Carbohydrate Structure Database
Names
More detailed information about this field from each metasource.
Carbohydrate Structure Database
metasource: Fairsharing.org
version: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
CSDB
metasource: Fairsharing.org
version: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:02.130684
Carbohydrate Structure Database (CSDB)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
csdb
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:02.130684
Names
More detailed information about this field from each metasource.
Carbohydrate Structure Database
metasource: Fairsharing.orgversion: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
CSDB
metasource: Fairsharing.orgversion: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:02.130684
Carbohydrate Structure Database (CSDB)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
csdb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:02.130684
Other names: CSDB, Carbohydrate Structure Database (CSDB), csdb
Names
More detailed information about this field from each metasource.
Carbohydrate Structure Database
metasource: Fairsharing.orgversion: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
CSDB
metasource: Fairsharing.orgversion: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:02.130684
Carbohydrate Structure Database (CSDB)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
csdb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:02.130684
The Carbohydrate Structure Database (CSDB) contains manually curated natural carbohydrate structures, taxonomy, bibliography, NMR data and more. The Bacterial (BCSDB) and Plant&Fungal (PFCSDB) databases were merged in 2015, becoming the CSDB, to improve the quality of content-dependent services, such as taxon clustering and NMR simulation.
Description
More detailed information about this field from each metasource.
The Carbohydrate Structure Database (CSDB) contains manually curated natural carbohydrate structures, taxonomy, bibliography, NMR data and more. The Bacterial (BCSDB) and Plant&Fungal (PFCSDB) databases were merged in 2015, becoming the CSDB, to improve the quality of content-dependent services, such as taxon clustering and NMR simulation.
metasource: Fairsharing.orgversion: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Carbohydrate Structure Database (CSDB) stores published data on glycans and glycoconjugates of bacterial, archaean, plant and fungal origin. It provides data on structures, bibliography, taxonomy, 1H and 13C NMR spectrum assignment, methods used for structure elucidation, cross-references, and other information. As of 2015, it contains ca. 17,100 glycan structures from ca. 7800 organisms publishedin ca. 6500 articles. The coverage on bacteria is closed to complete up to 2014, and the coverage on fungi is close to complete up to 2005.Most data come from manual curation based on retrospective literature analysis. A part of structures published before 1996 was importedfrom the CarbBank database, appended with missing data and verified manually against the original publications with error correction.Main features of CSDB are: (1) regular updates aiming at high coverage, ca. 1000 new records are added annually; (2) high data quality achieved by automated and manual expert verification;(3) manually verified bibliographic, taxonomic, and NMR spectroscopic annotations;(4) automated data exchange with numerous other databases using dedicated formats and Resource Description Framework;(5) free access on the InternetCSDB is supplied with additional tools for empirical or database-driven 13C and 1H NMR spectrum simulation (including 2D NMR), NMR-based structure ranking, statistics on coverage and distribution of structural fragments among taxa, and clustering of taxa based on similarities in their glycomes.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
This is CSDB version 1 merged from Bacterial (BCSDB) and Plant&Fungal (PFCSDB) databases. This database aims at provision of structural, bibliographic, taxonomic, NMR spectroscopic and other information on glycan and glycoconjugate structures of prokaryotic, plant and fungal origin. It has been merged from the Bacterial and Plant&Fungal Carbohydrate Structure Databases (BCSDB+PFCSDB). The key points of this service are: High coverage. The coverage for bacteria (up to 2016) and archaea (up to 2016) is above 80%. Similar coverage for plants and fungi is expected in the future. The database is close to complete up to 1998 for plants, and up to 2006 for fungi. Data quality. High data quality is achieved by manual curation using original publications which is assisted by multiple automatic procedures for error control. Errors present in publications are reported and corrected, when possible. Data from other databases are verified on import. Detailed annotations. Structural data are supplied with extended bibliography, assigned NMR spectra, taxon identification including strains and serogroups, and other information if available in the original publication. Services. CSDB serves as a platform for a number of computational services tuned for glycobiology, such as NMR simulation, automated structure elucidation, taxon clustering, 3D molecular modeling, statistical processing of data etc. Integration. CSDB is cross-linked to other glycoinformatics projects and NCBI databases. The data are exportable in various formats, including most widespread encoding schemes and records using GlycoRDF ontology. Free web access. Users can access the database for free via its web interface (see Help). The main source of data is retrospective literature analysis. About 20% of data were imported from CCSD (Carbbank, University of Georgia, Athens; structures published before 1996) with subsequent manual curation and approval. The current coverage is displayed in red on the top of the left menu. The time lag between the publication of new data and their deposition into CSDB is ca. 1 year. In the scope of bacterial carbohydrates, CSDB covers nearly all structures of this origin published up to 2016. Prokaryotic, plant and fungal means that a glycan was found in the organism(s) belonging to these taxonomic domains or was obtained by modification of those found in them. Carbohydrate means a structure composed of any residues linked by glycosidic, ester, amidic, ketal, phospho- or sulpho-diester bonds in which at least one residue is a sugar or its derivative.
