-responsive proteins. PMID:27160145
ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information. PMID:27153652
Genome-scale prediction of moonlighting proteins using diverse protein association information. PMID:27153604
Fungal and host transcriptome analysis of pH-regulated genes during colonization of apple fruits by Penicillium expansum. PMID:27146851
An examination of the regulatory mechanism of Pxdn mutation-induced eye disorders using microarray analysis. PMID:27121343
From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF. PMID:27114493
UbiNet: an online resource for exploring the functional associations and regulatory networks of protein ubiquitylation. PMID:27114492
Modeling fibrosis using fibroblasts isolated from scarred rat vocal folds. PMID:27111284
Requirements for the formal representation of pathophysiology mechanisms by clinicians. PMID:27051514
CTCF-mediated chromatin loops enclose inducible gene regulatory domains. PMID:27004515
Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies. PMID:26988001
Transcriptome analysis reveals differentially expressed genes associated with germ cell and gonad development in the Southern bluefin tuna (Thunnus maccoyii). PMID:26965070
RNA sequencing to characterize transcriptional changes of sexual maturation and mating in the female oriental fruit fly Bactrocera dorsalis. PMID:26946038
Low Dose Iron Treatments Induce a DNA Damage Response in Human Endothelial Cells within Minutes. PMID:26866805
The Arabidopsis transcriptional regulator DPB3-1 enhances heat stress tolerance without growth retardation in rice. PMID:26841113
A new scheme to discover functional associations and regulatory networks of E3 ubiquitin ligases. PMID:26818115
Advanced Running Performance by Genetic Predisposition in Male Dummerstorf Marathon Mice (DUhTP) Reveals Higher Sterol Regulatory Element-Binding Protein (SREBP) Related mRNA Expression in the Liver and Higher Serum Levels of Progesterone. PMID:26799318
Diverse Hormone Response Networks in 41 Independent Drosophila Cell Lines. PMID:26772746
Mitochondrial iron chelation ameliorates cigarette smoke-induced bronchitis and emphysema in mice. PMID:26752519
LEGO: a novel method for gene set over-representation analysis by incorporating network-based gene weights. PMID:26750448
Bioinformatics identification of potentially involved microRNAs in Tibetan with gastric cancer based on microRNA profiling. PMID:26692821
Dynamic Proteomic Analysis of Pancreatic Mesenchyme Reveals Novel Factors That Enhance Human Embryonic Stem Cell to Pancreatic Cell Differentiation. PMID:26681951
Expressed Sequence Tags Analysis and Design of Simple Sequence Repeats Markers from a Full-Length cDNA Library in Perilla frutescens (L.). PMID:26664999
ALCOdb: Gene Coexpression Database for Microalgae. PMID:26644461
The Saccharomyces Genome Database: A Tool for Discovery. PMID:26631132
The Saccharomyces Genome Database: Gene Product Annotation of Function, Process, and Component. PMID:26631125
Identification of minimal eukaryotic introns through GeneBase, a user-friendly tool for parsing the NCBI Gene databank. PMID:26581719
PASS2 database for the structure-based sequence alignment of distantly related SCOP domain superfamilies: update to version 5 and added features. PMID:26553811
Application of Functional Genomics for Bovine Respiratory Disease Diagnostics. PMID:26526746
CompGO: an R package for comparing and visualizing Gene Ontology enrichment differences between DNA binding experiments. PMID:26329719
Inntags: small self-structured epitopes for innocuous protein tagging. PMID:26322837
In Vivo Effects of Mesenchymal Stromal Cells in Two Patients With Severe Acute Respiratory Distress Syndrome. PMID:26285659
Evaluating the Hypoxia Response of Ruffe and Flounder Gills by a Combined Proteome and Transcriptome Approach. PMID:26273839
Potential anti-cancer effect of curcumin in human lung squamous cell carcinoma. PMID:26273408
Differential Proteomic Analysis Using iTRAQ Reveals Alterations in Hull Development in Rice (Oryza sativa L.). PMID:26230730
Biological processes and pathway changes in isoflurane-induced anesthesia revealed by bioinformatics analysis of gene expression profiles. PMID:26223573
The Arabidopsis information resource: Making and mining the "gold standard" annotated reference plant genome. PMID:26201819
Three-dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues. PMID:26179415
Comparison of Gene Coexpression Profiles and Construction of Conserved Gene Networks to Find Functional Modules. PMID:26147120
Transcriptome response signatures associated with the overexpression of a mitochondrial uncoupling protein (AtUCP1) in tobacco. PMID:26106890
The Disease Ontology: fostering interoperability between biological and clinical human disease-related data. PMID:26093607
Comparative genomic and phenomic analysis of Clostridium difficile and Clostridium sordellii, two related pathogens with differing host tissue preference. PMID:26059449
Summarizing and visualizing structural changes during the evolution of biomedical ontologies using a Diff Abstraction Network. PMID:26048076
The mouse gene expression database: New features and how to use them effectively. PMID:26045019
A novel software architecture for the provision of context-aware semantic transport information. PMID:26016915
Differential Gene Expression Profiling of Dystrophic Dog Muscle after MuStem Cell Transplantation. PMID:25955839
FlyNet: a versatile network prioritization server for the Drosophila community. PMID:25943544
The SwissLipids knowledgebase for lipid biology. PMID:25943471
Hierarchical ensemble methods for protein function prediction. PMID:25937954
Pathway reporter genes define molecular phenotypes of human cells. PMID:25903797
Iterative carotenogenic screens identify combinations of yeast gene deletions that enhance sclareol production. PMID:25903744
The role of ontologies in biological and biomedical research: a functional perspective. PMID:25863278
Shared resources, shared costs--leveraging biocuration resources. PMID:25776020
The Open Physiology workflow: modeling processes over physiology circuitboards of interoperable tissue units. PMID:25759670
Transcription factor and microRNA-regulated network motifs for cancer and signal transduction networks. PMID:25707690
Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study. PMID:25652942
EcoliNet: a database of cofunctional gene network for Escherichia coli. PMID:25650278
Annotation of proteins of unknown function: initial enzyme results. PMID:25630330
Using comparative genomics to drive new discoveries in microbiology. PMID:25617609
Microarray-based characterization of differential gene expression during vocal fold wound healing in rats. PMID:25592437
POEAS: Automated Plant Phenomic Analysis Using Plant Ontology. PMID:25574136
Exhaustive data mining comparison of the effects of low doses of ionizing radiation, formaldehyde and dioxins. PMID:25563934
An integrative approach for measuring semantic similarities using gene ontology. PMID:25559943
MOROKOSHI: transcriptome database in Sorghum bicolor. PMID:25505007
Genome-scale identification and characterization of moonlighting proteins. PMID:25497125
Methodology for the inference of gene function from phenotype data. PMID:25495798
Transcriptome sequencing reveals the virulence and environmental genetic programs of Vibrio vulnificus exposed to host and estuarine conditions. PMID:25489854
The conserved histone deacetylase Rpd3 and its DNA binding subunit Ume6 control dynamic transcript architecture during mitotic growth and meiotic development. PMID:25477386
Parallel profiling of fission yeast deletion mutants for proliferation and for lifespan during long-term quiescence. PMID:25452419
Estrogen receptor alpha drives proliferation in PTEN-deficient prostate carcinoma by stimulating survival signaling, MYC expression and altering glucose sensitivity. PMID:25436982
An ontology for microbial phenotypes. PMID:25433798
Genes regulating lipid and protein metabolism are highly expressed in mammary gland of lactating dairy goats. PMID:25433708
Gene Ontology Consortium: going forward. PMID:25428369
The BioGRID interaction database: 2015 update. PMID:25428363
