Tag: fungal genome


Found 35 sources
Source Match ReputationScore*

Saccharomyces Genome Database


The Saccharomyces Genome Database (SGD) collects and organizes information about the molecular biology and genetics of the yeast Saccharomyces cerevisiae. SGD contains a variety of biological information and tools with which to search and analyze it.
100%

MGnify


EBI Metagenomics has changed its name to MGnify to reflect a change in scope. This is a free-to-use resource aiming at supporting all metagenomics researchers. The service is an automated pipeline for the analysis and archiving of metagenomic data th ...
82%

PomBase


PomBase is a model organism database that provides organization of and access to scientific data for the fission yeast Schizosaccharomyces pombe. PomBase supports genomic sequence and features, genome-wide datasets and manual literature curation as w ...
81%

Yeast Searching for Transcriptional Regulators and Consensus Tracking


YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking) is a curated repository of more than 48333 regulatory associations between transcription factors (TF) and target genes in Saccharomyces cerevisiae, based on more than 1200 ...
75%

Aspergillus Genome Database


The Aspergillus Genome Database is a resource for genomic sequence data as well as gene and protein information for Aspergilli. This publicly available repository is a central point of access to genome, transcriptome and polymorphism data for the fun ...
72%

Magnaporthe grisea Database


The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. The project is a partnership between the International Rice Blast Genome Consortium, an ...
72%

Candida Genome Database


The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology term ...
71%

Phenomics of yeast Mutants


PhenoM (Phenomics of yeast Mutants) stores, retrieves, visualises and data mines the quantitative single-cell measurements extracted from micrographs of temperature-sensitive mutant cells. PhenoM allows users to rapidly search and retrieve raw images ...
70%

YEASTNET: A consensus reconstruction of yeast metabolism


This is a portal to the consensus yeast metabolic network as reconstructed from the genome sequence and literature. It is a highly annotated metabolic map of Saccharomyces cerevisiae S288c that is periodically updated by a team of collaborators from ...
67%

Fungal and Oomycete genomics resource


FungiDB is an integrated genomic and functional genomic database for the kingdom Fungi. The database integrates whole genome sequence and annotation and also includes experimental and environmental isolate sequence data. The database includes compara ...
65%

GermOnline


GermOnline is a cross-species database gateway focusing on high-throughput expression data relevant for germline development, the meiotic cell cycle and mitosis in healthy versus malignant cells. The portal provides access to the Saccharomyces Genomi ...
60%

Central Aspergillus Data REpository


This project aims to support the international Aspergillus research community by gathering all genomic information regarding this significant genus into one resource - The Central Aspergillus REsource (CADRE). CADRE facilitates visualisation and anal ...
59%

FGDB


Fusarium graminearum Genome Database (FGDB) is a comprehensive genome database on one of the most devastating fungal plant pathogens of wheat and barley. FGDB provides information on two gene sets independently derived by automated annotation of the ...
57%

Comparative Fungal Genomics Platform


The CFGP (Comparative Fungal Genomics Platform) was designed for comparative genomics projects with diverse fungal genomes.
56%

YPA


YPA (Yeast Promoter Atlas) is a repository of promoter features in Saccharomyces cerevisiae. It intergrates various resources (including promoter sequences, TSSs, TATA boxes, TFBSs, nucleosome occupancy, DNA bendability, TF-TF interaction, and gene e ...
54%

FusariumDB


Comparative genomics of Fusarium strains
51%

Yeast Resource Center Public Data Repository


The National Center for Research Resources' Yeast Resource Center is located at the University of Washington in Seattle, Washington. The mission of the center is to facilitate the identification and characterization of protein complexes in the yeast ...
47%

PROPHECY


Connecting genotype to phenotype is of fundamental importance in biomedical research and in our understanding of disease. Phenomics - large-scale analysis of gene function by quantitative analysis of phenotypes on a genome-wide scale - connects autom ...
44%

COGEME Phytopathogenic Fungi and Oomycete EST Database


The COGEME phytopathogen EST database currently contains expressed sequence tags (ESTs) from eleven species of phytopathogenic fungi and two oomycete species. In order to reduce sequence redundancy, sequence assembly software was used to join togethe ...
44%

Fungal Genome Size Database


Database of fungal genome size information has been launched in 2005: the Fungal Genome Size Database (http://www.zbi.ee/fungal-genomesize/). The database provides freely accessible genome size data assembled from literature. The taxonomy and the nam ...
41%

MycoCosm


Genomics resources of the DOE Joint Genome Institute
41%

yApoptosis


yeast apoptosis database
41%

AGD - Ashbya Genome Database


Ashbya gossypii genome database
41%

PathoYeastract


Transcription regulation in pathogenic yeasts
41%

LOQATE


Localization and Quantitation Atlas of the Yeast Proteome
41%

NetwoRx


Chemogenomic experiments in yeast: connection of drug response to biological pathways, phenotypes, and networks
41%

Yeast snoRNA Database


Yeast small nucleolar RNAs
41%

SCPD - Saccharomyces cerevisiae promoter database


A database of yeast promoters
41%

yMGV - Yeast microarray global viewer


Yeast expression data
41%

YDPM - Yeast Deletion Project


Yeast deletion project and mitochondria database
41%

CandidaDB


CandidaDB is a database dedicated to the genome of the most prevalent systemic fungal pathogen of humans, Candida albicans. CandidaDB Release 2.0 (June 2004) contains information pertaining to Assembly 19 of the genome of C. albicans strain SC5314. T ...
41%

Yeast Intron Database


This searchable database contains information about the location, structure, and function of spliceosomal introns in the nuclear genome of Saccharomyces cerevisiae. Searches produce reports for each intron satisfying the search criteria, showing key ...
41%

YGOB


The Yeast Gene Order Browser (YGOB) is an online tool designed to facilitate the comparative genomic visualization and appraisal of synteny within and between the genomes of seven hemiascomycete yeast species. Three of these genomes are polyploid, an ...
41%

OriDB - The DNA Replication Origin Database


OriDB provides a web-based catalogue of confirmed and predicted DNA replication origin sites. At present this is limited to budding yeast (S. cerevisiae). Each proposed or confirmed origin site appears as a record in OriDB, with each record comprisin ...
41%

SCMD - Saccharomyces cerevisiae Morphological Database


To study the global regulation of cell morphology, a number of groups have recently reported genome-wide screening data for yeast mutants with abnormal morphology. Despite the relatively simple ellipsoidal shape of yeast cells, in the past, cell morp ...
41%

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