metasource: re3data.orgversion: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
The Carbohydrate Structure Database is a free curated repository storing various data on glycans of bacterial, fungal and plant origins.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:02.130684
Webpage:
http://csdb.glycoscience.ru/bacterialWebpage
More detailed information about this field from each metasource.
http://csdb.glycoscience.ru/bacterial
metasource: Fairsharing.orgversion: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://csdb.glycoscience.ru/database
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
http://csdb.glycoscience.ru/database/
metasource: re3data.orgversion: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
http://csdb.glycoscience.ru/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:02.130684
Licence:
Name: Public DomainLicence name
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Public Domain
metasource: re3data.orgversion: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
Not licensed
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:02.130684
Licence URL
More detailed information about this field from each metasource.
http://csdb.glycoscience.ru/database/index.html
metasource: re3data.orgversion: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
Publications:
(6)
Publications
More detailed information about this field from each metasource.
Statistical analysis of the Bacterial Carbohydrate Structure Data Base (BCSDB): characteristics and diversity of bacterial carbohydrates in comparison with mammalian glycans
PMID: 18694500
metasource: Fairsharing.org
version: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Carbohydrate structure database merged from bacterial, archaeal, plant and fungal parts
PMID: 26286194
metasource: Fairsharing.org
version: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Bacterial carbohydrate structure database 3: principles and realization
PMID: 21155523
metasource: Fairsharing.org
version: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de
PMID: 17202164
metasource: Fairsharing.org
version: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1093/nar/gkv840
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Source files of the Carbohydrate Structure Database: the way to sophisticated analysis of natural glycans
PMID: 35354826
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:02.130684
Publications
More detailed information about this field from each metasource.
Statistical analysis of the Bacterial Carbohydrate Structure Data Base (BCSDB): characteristics and diversity of bacterial carbohydrates in comparison with mammalian glycans
PMID: 18694500
metasource: Fairsharing.org
version: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Carbohydrate structure database merged from bacterial, archaeal, plant and fungal parts
PMID: 26286194
metasource: Fairsharing.org
version: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Bacterial carbohydrate structure database 3: principles and realization
PMID: 21155523
metasource: Fairsharing.org
version: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de
PMID: 17202164
metasource: Fairsharing.org
version: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1093/nar/gkv840
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Source files of the Carbohydrate Structure Database: the way to sophisticated analysis of natural glycans
PMID: 35354826
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:02.130684
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Statistical analysis of the Bacterial Carbohydrate Structure Data Base (BCSDB): characteristics and diversity of bacterial carbohydrates in comparison with mammalian glycans
PubMed citations: 47.
47 articles citing: Statistical analysis of the Bacterial Carbohydrate Structure Data Base (BCSDB): characteristics and diversity of bacterial carbohydrates in comparison with mammalian glycans
Source files of the Carbohydrate Structure Database: the way to sophisticated analysis of natural glycans. PMID:35354826
Reduced Virulence and Enhanced Host Adaption during Antibiotics Therapy: a Story of a Within-Host Carbapenem-Resistant Klebsiella pneumoniae Sequence Type 11 Evolution in a Patient with a Serious Scrotal Abscess. PMID:35196132
Structure of the Cell-Wall-Associated Polysaccharides from the Deep-Sea Marine Bacterium Devosia submarina KMM 9415T. PMID:34940664
Combined effects of glycan chain length and linkage type on the immunogenicity of glycoconjugate vaccines. PMID:34893630
Streamlined access to carbohydrate building blocks: Methyl 2,4,6-tri-O-benzyl-α-d-glucopyranoside. PMID:34856429
Biosynthetic Glycan Labeling. PMID:34606245
A general approach to explore prokaryotic protein glycosylation reveals the unique surface layer modulation of an anammox bacterium. PMID:34341504