Proteomics-Based Identification of Differentially Abundant Proteins from Human Keratinocytes Exposed to Arsenic Trioxide. PMID:25419056
BioModels: ten-year anniversary. PMID:25414348
The Pathogen-Host Interactions database (PHI-base): additions and future developments. PMID:25414340
ProteomeScout: a repository and analysis resource for post-translational modifications and proteins. PMID:25414335
Araport: the Arabidopsis information portal. PMID:25414324
PoSSuM v.2.0: data update and a new function for investigating ligand analogs and target proteins of small-molecule drugs. PMID:25404129
dbSNO 2.0: a resource for exploring structural environment, functional and disease association and regulatory network of protein S-nitrosylation. PMID:25399423
Helminth.net: expansions to Nematode.net and an introduction to Trematode.net. PMID:25392426
Rfam 12.0: updates to the RNA families database. PMID:25392425
Whole-genome sequencing of the world's oldest people. PMID:25390934
Proteomics for systems toxicology. PMID:25379146
Europe PMC: a full-text literature database for the life sciences and platform for innovation. PMID:25378340
Genome-wide patterns of polymorphism in an inbred line of the African malaria mosquito Anopheles gambiae. PMID:25377942
De-novo assembly of mango fruit peel transcriptome reveals mechanisms of mango response to hot water treatment. PMID:25373421
Human cancer databases (review). PMID:25369839
Transcriptome profiling of the UV-B stress response in the desert shrub Lycium ruthenicum. PMID:25366177
PomBase 2015: updates to the fission yeast database. PMID:25361970
The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease. PMID:25355511
AraNet v2: an improved database of co-functional gene networks for the study of Arabidopsis thaliana and 27 other nonmodel plant species. PMID:25355510
The Mouse Genome Database (MGD): facilitating mouse as a model for human biology and disease. PMID:25348401
HAMAP in 2015: updates to the protein family classification and annotation system. PMID:25348399
The human DEPhOsphorylation database DEPOD: a 2015 update. PMID:25332398
Neuregulin-1β induces mature ventricular cardiac differentiation from induced pluripotent stem cells contributing to cardiac tissue repair. PMID:25329043
ImmuCo: a database of gene co-expression in immune cells. PMID:25326331
EpilepsyGene: a genetic resource for genes and mutations related to epilepsy. PMID:25324312
MoonProt: a database for proteins that are known to moonlight. PMID:25324305
The complex portal--an encyclopaedia of macromolecular complexes. PMID:25313161
Human germline and pan-cancer variomes and their distinct functional profiles. PMID:25232094
VirusMentha: a new resource for virus-host protein interactions. PMID:25217587
Proteome-wide subcellular topologies of E. coli polypeptides database (STEPdb). PMID:25210196
Transcriptome profiling of biliary atresia from new born infants by deep sequencing. PMID:25192893
Entropy-driven partitioning of the hierarchical protein space. PMID:25161256
Overview of the gene ontology task at BioCreative IV. PMID:25157073
Composition and applications of focus libraries to phenotypic assays. PMID:25104937
Selective clearance of aberrant tau proteins and rescue of neurotoxicity by transcription factor EB. PMID:25069841
Nonlinear quantitative radiation sensitivity prediction model based on NCI-60 cancer cell lines. PMID:25032244
Identification and characterization of long intergenic non-coding RNAs related to mouse liver development. PMID:25012394
Biophysical constraints on the evolution of tissue structure and function. PMID:24882821
What's that gene (or protein)? Online resources for exploring functions of genes, transcripts, and proteins. PMID:24723265
Biblio-MetReS for user-friendly mining of genes and biological processes in scientific documents. PMID:24688854
Understanding how and why the Gene Ontology and its annotations evolve: the GO within UniProt. PMID:24641996
Genomics and bioinformatics resources for translational science in Rosaceae. PMID:24634697
NCG 4.0: the network of cancer genes in the era of massive mutational screenings of cancer genomes. PMID:24608173
Protein-protein interactions prediction based on iterative clique extension with gene ontology filtering. PMID:24578640
Canto: an online tool for community literature curation. PMID:24574118
Genome-wide SNP calling using next generation sequencing data in tomato. PMID:24552708
Minimum information about a biofilm experiment (MIABiE): standards for reporting experiments and data on sessile microbial communities living at interfaces. PMID:24478124
Mining gene expression data for pollutants (dioxin, toluene, formaldehyde) and low dose of gamma-irradiation. PMID:24475070
Systems toxicology: from basic research to risk assessment. PMID:24446777
DBM-DB: the diamondback moth genome database. PMID:24434032
Galaxy tools to study genome diversity. PMID:24377391
Draft Genome Sequences of Human Pathogenic Fungus Geomyces pannorum Sensu Lato and Bat White Nose Syndrome Pathogen Geomyces (Pseudogymnoascus) destructans. PMID:24356829
The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes. PMID:24319146
BacMet: antibacterial biocide and metal resistance genes database. PMID:24304895
topPTM: a new module of dbPTM for identifying functional post-translational modifications in transmembrane proteins. PMID:24302577
MycoCosm portal: gearing up for 1000 fungal genomes. PMID:24297253
The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse. PMID:24285300
The Structure-Function Linkage Database. PMID:24271399
The European Bioinformatics Institute's data resources 2014. PMID:24271396
CentrosomeDB: a new generation of the centrosomal proteins database for Human and Drosophila melanogaster. PMID:24270791
Saccharomyces genome database provides new regulation data. PMID:24265222
Modulation of epidermal transcription circuits in psoriasis: new links between inflammation and hyperproliferation. PMID:24260178
MultitaskProtDB: a database of multitasking proteins. PMID:24253302
Ten quick tips for using the gene ontology. PMID:24244145
P³DB 3.0: From plant phosphorylation sites to protein networks. PMID:24243849
Mouse phenome database. PMID:24243846
The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases. PMID:24234451
COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia. PMID:24214998
CottonGen: a genomics, genetics and breeding database for cotton research. PMID:24203703
GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology. PMID:24194592
FunCoup 3.0: database of genome-wide functional coupling networks. PMID:24185702
HRaP: database of occurrence of HomoRepeats and patterns in proteomes. PMID:24150944
Measuring the evolution of ontology complexity: the gene ontology case study. PMID:24146805
HoPaCI-DB: host-Pseudomonas and Coxiella interaction database. PMID:24137008
Selective anticancer agents suppress aging in Drosophila. PMID:24096697
3did: a catalog of domain-based interactions of known three-dimensional structure. PMID:24081580
Rebelling for a reason: protein structural "outliers". PMID:24073209
Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases. PMID:24038354
IDOMAL: the malaria ontology revisited. PMID:24034841
Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort. PMID:23981286
metabolicMine: an integrated genomics, genetics and proteomics data warehouse for common metabolic disease research. PMID:23935057
Bioinformatics for spermatogenesis: annotation of male reproduction based on proteomics. PMID:23852026
A guide to best practices for Gene Ontology (GO) manual annotation. PMID:23842463
FIDEA: a server for the functional interpretation of differential expression analysis. PMID:23754850
The banana genome hub. PMID:23707967
Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae. PMID:23617571
Models incorporating chromatin modification data identify functionally important p53 binding sites. PMID:23599002
Transcriptome analyses reveal protein and domain families that delineate stage-related development in the economically important parasitic nematodes, Ostertagia ostertagi and Cooperia oncophora. PMID:23432754
Orchidstra: an integrated orchid functional genomics database. PMID:23324169
PomBase: a comprehensive online resource for fission yeast PubMed citations: 184.

