Tag: pathogen

Found 33 sources
Source Match ReputationScore*


VectorBase is a web-accessible data repository for information about invertebrate vectors of human pathogens. VectorBase annotates and maintains vector genomes (as well as a number of non-vector genomes for comparative analysis) providing an integrat ...

Pathogen Host Interactions

PHI-Base contains expertly curated molecular and biological information on genes proven to affect the outcome of pathogen-host interactions. PHI-base catalogues experimentally verified pathogenicity, virulence and effector genes from fungal, Oomycete ...

Eukaryotic Pathogen, Vector and Host Informatics Resource

The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB) focuses on eukaryotic pathogens and invertebrate vectors of infectious diseases, , encompassing data from prior resources devoted to parasitic species (EuPathDB), fungi (FungiD ...

Minimum Information About a Proteomics Experiment

MIAPE attempts to define the minimum set of information about whole proteomics experiments that would be required by a public repository.

PathosSystems Resource Integration Center Repository

PATRIC is part of the Bacterial Bioinformatics Resource Center, and is an information system designed to support the biomedical research community’s work on bacterial infectious diseases via integration of vital pathogen information with rich data an ...

Virulence Factor Database

VFDB is an integrated and comprehensive database of virulence factors for bacterial pathogens (also including Chlamydia and Mycoplasma).


TriTrypDB is one of the databases that can be accessed through the VEuPathDB portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these ...


PlasmoDB is a genome database for the genus Plasmodium, a set of single-celled eukaryotic pathogens that cause human and animal diseases, including malaria.

Minimum Information about any (x) Sequence

The minimum information about any (x) sequence (MIxS) is an overarching framework of sequence metadata, that includes technology-specific checklists from the previous MIGS and MIMS standards, provides a way of introducing additional checklists such a ...

Candida Genome Database

The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology term ...


ToxoDB is a free online resource that provides access to genomic and functional genomic data for Toxoplasma and related organisms. The resource contains over 30 fully sequenced and annotated genomes, with genomic sequence from multiple strains availa ...


GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the "Pathogen Genomics" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed ...

Host Pathogen Interaction Database

HPIDB 3.0 is a resource that helps annotate, predict and display host-pathogen interactions (HPI). HPI that underpin infectious diseases are critical for developing novel intervention strategies. HPIDB is a host-pathogen protein-protein interaction ( ...

Plant Resistance Gene Database

PRGdb is an open and daily updated space about plant resistance genes, in which all information about this family is stored, curated and discussed. This resource encourages research community curation of plant resistance genes.


The SugarBind Database (SugarBindDB) was created in 2002 as part of an effort by the MITRE Corporation (http://www.mitre.org) to develop a pathogen-capture technology based on the binding of viral, bacterial and biotoxin lectins to specific glycans ( ...


MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Tricho ...

National Microbial Pathogen Data Resource

The NMPDR provided curated annotations in an environment for comparative analysis of genomes and biological subsystems, with an emphasis on the food-borne pathogens Campylobacter, Listeria, Staphylococcus, Streptococcus, and Vibrio; as well as the ST ...

Outbreak Reports and Intervention studies Of Nosocomial infection

In order to raise the standards of research and publication, a CONSORT equivalent for these largely quasi-experimental studies has been prepared by the authors of two relevant systematic reviews undertaken for the HTA and the Cochrane Collaboration. ...


PseudoBase is a collection of RNA pseudoknots that have been made available for retrieval to the scientific community.

Target Pathogen

The Target-Pathogen database is a bioinformatic approach to prioritize drug targets in pathogens. Available genomic data for pathogens has created new opportunities for drug discovery and development, including new species, resistant and multiresista ...

Ontology of Host-Pathogen Interactions

OHPI is a community-driven ontology of host-pathogen interactions (OHPI) and represents the virulence factors (VFs) and how the mutants of VFs in the Victors database become less virulence inside a host organism or host cells. It is also developed to ...


An ontology of infectious disease epidemiology and ecology (a.k.a. population biology).

Infection Disease Ontology Malaria

An application ontology for malaria extending the infectious disease ontology (IDO). With about half a billion cases, of which nearly one million fatal ones, malaria constitutes one of the major infectious diseases worldwide. A recently revived effor ...

BEI Resource Repository

BEI Resources provides reagents, tools and information for studying Category A, B, and C priority pathogens, emerging infectious disease agents, non-pathogenic microbes and other microbiological materials of relevance to the research community.

Pathogen-Host Interaction Data integration and Analysis System

PHIDIAS is a web-based database and analysis system that aims to manually curate, computationally analyze, and address different scientific issues in the areas of pathogen-host interactions (PHI, or called host-pathogen interactions or HPI). PHIDIAS ...


LiceBase is a database for sea lice genomics. LiceBase provides the genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, Blast functionality and access to related high-thoughput genomics data.

Brucellosis Ontology

The Brucellosis Ontology is an extension of the Infectious Disease Ontology. It is a biomedical ontology describing the zoonotic disease brucellosis that is caused by Brucella, a facultative intracellular bacterium. The ontology is intended as an aid ...

Silkworm Pathogen Database

Silkworm Pathogen Database (SilkPathDB) is a comprehensive resource for studying on pathogens of silkworm, including microsporidia, fungi, bacteria and virus. SilkPathDB provides access to not only genomic data including functional annotation of gene ...

Host Pathogen Interactions Ontology

Ontology for host pathogen interactions in farmed animals.

European and Mediterranean Plant Protection Organization Global Database

The European and Mediterranean Plant Protection Organization Global Database (EPPO) GD provides all pest-specific information that has been produced or collected by EPPO. Data includes plant and pest species (such as scientific names, synonyms, commo ...

BCCM/IHEM Fungi Collection: Human & Animal Health

BCCM/IHEM is a fungal culture collection specialized in medical and veterinary isolates. About 15.000 strains are available from all over the world: yeasts and filamentous fungi, pathogens, allergenic species, strains producing mycotoxins, reference ...

Genomic Epidemiology Ontology

The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research food-borne pathogens, infectious disease surveillance and outbreak investigations. This includes descriptions of the genomics, laboratory, clin ...

European and Mediterranean Plant Protection Organization Codes

European and Mediterranean Plant Protection Organization (EPPO) Codes are computer codes developed for plants, pests (including pathogens) which are important in agriculture and plant protection. EPPO codes constitute a harmonized coding system which ...

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