Metabolic inhibitors of bacterial glycan biosynthesis. PMID:34123271
Metabolic Glycan Labeling-Based Screen to Identify Bacterial Glycosylation Genes. PMID:33186014
The glycan alphabet is not universal: a hypothesis. PMID:33048043
Reactivity-Stereoselectivity Mapping for the Assembly of Mycobacterium marinum Lipooligosaccharides. PMID:32856761
Emergence and significance of carbohydrate-specific antibodies. PMID:32753697
Stereoselective Protection-Free Modification of 3-Keto-saccharides. PMID:32635733
Conformational Studies of Oligosaccharides. PMID:32329095
Microarray Strategies for Exploring Bacterial Surface Glycans and Their Interactions With Glycan-Binding Proteins. PMID:32010066
Stereoelectronic Effects Impact Glycan Recognition. PMID:31930911
Synthetic carbohydrate-based vaccines: challenges and opportunities. PMID:31900143
TLR4, but Neither Dectin-1 nor Dectin-2, Participates in the Mollusk Hemocyanin-Induced Proinflammatory Effects in Antigen-Presenting Cells From Mammals. PMID:31214162
Bacterial carbohydrate diversity - a Brave New World. PMID:31176085
Bacterial Cell Wall Modification with a Glycolipid Substrate. PMID:31081628
Structural features underlying recognition and translocation of extracellular polysaccharides. PMID:30842868
Microbe-focused glycan array screening platform. PMID:30670663
SugarSketcher: Quick and Intuitive Online Glycan Drawing. PMID:30563078
Bacterial Glycoengineering as a Biosynthetic Route to Customized Glycomolecules. PMID:30099598
Glycosyl nitrates in synthesis: streamlined access to glucopyranose building blocks differentiated at C-2. PMID:29693690
The Myriad Properties of Pasteurella multocida Lipopolysaccharide. PMID:28825691
Detection of bacterial-reactive natural IgM antibodies in desert bighorn sheep populations. PMID:28662203
Recognition of microbial glycans by soluble human lectins. PMID:28482337
Heptose Sounds the Alarm: Innate Sensing of a Bacterial Sugar Stimulates Immunity. PMID:27658039
Dectin-2 Recognizes Mannosylated O-antigens of Human Opportunistic Pathogens and Augments Lipopolysaccharide Activation of Myeloid Cells. PMID:27358401
Carbohydrate Structure Database: tools for statistical analysis of bacterial, plant and fungal glycomes. PMID:26337239
Metabolic profiling as a tool for prioritizing antimicrobial compounds. PMID:26335567
Recognition of microbial glycans by human intelectin-1. PMID:26148048
Qrator: a web-based curation tool for glycan structures. PMID:25165068
Toolboxes for a standardised and systematic study of glycans. PMID:24564482
Glycogenomics as a mass spectrometry-guided genome-mining method for microbial glycosylated molecules. PMID:24191063
Human tandem-repeat-type galectins bind bacterial non-βGal polysaccharides. PMID:24065176
Neisseria gonorrhoeae-derived heptose elicits an innate immune response and drives HIV-1 expression. PMID:23733950
Glycan fragment database: a database of PDB-based glycan 3D structures. PMID:23104379
Sweet entanglements--protein:glycan interactions in two HIV-inactivating lectin families. PMID:23023834
The use of glycoinformatics in glycochemistry. PMID:23015842
1D 13C-NMR data as molecular descriptors in spectra--structure relationship analysis of oligosaccharides. PMID:22456542
A processive carbohydrate polymerase that mediates bifunctional catalysis using a single active site. PMID:22217153
Evolution of plant nucleotide-sugar interconversion enzymes. PMID:22125650
GlycomeDB--a unified database for carbohydrate structures. PMID:21045056
A systematic approach to protein glycosylation analysis: a path through the maze. PMID:20852609
Bioinformatics and molecular modeling in glycobiology. PMID:20364395 -
Carbohydrate structure database merged from bacterial, archaeal, plant and fungal parts
PubMed citations: 40.
40 articles citing: Carbohydrate structure database merged from bacterial, archaeal, plant and fungal parts
The biosynthetic origin of ribofuranose in bacterial polysaccharides. PMID:35393575
Evaluation of antibiofilm potential of four-domain α-amylase from Streptomyces griseus against exopolysaccharides (EPS) of bacterial pathogens using Danio rerio. PMID:35381886
Source files of the Carbohydrate Structure Database: the way to sophisticated analysis of natural glycans. PMID:35354826
Structure of the Cell-Wall-Associated Polysaccharides from the Deep-Sea Marine Bacterium Devosia submarina KMM 9415T. PMID:34940664
Diel investments in metabolite production and consumption in a model microbial system. PMID:34921302
RDFizing the biosynthetic pathway of E.coli O-antigen to enable semantic sharing of microbiology data. PMID:34809564
The Role of Fucose-Containing Glycan Motifs Across Taxonomic Kingdoms. PMID:34631801
Glycoinformatics Tools for Comprehensive Characterization of Glycans Enzymatically Released from Proteins. PMID:34611862