184 articles citing: PomBase: a comprehensive online resource for fission yeast

Facultative heterochromatin formation in rDNA is essential for cell survival during nutritional starvation. PMID:35348762
Prediction of serine phosphorylation sites mapping on Schizosaccharomyces Pombe by fusing three encoding schemes with the random forest classifier. PMID:35173235
Gene age shapes the transcriptional landscape of sexual morphogenesis in mushroom-forming fungi (Agaricomycetes). PMID:35156613
Fission yeast paxillin contains two Cdc15 binding motifs for robust recruitment to the cytokinetic ring. PMID:35108037
Isolated THATCH domain of End4 is unable to bind F-actin independently in the fission yeast Schizosaccharomyces pombe. PMID:35024575
On and Off: Epigenetic Regulation of C. albicans Morphological Switches. PMID:34832617
R-loops and regulatory changes in chronologically ageing fission yeast cells drive non-random patterns of genome rearrangements. PMID:34464389
Co-transcriptional RNA cleavage by Drosha homolog Pac1 triggers transcription termination in fission yeast. PMID:34352089
Exomer Is Part of a Hub Where Polarized Secretion and Ionic Stress Connect. PMID:34349749
Fission Yeast Schizosaccharomyces pombe: A Unicellular "Micromammal" Model Organism. PMID:34101381
The state of F-BAR domains as membrane-bound oligomeric platforms. PMID:33888395
The Descent of Databases. PMID:33789353
Analysis of the SNARE Stx8 recycling reveals that the retromer-sorting motif has undergone evolutionary divergence. PMID:33788833
Repression of a large number of genes requires interplay between homologous recombination and HIRA. PMID:33511417
Insights into the Roles of the Sideroflexins/SLC56 Family in Iron Homeostasis and Iron-Sulfur Biogenesis. PMID:33494450
Opposite Surfaces of the Cdc15 F-BAR Domain Create a Membrane Platform That Coordinates Cytoskeletal and Signaling Components for Cytokinesis. PMID:33357436
Time-varying mobility and turnover of actomyosin ring components during cytokinesis in Schizosaccharomyces pombe. PMID:33326250
Bioinformatical dissection of fission yeast DNA replication origins. PMID:32692956
RESTful API for iPTMnet: a resource for protein post-translational modification network discovery. PMID:32395768
A chromosome-scale assembly of the smallest Dothideomycete genome reveals a unique genome compaction mechanism in filamentous fungi. PMID:32326892
Pyruvate kinase variant of fission yeast tunes carbon metabolism, cell regulation, growth and stress resistance. PMID:32319721
Time-lapse single-cell transcriptomics reveals modulation of histone H3 for dormancy breaking in fission yeast. PMID:32152323
Reconstitution of the Schizosaccharomyces pombe RNA Exosome. PMID:31768990
Cellular models of Batten disease. PMID:31655107
Diverse DNA Sequence Motifs Activate Meiotic Recombination Hotspots Through a Common Chromatin Remodeling Pathway. PMID:31511300
Identification of 15 New Bypassable Essential Genes of Fission Yeast. PMID:31474649
An Evaluation of Machine Learning Approaches for the Prediction of Essential Genes in Eukaryotes Using Protein Sequence-Derived Features. PMID:31312416
YeasTSS: an integrative web database of yeast transcription start sites. PMID:31032841
The NuA4 acetyltransferase and histone H4 acetylation promote replication recovery after topoisomerase I-poisoning. PMID:30992049
Killer Meiotic Drive and Dynamic Evolution of the wtf Gene Family. PMID:30991417
Isolation of Fission Yeast Condensin Temperature-Sensitive Mutants with Single Amino Acid Substitutions Targeted to Hinge Domain. PMID:30914423
A Deep-sequencing-assisted, Spontaneous Suppressor Screen in the Fission Yeast Schizosaccharomyces pombe. PMID:30907886
XPG-related nucleases are hierarchically recruited for double-stranded rDNA break resection. PMID:30885940
A systematic genetic screen identifies essential factors involved in nuclear size control. PMID:30759079
Comparative Genomic Screen in Two Yeasts Reveals Conserved Pathways in the Response Network to Phenol Stress. PMID:30647105
Adding phosphorylation events to the core oscillator driving the cell cycle of fission yeast. PMID:30513113
A suppressor of a wtf poison-antidote meiotic driver acts via mimicry of the driver's antidote. PMID:30475921
Abrogation of glucosidase I-mediated glycoprotein deglucosylation results in a sick phenotype in fission yeasts: Model for the human MOGS-CDG disorder. PMID:30389790
Gene Essentiality Analyzed by In Vivo Transposon Mutagenesis and Machine Learning in a Stable Haploid Isolate of Candida albicans. PMID:30377286
Common mechanism of transcription termination at coding and noncoding RNA genes in fission yeast. PMID:30341288
PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information. PMID:30321395
S-Adenosylmethionine Synthetase Is Required for Cell Growth, Maintenance of G0 Phase, and Termination of Quiescence in Fission Yeast. PMID:30240645
Genetic regulation of mitotic competence in G0 quiescent cells. PMID:30116786
Uncovering Natural Longevity Alleles from Intercrossed Pools of Aging Fission Yeast Cells. PMID:30072377
Quantitative Phosphoproteomics Reveals the Signaling Dynamics of Cell-Cycle Kinases in the Fission Yeast Schizosaccharomyces pombe. PMID:29996109
Fission yeast telosomes: non-canonical histone-containing chromatin structures dependent on shelterin and RNA. PMID:29992245
Polymerase pausing induced by sequence-specific RNA-binding protein drives heterochromatin assembly. PMID:29967291
Long noncoding RNA repertoire and targeting by nuclear exosome, cytoplasmic exonuclease, and RNAi in fission yeast. PMID:29914874
Helicase-Dependent RNA Decay Illuminated by a Cryo-EM Structure of a Human Nuclear RNA Exosome-MTR4 Complex. PMID:29906447
RNAi-dependent heterochromatin assembly in fission yeast Schizosaccharomyces pombe requires heat-shock molecular chaperones Hsp90 and Mas5. PMID:29866182
A Heterochromatin Domain Forms Gradually at a New Telomere and Is Dynamic at Stable Telomeres. PMID:29784772
PomBase: The Scientific Resource for Fission Yeast. PMID:29761456
RNAi drives nonreciprocal translocations at eroding chromosome ends to establish telomere-free linear chromosomes. PMID:29654060
Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides. PMID:29521624
General amino acid control in fission yeast is regulated by a nonconserved transcription factor, with functions analogous to Gcn4/Atf4. PMID:29432178
Duplication and Transformation of the Schizosaccharomyces pombe Collection of Deletion Strains. PMID:29423859
Host factors that promote retrotransposon integration are similar in distantly related eukaryotes. PMID:29232693
RNA metabolism is the primary target of formamide in vivo. PMID:29162938
iPTMnet: an integrated resource for protein post-translational modification network discovery. PMID:29145615
Regulated Ire1-dependent mRNA decay requires no-go mRNA degradation to maintain endoplasmic reticulum homeostasis in S. pombe. PMID:28945192
Nanoscale architecture of the Schizosaccharomyces pombe contractile ring. PMID:28914606
Dsc E3 ligase localization to the Golgi requires the ATPase Cdc48 and cofactor Ufd1 for activation of sterol regulatory element-binding protein in fission yeast. PMID:28821619
A CRISPR/Cas9-based method and primer design tool for seamless genome editing in fission yeast. PMID:28612052
OrthoFiller: utilising data from multiple species to improve the completeness of genome annotations. PMID:28521726
MARRVEL: Integration of Human and Model Organism Genetic Resources to Facilitate Functional Annotation of the Human Genome. PMID:28502612
The anatomy of phenotype ontologies: principles, properties and applications. PMID:28387809
Tracking the evolution of 3D gene organization demonstrates its connection to phenotypic divergence. PMID:28369658
Fission Yeast Apc15 Stabilizes MCC-Cdc20-APC/C Complexes, Ensuring Efficient Cdc20 Ubiquitination and Checkpoint Arrest. PMID:28366744
Protein Bioinformatics Databases and Resources. PMID:28150231
Unsupervised detection of regulatory gene expression information in different genomic regions enables gene expression ranking. PMID:28143396
CDK Substrate Phosphorylation and Ordering the Cell Cycle. PMID:27984725
Identifying genes required for respiratory growth of fission yeast. PMID:27918601
The eukaryotic promoter database in its 30th year: focus on non-vertebrate organisms. PMID:27899657
Functional and regulatory profiling of energy metabolism in fission yeast. PMID:27887640
The dynamic landscape of fission yeast meiosis alternative-splice isoforms. PMID:27856494
A New Membrane Protein Sbg1 Links the Contractile Ring Apparatus and Septum Synthesis Machinery in Fission Yeast. PMID:27749909
Big data mining powers fungal research: recent advances in fission yeast systems biology approaches. PMID:27730285
CSL protein regulates transcription of genes required to prevent catastrophic mitosis in fission yeast. PMID:27687771
Pfh1 Is an Accessory Replicative Helicase that Interacts with the Replisome to Facilitate Fork Progression and Preserve Genome Integrity. PMID:27611590
Identification of nuclear genes affecting 2-Deoxyglucose resistance in Schizosaccharomyces pombe. PMID:27481777
Php4 Is a Key Player for Iron Economy in Meiotic and Sporulating Cells. PMID:27466270
The fission yeast CENP-B protein Abp1 prevents pervasive transcription of repetitive DNA elements. PMID:27345571
Identification of S-phase DNA damage-response targets in fission yeast reveals conservation of damage-response networks. PMID:27298342
A Brief History of Schizosaccharomyces pombe Research: A Perspective Over the Past 70 Years. PMID:27270696
Selection for reduced translation costs at the intronic 5' end in fungi. PMID:27260512
Discovery of genes involved in mitosis, cell division, cell wall integrity and chromosome segregation through construction of Schizosaccharomyces pombe deletion strains. PMID:27168121
Swi1Timeless Prevents Repeat Instability at Fission Yeast Telomeres. PMID:26990647
A Survey of the Gene Repertoire of Gigaspora rosea Unravels Conserved Features among Glomeromycota for Obligate Biotrophy. PMID:26973612
The Natural Product Resveratrol Inhibits Yeast Cell Separation by Extensively Modulating the Transcriptional Landscape and Reprogramming the Intracellular Metabolome. PMID:26950930
The repeatability of genome-wide mutation rate and spectrum estimates. PMID:26919990
Conserved and Diverged Functions of the Calcineurin-Activated Prz1 Transcription Factor in Fission Yeast. PMID:26896331
Determinants of RNA metabolism in the Schizosaccharomyces pombe genome. PMID:26883383
Prp4 Kinase Grants the License to Splice: Control of Weak Splice Sites during Spliceosome Activation. PMID:26730850
BioGRID: A Resource for Studying Biological Interactions in Yeast. PMID:26729913
Use of the BioGRID Database for Analysis of Yeast Protein and Genetic Interactions. PMID:26729909
AnGeLi: A Tool for the Analysis of Gene Lists from Fission Yeast. PMID:26635866
Involvement of small heat shock proteins, trehalose, and lipids in the thermal stress management in Schizosaccharomyces pombe. PMID:26631139
Genome-Wide Estimates of Mutation Rates and Spectrum in Schizosaccharomyces pombe Indicate CpG Sites are Highly Mutagenic Despite the Absence of DNA Methylation. PMID:26564949
Targeting of SUMO substrates to a Cdc48-Ufd1-Npl4 segregase and STUbL pathway in fission yeast. PMID:26537787
AnABlast: a new in silico strategy for the genome-wide search of novel genes and fossil regions. PMID:26494834
An Ancient Yeast for Young Geneticists: A Primer on the Schizosaccharomyces pombe Model System. PMID:26447128
A Degenerate Cohort of Yeast Membrane Trafficking DUBs Mediates Cell Polarity and Survival. PMID:26412298
Fission Yeast CSL Transcription Factors: Mapping Their Target Genes and Biological Roles. PMID:26366556
The Long Terminal Repeat Retrotransposons Tf1 and Tf2 of Schizosaccharomyces pombe. PMID:26350316
RNAseq analysis of Aspergillus fumigatus in blood reveals a just wait and see resting stage behavior. PMID:26311470
Role of Ccr4-Not complex in heterochromatin formation at meiotic genes and subtelomeres in fission yeast. PMID:26279681
Comparative biology of cell division in the fission yeast clade. PMID:26263485
Widespread alternative and aberrant splicing revealed by lariat sequencing. PMID:26261211
Nucleotide sequence composition adjacent to intronic splice sites improves splicing efficiency via its effect on pre-mRNA local folding in fungi. PMID:26246046
Condensin targets and reduces unwound DNA structures associated with transcription in mitotic chromosome condensation. PMID:26204128
PAND: A Distribution to Identify Functional Linkage from Networks with Preferential Attachment Property. PMID:26158709
Module-based construction of plasmids for chromosomal integration of the fission yeast Schizosaccharomyces pombe. PMID:26108218
Inferring orthologous gene regulatory networks using interspecies data fusion. PMID:26072515
Improving 3D Genome Reconstructions Using Orthologous and Functional Constraints. PMID:26000633
The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI. PMID:25855807
Biochemical functional predictions for protein structures of unknown or uncertain function. PMID:25848497
Calnexin is essential for survival under nitrogen starvation and stationary phase in Schizosaccharomyces pombe. PMID:25803873
Genome-wide analysis of core promoter structures in Schizosaccharomyces pombe with DeepCAGE. PMID:25747261
PRIMED: PRIMEr database for deleting and tagging all fission and budding yeast genes developed using the open-source genome retrieval script (GRS). PMID:25643023
Evaluation of de novo transcriptome assemblies from RNA-Seq data. PMID:25608678
Identification of new players in cell division, DNA damage response, and morphogenesis through construction of Schizosaccharomyces pombe deletion strains. PMID:25552606
Nonsense codon suppression in fission yeast due to mutations of tRNA(Ser.11) and translation release factor Sup35 (eRF3). PMID:25519804
Proteins involved in the degradation of cytoplasmic mRNA in the major eukaryotic model systems. PMID:25483043
The essential Schizosaccharomyces pombe Pfh1 DNA helicase promotes fork movement past G-quadruplex motifs to prevent DNA damage. PMID:25471935
Parallel profiling of fission yeast deletion mutants for proliferation and for lifespan during long-term quiescence. PMID:25452419
An ontology for microbial phenotypes. PMID:25433798
The Cdc15 and Imp2 SH3 domains cooperatively scaffold a network of proteins that redundantly ensure efficient cell division in fission yeast. PMID:25428987
The BioGRID interaction database: 2015 update. PMID:25428363
The Pathogen-Host Interactions database (PHI-base): additions and future developments. PMID:25414340
Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes. PMID:25378319
The kinetochore protein Kis1/Eic1/Mis19 ensures the integrity of mitotic spindles through maintenance of kinetochore factors Mis6/CENP-I and CENP-A. PMID:25375240
Systematic analysis of the role of RNA-binding proteins in the regulation of RNA stability. PMID:25375137
PomBase 2015: updates to the fission yeast database. PMID:25361970
Multifaceted genome control by Set1 Dependent and Independent of H3K4 methylation and the Set1C/COMPASS complex. PMID:25356590
Phylogenetic analysis of glycerol 3-phosphate acyltransferases in opisthokonts reveals unexpected ancestral complexity and novel modern biosynthetic components. PMID:25340523
Molecular dissection of the genetic mechanisms that underlie expression conservation in orthologous yeast ribosomal promoters. PMID:25294245
A systematic genetic screen identifies new factors influencing centromeric heterochromatin integrity in fission yeast. PMID:25274039
The RNA exosome promotes transcription termination of backtracked RNA polymerase II. PMID:25240800
Fission yeast Pxd1 promotes proper DNA repair by activating Rad16XPF and inhibiting Dna2. PMID:25203555
Optimization of the analogue-sensitive Cdc2/Cdk1 mutant by in vivo selection eliminates physiological limitations to its use in cell cycle analysis. PMID:24990387
The translational landscape of fission-yeast meiosis and sporulation. PMID:24929437
A method for increasing expressivity of Gene Ontology annotations using a compositional approach. PMID:24885854
MORPHIN: a web tool for human disease research by projecting model organism biology onto a human integrated gene network. PMID:24861622
A global non-coding RNA system modulates fission yeast protein levels in response to stress. PMID:24853205
Genome-wide screens for sensitivity to ionizing radiation identify the fission yeast nonhomologous end joining factor Xrc4. PMID:24847916
Conservation of PHO pathway in ascomycetes and the role of Pho84. PMID:24845516
Genetic and metabolomic dissection of the ergothioneine and selenoneine biosynthetic pathway in the fission yeast, S. pombe, and construction of an overproduction system. PMID:24828577
A genome-wide screen for sporulation-defective mutants in Schizosaccharomyces pombe. PMID:24727291
What's that gene (or protein)? Online resources for exploring functions of genes, transcripts, and proteins. PMID:24723265
H2A.Z-dependent regulation of cohesin dynamics on chromosome arms. PMID:24687850
Comparative genomics of Taphrina fungi causing varying degrees of tumorous deformity in plants. PMID:24682155
Canto: an online tool for community literature curation. PMID:24574118
GOLink: Finding Cooccurring Terms across Gene Ontology Namespaces. PMID:24524070
A genetic screen for functional partners of condensin in fission yeast. PMID:24362309
New insights into the RNA-based mechanism of action of the anticancer drug 5'-fluorouracil in eukaryotic cells. PMID:24223771
The Candida Genome Database: the new homology information page highlights protein similarity and phylogeny. PMID:24185697
Klf1, a C2H2 zinc finger-transcription factor, is required for cell wall maintenance during long-term quiescence in differentiated G0 phase. PMID:24167631
Ensembl Genomes 2013: scaling up access to genome-wide data. PMID:24163254
Toward knowledge support for analysis and interpretation of complex traits. PMID:24079802
Characterization and prediction of haploinsufficiency using systems-level gene properties in yeast. PMID:24048642
Cooperation between Rho-GEF Gef2 and its binding partner Nod1 in the regulation of fission yeast cytokinesis. PMID:23966468
Global analysis of fission yeast mating genes reveals new autophagy factors. PMID:23950735
Modification of tRNA(Lys) UUU by elongator is essential for efficient translation of stress mRNAs. PMID:23874237
An integrative, translational approach to understanding rare and orphan genetically based diseases. PMID:23853703
A guide to best practices for Gene Ontology (GO) manual annotation. PMID:23842463
Evolution of uni- and bifactorial sexual compatibility systems in fungi. PMID:23838688
A unique nucleosome arrangement, maintained actively by chromatin remodelers facilitates transcription of yeast tRNA genes. PMID:23767421
FSRD: fungal stress response database. PMID:23757396
A stress-activated, p38 mitogen-activated protein kinase-ATF/CREB pathway regulates posttranscriptional, sequence-dependent decay of target RNAs. PMID:23732911
A genome-wide resource of cell cycle and cell shape genes of fission yeast. PMID:23697806
Cross-species protein interactome mapping reveals species-specific wiring of stress response pathways. PMID:23695164
All or nothing: protein complexes flip essentiality between distantly related eukaryotes. PMID:23661563
FYPO: the fission yeast phenotype ontology. PMID:23658422
Genome sequencing of the plant pathogen Taphrina deformans, the causal agent of peach leaf curl. PMID:23631913
Functional characterization of Upf1 targets in Schizosaccharomyces pombe. PMID:23619768
Extensive mass spectrometry-based analysis of the fission yeast proteome: the Schizosaccharomyces pombe PeptideAtlas. PMID:23462206
A knockout screen for protein kinases required for the proper meiotic segregation of chromosomes in the fission yeast Schizosaccharomyces pombe. PMID:23370392
The BioGRID interaction database: 2013 update. PMID:23203989
Transposon integration enhances expression of stress response genes. PMID:23193295
Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells. PMID:23101633
Linkers of cell polarity and cell cycle regulation in the fission yeast protein interaction network. PMID:23093924
Hierarchical modularity and the evolution of genetic interactomes across species. PMID:22681890
DNA replication through hard-to-replicate sites, including both highly transcribed RNA Pol II and Pol III genes, requires the S. pombe Pfh1 helicase. PMID:22426534
GeneDB--an annotation database for pathogens. PMID:22116062
The Gene Ontology: enhancements for 2011 PubMed citations: 117.

117 articles citing: The Gene Ontology: enhancements for 2011

Transcriptome Remodeling in Gradual Development of Inverse Resistance between Paclitaxel and Cisplatin in Ovarian Cancer Cells. PMID:33287223
YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts. PMID:31586406
The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species. PMID:31214208
The Gene Ontology Resource: 20 years and still GOing strong. PMID:30395331
Identification of ceRNA network based on a RNA-seq shows prognostic lncRNA biomarkers in human lung adenocarcinoma. PMID:30344725
Predicting human protein function with multi-task deep neural networks. PMID:29889900
WEGO 2.0: a web tool for analyzing and plotting GO annotations, 2018 update. PMID:29788377
Cross-species multiple environmental stress responses: An integrated approach to identify candidate genes for multiple stress tolerance in sorghum (Sorghum bicolor (L.) Moench) and related model species. PMID:29590108
Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework. PMID:29385081
The ins and outs of eukaryotic viruses: Knowledge base and ontology of a viral infection. PMID:28207819
Datasets for the validation of the "in vivo" siRNA-silencing of CD40 and for the detection of new markers of atherosclerosis progression in ApoE-deficient mice. PMID:27924297
Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder. PMID:27479844
Pathway and network-based strategies to translate genetic discoveries into effective therapies. PMID:27340225
Dysfunctional miRNA-Mediated Regulation in Chromophobe Renal Cell Carcinoma. PMID:27258182
The genome of the miiuy croaker reveals well-developed innate immune and sensory systems. PMID:26902509
SOHSite: incorporating evolutionary information and physicochemical properties to identify protein S-sulfenylation sites. PMID:26819243
Identification of novel genes and pathways in carotid atheroma using integrated bioinformatic methods. PMID:26742467
Extensive Transcriptome Changes During Natural Onset and Release of Vegetative Bud Dormancy in Populus. PMID:26734012
A-DaGO-Fun: an adaptable Gene Ontology semantic similarity-based functional analysis tool. PMID:26476781
Global transcriptome and gene regulation network for secondary metabolite biosynthesis of tea plant (Camellia sinensis). PMID:26220550
Representing virus-host interactions and other multi-organism processes in the Gene Ontology. PMID:26215368
Genome Sequence of Acidovorax citrulli Group 1 Strain pslb65 Causing Bacterial Fruit Blotch of Melons. PMID:25908136
Genome Sequence of a Copper-Resistant Strain of Acidovorax citrulli Causing Bacterial Fruit Blotch of Melons. PMID:25908132
KaBOB: ontology-based semantic integration of biomedical databases. PMID:25903923
Exploring triacylglycerol biosynthetic pathway in developing seeds of Chia (Salvia hispanica L.): a transcriptomic approach. PMID:25875809
Genome Sequence of a Pseudomonas syringae pv. tabaci Strain, yuexi-1, Causing Wildfire Disease in Tobacco. PMID:25858831
Discovery of molecular markers to discriminate corneal endothelial cells in the human body. PMID:25807145
Ontology application and use at the ENCODE DCC. PMID:25776021
An ontology approach to comparative phenomics in plants. PMID:25774204
CSAX: Characterizing Systematic Anomalies in eXpression Data. PMID:25651392
Identification of retinopathy of prematurity related miRNAs in hyperoxia-induced neonatal rats by deep sequencing. PMID:25561234
A regulatory similarity measure using the location information of transcription factor binding sites in Saccharomyces cerevisiae. PMID:25560196
Metazoan remaining genes for essential amino acid biosynthesis: sequence conservation and evolutionary analyses. PMID:25545100
Gene Ontology Consortium: going forward. PMID:25428369
The draft genome of the large yellow croaker reveals well-developed innate immunity. PMID:25407894
The use of semantic similarity measures for optimally integrating heterogeneous Gene Ontology data from large scale annotation pipelines. PMID:25147557
Standardized description of scientific evidence using the Evidence Ontology (ECO). PMID:25052702
Transcriptional targets of the schizophrenia risk gene MIR137. PMID:24984191
BioCreative-IV virtual issue. PMID:24852177
Copy number variation in schizophrenia in Sweden. PMID:24776740
Identification of functional modules by integration of multiple data sources using a Bayesian network classifier. PMID:24736851
A rule-based ontological framework for the classification of molecules. PMID:24735706
RNA editome in rhesus macaque shaped by purifying selection. PMID:24722121
HybridGO-Loc: mining hybrid features on gene ontology for predicting subcellular localization of multi-location proteins. PMID:24647341
Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies. PMID:24595056
M-Finder: Uncovering functionally associated proteins from interactome data integrated with GO annotations. PMID:24565382
Identification of core T cell network based on immunome interactome. PMID:24528953
DFLAT: functional annotation for human development. PMID:24507166
Functional categorization of transcriptome in the species Symphysodon aequifasciatus Pellegrin 1904 (Perciformes: Cichlidae) exposed to benzo[a]pyrene and phenanthrene. PMID:24312524
NeXO Web: the NeXO ontology database and visualization platform. PMID:24271398
The European Bioinformatics Institute's data resources 2014. PMID:24271396
Representing annotation compositionality and provenance for the Semantic Web. PMID:24268021
De novo characterization of the Anthurium transcriptome and analysis of its digital gene expression under cold stress. PMID:24267953
ArchDB 2014: structural classification of loops in proteins. PMID:24265221
Ten quick tips for using the gene ontology. PMID:24244145
Ontology based molecular signatures for immune cell types via gene expression analysis. PMID:24004649
TCW: transcriptome computational workbench. PMID:23874959
Large-scale gene function analysis with the PANTHER classification system. PMID:23868073
Prioritizing Potentially Druggable Mutations with dGene: An Annotation Tool for Cancer Genome Sequencing Data. PMID:23826350
Biochemical Characterization of Hypothetical Proteins from Helicobacter pylori. PMID:23825549
GoSynthetic database tool to analyse natural and engineered molecular processes. PMID:23813641
Optimization criteria and biological process enrichment in homologous multiprotein modules. PMID:23757502
FIDEA: a server for the functional interpretation of differential expression analysis. PMID:23754850
FYPO: the fission yeast phenotype ontology. PMID:23658422
PhenoMiner: quantitative phenotype curation at the rat genome database. PMID:23603846
Genome-wide identification of bone metastasis-related microRNAs in lung adenocarcinoma by high-throughput sequencing. PMID:23593434
Systematic curation of protein and genetic interaction data for computable biology. PMID:23587305
Comparative GO: a web application for comparative gene ontology and gene ontology-based gene selection in bacteria. PMID:23536820
ORFcor: identifying and accommodating ORF prediction inconsistencies for phylogenetic analysis. PMID:23484025
A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation. PMID:23445355
Defining the extracellular matrix using proteomics. PMID:23419153
The YeastGenome app: the Saccharomyces Genome Database at your fingertips. PMID:23396302
Use of Gene Ontology Annotation to understand the peroxisome proteome in humans. PMID:23327938
RamiGO: an R/Bioconductor package providing an AmiGO visualize interface. PMID:23297033
The plant ontology as a tool for comparative plant anatomy and genomic analyses. PMID:23220694
The ortholog conjecture is untestable by the current gene ontology but is supported by RNA sequencing data. PMID:23209392
BSRD: a repository for bacterial small regulatory RNA. PMID:23203879
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures. PMID:23203873
COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals. PMID:23203868
NetwoRx: connecting drugs to networks and phenotypes in Saccharomyces cerevisiae. PMID:23203867
Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community. PMID:23202522
H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery. PMID:23197657
DbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications. PMID:23193290
PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees. PMID:23193289
GenColors-based comparative genome databases for small eukaryotic genomes. PMID:23193285
The Rice Genome Knowledgebase (RGKbase): an annotation database for rice comparative genomics and evolutionary biology. PMID:23193278
HAMAP in 2013, new developments in the protein family classification and annotation system. PMID:23193261
The RCSB Protein Data Bank: new resources for research and education. PMID:23193259
OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs. PMID:23180791
The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013. PMID:23180789
The mouse genome database: genotypes, phenotypes, and models of human disease. PMID:23175610
eProS--a database and toolbox for investigating protein sequence-structure-function relationships through energy profiles. PMID:23161695
SchistoDB: an updated genome resource for the three key schistosomes of humans. PMID:23161692
Gene Ontology annotations and resources. PMID:23161678
Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR. PMID:23160413
Opportunities for text mining in the FlyBase genetic literature curation workflow. PMID:23160412
Text-mining solutions for biomedical research: enabling integrative biology. PMID:23150036
Genome sequences of wild and domestic bactrian camels. PMID:23149746
MonarchBase: the monarch butterfly genome database. PMID:23143105
CellLineNavigator: a workbench for cancer cell line analysis. PMID:23118487
Linkers of cell polarity and cell cycle regulation in the fission yeast protein interaction network. PMID:23093924
BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions. PMID:23087378
Cross-Ontology multi-level association rule mining in the Gene Ontology. PMID:23071802
AbsIDconvert: an absolute approach for converting genetic identifiers at different granularities. PMID:22967011
Human more complex than mouse at cellular level. PMID:22911852
Identifying biologically interpretable transcription factor knockout targets by jointly analyzing the transcription factor knockout microarray and the ChIP-chip data. PMID:22898448
Endosomal crosstalk: meeting points for signaling pathways. PMID:22796207
Genetic architectures of psychiatric disorders: the emerging picture and its implications. PMID:22777127
Concept annotation in the CRAFT corpus. PMID:22776079
From classification to epilepsy ontology and informatics. PMID:22765502
ProteinHistorian: tools for the comparative analysis of eukaryote protein origin. PMID:22761559
Grand Challenges in Plant Systems Biology: Closing the Circle(s). PMID:22639645
Functional and topological characterization of transcriptional cooperativity in yeast. PMID:22574744
OREMPdb: a semantic dictionary of computational pathway models. PMID:22536973
Accelerating discovery for complex neurological and behavioral disorders through systems genetics and integrative genomics in the laboratory mouse. PMID:22422471
The 2012 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. PMID:22144685
The UniProt-GO Annotation database in 2011. PMID:22123736
PomBase 2015: updates to the fission yeast database PubMed citations: 54.

54 articles citing: PomBase 2015: updates to the fission yeast database

Invertebrate Model Organisms as a Platform to Investigate Rare Human Neurological Diseases. PMID:35256540
Prediction of serine phosphorylation sites mapping on Schizosaccharomyces Pombe by fusing three encoding schemes with the random forest classifier. PMID:35173235
R-loops and regulatory changes in chronologically ageing fission yeast cells drive non-random patterns of genome rearrangements. PMID:34464389
Databases for Protein-Protein Interactions. PMID:34236665
R2DT is a framework for predicting and visualising RNA secondary structure using templates. PMID:34108470
Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases. PMID:32652120
Proteomics Using Protease Alternatives to Trypsin Benefits from Sequential Digestion with Trypsin. PMID:32628831
Reconstitution of the Schizosaccharomyces pombe RNA Exosome. PMID:31768990
Killer Meiotic Drive and Dynamic Evolution of the wtf Gene Family. PMID:30991417
The EMBL-EBI search and sequence analysis tools APIs in 2019. PMID:30976793
AYbRAH: a curated ortholog database for yeasts and fungi spanning 600 million years of evolution. PMID:30893420
The Set1 complex is dimeric and acts with Jhd2 demethylation to convey symmetrical H3K4 trimethylation. PMID:30842216
Sequential Digestion with Trypsin and Elastase in Cross-Linking Mass Spectrometry. PMID:30817130
Heterochromatin suppresses gross chromosomal rearrangements at centromeres by repressing Tfs1/TFIIS-dependent transcription. PMID:30652128
The BioGRID interaction database: 2019 update. PMID:30476227
Abrogation of glucosidase I-mediated glycoprotein deglucosylation results in a sick phenotype in fission yeasts: Model for the human MOGS-CDG disorder. PMID:30389790
Common mechanism of transcription termination at coding and noncoding RNA genes in fission yeast. PMID:30341288
PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information. PMID:30321395
Genenames.org: the HGNC and VGNC resources in 2019. PMID:30304474
FungiDB: An Integrated Bioinformatic Resource for Fungi and Oomycetes. PMID:30152809
Uncovering Natural Longevity Alleles from Intercrossed Pools of Aging Fission Yeast Cells. PMID:30072377
Solid phase chemistry to covalently and reversibly capture thiolated RNA. PMID:29986098
Long noncoding RNA repertoire and targeting by nuclear exosome, cytoplasmic exonuclease, and RNAi in fission yeast. PMID:29914874
Implementation of the CRISPR-Cas13a system in fission yeast and its repurposing for precise RNA editing. PMID:29860393
Exportin Crm1 is repurposed as a docking protein to generate microtubule organizing centers at the nuclear pore. PMID:29809148
PomBase: The Scientific Resource for Fission Yeast. PMID:29761456
Control of mitotic chromosome condensation by the fission yeast transcription factor Zas1. PMID:29735745
Non-B-Form DNA Is Enriched at Centromeres. PMID:29365169
Host factors that promote retrotransposon integration are similar in distantly related eukaryotes. PMID:29232693
Molecular Interaction Search Tool (MIST): an integrated resource for mining gene and protein interaction data. PMID:29155944
Aspergillus Secondary Metabolite Database, a resource to understand the Secondary metabolome of Aspergillus genus. PMID:28779078
Gene2Function: An Integrated Online Resource for Gene Function Discovery. PMID:28663344
A large gene family in fission yeast encodes spore killers that subvert Mendel's law. PMID:28631610
A CRISPR/Cas9-based method and primer design tool for seamless genome editing in fission yeast. PMID:28612052
Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation. PMID:28365736
Tutorial on Protein Ontology Resources. PMID:28150233
The BioGRID interaction database: 2017 update. PMID:27980099
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities. PMID:27899649
RNAcentral: a comprehensive database of non-coding RNA sequences. PMID:27794554
Big data mining powers fungal research: recent advances in fission yeast systems biology approaches. PMID:27730285
RNALocate: a resource for RNA subcellular localizations. PMID:27543076
Model organism databases: essential resources that need the support of both funders and users. PMID:27334346
A Brief History of Schizosaccharomyces pombe Research: A Perspective Over the Past 70 Years. PMID:27270696
The Unicellular Ancestry of Groucho-Mediated Repression and the Origins of Metazoan Transcription Factors. PMID:27189982
Discovery of genes involved in mitosis, cell division, cell wall integrity and chromosome segregation through construction of Schizosaccharomyces pombe deletion strains. PMID:27168121
AnGeLi: A Tool for the Analysis of Gene Lists from Fission Yeast. PMID:26635866
Bulk Segregant Analysis Reveals the Genetic Basis of a Natural Trait Variation in Fission Yeast. PMID:26615217
Systematic identification and correction of annotation errors in the genetic interaction map of Saccharomyces cerevisiae. PMID:26602688
Ensembl Genomes 2016: more genomes, more complexity. PMID:26578574
Co-Expression Network Models Suggest that Stress Increases Tolerance to Mutations. PMID:26568486
AnABlast: a new in silico strategy for the genome-wide search of novel genes and fossil regions. PMID:26494834
An Ancient Yeast for Young Geneticists: A Primer on the Schizosaccharomyces pombe Model System. PMID:26447128
Application of comparative biology in GO functional annotation: the mouse model. PMID:26141960
Accurate identification of centromere locations in yeast genomes using Hi-C. PMID:25940625
A method for increasing expressivity of Gene Ontology annotations using a compositional approach PubMed citations: 47.

47 articles citing: A method for increasing expressivity of Gene Ontology annotations using a compositional approach

Genome Features and AntiSMASH Analysis of an Endophytic Strain Fusarium sp. R1. PMID:35736454
JaponicusDB: rapid deployment of a model organism database for an emerging model species. PMID:35380656
Student biocuration projects as a learning environment. PMID:35211294
Fission stories: using PomBase to understand Schizosaccharomyces pombe biology. PMID:35100366
Expression Profile and Potential Function of Circular RNAs in Peripheral Blood Mononuclear Cells in Male Patients With Primary Gout. PMID:34764979
Gene Ontology curation of the blood-brain barrier to improve the analysis of Alzheimer's and other neurological diseases. PMID:34697638
Circular RNAs in peripheral blood mononuclear cells from ankylosing spondylitis. PMID:34670246
LncRNAs Landscape in the patients of primary gout by microarray analysis. PMID:33600466
Anti-inflammatory activity of Radix Angelicae biseratae in the treatment of osteoarthritis determined by systematic pharmacology and in vitro experiments. PMID:33235614
The relationship between protein domains and homopeptides in the Plasmodium falciparum proteome. PMID:33062426
A Systematic Pharmacology and In Vitro Study to Identify the Role of the Active Compounds of Achyranthes bidentata in the Treatment of Osteoarthritis. PMID:32925869
Term Matrix: a novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns. PMID:32875947
Gene Ontology Curation of Neuroinflammation Biology Improves the Interpretation of Alzheimer's Disease Gene Expression Data. PMID:32417785
Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications. PMID:32353878
Comprehensive Analysis of the mRNA-lncRNA Co-expression Profile and ceRNA Networks Patterns in Chronic Hepatitis B. PMID:32030083
Formal axioms in biomedical ontologies improve analysis and interpretation of associated data. PMID:31821406
Phenotype annotation with the ontology of microbial phenotypes (OMP). PMID:31307550
Prediction of key gene function in spinal muscular atrophy using guilt by association method based on network and gene ontology. PMID:30906446
Improving the Gene Ontology Resource to Facilitate More Informative Analysis and Interpretation of Alzheimer's Disease Data. PMID:30501127
The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources. PMID:30407545
PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information. PMID:30321395
Monitoring changes in the Gene Ontology and their impact on genomic data analysis. PMID:30107399
Expanding the horizons of microRNA bioinformatics. PMID:29871895
Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes. PMID:29761466
PomBase: The Scientific Resource for Fission Yeast. PMID:29761456
Computation and application of tissue-specific gene set weights. PMID:29659714
Improving Interpretation of Cardiac Phenotypes and Enhancing Discovery With Expanded Knowledge in the Gene Ontology. PMID:29440116
CUILESS2016: a clinical corpus applying compositional normalization of text mentions. PMID:29316970
The Gene Ontology of eukaryotic cilia and flagella. PMID:29177046
Identification of pterygium-related mRNA expression profiling by microarray analysis. PMID:28664906
Microarray analysis of long noncoding RNA and mRNA expression profiles in human macrophages infected with Mycobacterium tuberculosis. PMID:27966580
PHI-base: a new interface and further additions for the multi-species pathogen-host interactions database. PMID:27915230
Expansion of the Gene Ontology knowledgebase and resources. PMID:27899567
Gene Ontology synonym generation rules lead to increased performance in biomedical concept recognition. PMID:27613112
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability. PMID:27377652
Model organism databases: essential resources that need the support of both funders and users. PMID:27334346
Gene regulation knowledge commons: community action takes care of DNA binding transcription factors. PMID:27270715
Gene Prioritization for Imaging Genetics Studies Using Gene Ontology and a Stratified False Discovery Rate Approach. PMID:27092072
Guidelines for the functional annotation of microRNAs using the Gene Ontology. PMID:26917558
Using the Gene Ontology to Annotate Key Players in Parkinson's Disease. PMID:26825309
Gene Expressing and sRNA Sequencing Show That Gene Differentiation Associates with a Yellow Acer palmatum Mutant Leaf in Different Light Conditions. PMID:26788511
Protein Analysis of Sapienic Acid-Treated Porphyromonas gingivalis Suggests Differential Regulation of Multiple Metabolic Pathways. PMID:26483519
TermGenie - a web-application for pattern-based ontology class generation. PMID:25937883
Adoption of clinical decision support in multimorbidity: a systematic review. PMID:25785897
Gene Ontology Consortium: going forward. PMID:25428369
The GOA database: gene Ontology annotation updates for 2015. PMID:25378336
PomBase 2015: updates to the fission yeast database. PMID:25361970