Structure of the 4-O-[1-Carboxyethyl]-d-Mannose-Containing O-Specific Polysaccharide of a Halophilic Bacterium Salinivibrio sp. EG9S8QL. PMID:34564170
Putting the pieces together: mapping the O-glycoproteome. PMID:34358979
Expanding the Occurrence of Polysaccharides to the Viral World: The Case of Mimivirus. PMID:34241943
Production and сharacterization of the exopolysaccharide from strain Paenibacillus polymyxa 2020. PMID:34228741
Probiotic Bacteria with High Alpha-Gal Content Protect Zebrafish against Mycobacteriosis. PMID:34208966
Current Trend of Marine Carbohydrate-Containing Compounds with Medicinal Properties. PMID:34200998
Structural Studies of the Lipopolysaccharide of Aeromonas veronii bv. sobria Strain K133 Which Represents New Provisional Serogroup PGO1 Prevailing among Mesophilic Aeromonads on Polish Fish Farms. PMID:33924078
The glycoconjugate ontology (GlycoCoO) for standardizing the annotation of glycoconjugate data and its application. PMID:33677548
Strategies and Tactics for the Development of Selective Glycan-Binding Proteins. PMID:33497192
Exploring the Impact of Ketodeoxynonulosonic Acid in Host-Pathogen Interactions Using Uptake and Surface Display by Nontypeable Haemophilus influenzae. PMID:33468699
Glycan-to-Glycan Binding: Molecular Recognition through Polyvalent Interactions Mediates Specific Cell Adhesion. PMID:33451117
The 4R's Framework of Nutritional Strategies for Post-Exercise Recovery: A Review with Emphasis on New Generation of Carbohydrates. PMID:33375691
Big-Data Glycomics: Tools to Connect Glycan Biosynthesis to Extracellular Communication. PMID:33349503
Structure of the O-Antigen and the Lipid A from the Lipopolysaccharide of Fusobacterium nucleatum ATCC 51191. PMID:33197108
Computational tools for drawing, building and displaying carbohydrates: a visual guide. PMID:33082879
Three-Dimensional Structures of Carbohydrates and Where to Find Them. PMID:33081008
Comparison of Methods for Bulk Automated Simulation of Glycosidic Bond Conformations. PMID:33076365
Structure of the Polysaccharide Secreted by Vibrio alginolyticus CNCM I-5035 (Epidermist 4.0TM). PMID:33050246
Databases and Bioinformatic Tools for Glycobiology and Glycoproteomics. PMID:32937895
Lipopolysaccharide O-antigens-bacterial glycans made to measure. PMID:32424042
A bifunctional O-antigen polymerase structure reveals a new glycosyltransferase family. PMID:32152541
ProCarbDB: a database of carbohydrate-binding proteins. PMID:31598690
Pyruvate Substitutions on Glycoconjugates. PMID:31590345
Composition of the Biofilm Matrix of Cutibacterium acnes Acneic Strain RT5. PMID:31293526
Updates to the Symbol Nomenclature for Glycans guidelines. PMID:31184695
Bacterial carbohydrate diversity - a Brave New World. PMID:31176085
SugarSketcher: Quick and Intuitive Online Glycan Drawing. PMID:30563078
Glycomics@ExPASy: Bridging the Gap. PMID:30097532
Meeting Report of the International Life Science Integration Workshop 2018. PMID:29982395
GlyTouCan: an accessible glycan structure repository. PMID:28922742
The 2016 database issue of Nucleic Acids Research and an updated molecular biology database collection. PMID:26740669
Property Graph vs RDF Triple Store: A Comparison on Glycan Substructure Search. PMID:26656740 -
Bacterial carbohydrate structure database 3: principles and realization
PubMed citations: 18.
18 articles citing: Bacterial carbohydrate structure database 3: principles and realization
Structure of the O-Antigen and the Lipid A from the Lipopolysaccharide of Fusobacterium nucleatum ATCC 51191. PMID:33197108
Three-Dimensional Structures of Carbohydrates and Where to Find Them. PMID:33081008
Tailor-made exopolysaccharides-CRISPR-Cas9 mediated genome editing in Paenibacillus polymyxa. PMID:32995508
Structure and in vitro Bioactivity against Cancer Cells of the Capsular Polysaccharide from the Marine Bacterium Psychrobacter marincola. PMID:32438723
FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation. PMID:27296299
Bacterial β-Kdo glycosyltransferases represent a new glycosyltransferase family (GT99). PMID:27199480
SugarBindDB, a resource of glycan-mediated host-pathogen interactions. PMID:26578555
GlyTouCan 1.0--The international glycan structure repository. PMID:26476458
Carbohydrate structure database merged from bacterial, archaeal, plant and fungal parts. PMID:26286194
Databases for Microbiologists. PMID:26013493
GlycoRDF: an ontology to standardize glycomics data in RDF. PMID:25388145
Qrator: a web-based curation tool for glycan structures. PMID:25165068
Toolboxes for a standardised and systematic study of glycans. PMID:24564482
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. PMID:24495517
Introducing glycomics data into the Semantic Web. PMID:24280648
The Third ACGG-DB Meeting Report: Towards an international collaborative infrastructure for glycobioinformatics. PMID:23271684
The use of glycoinformatics in glycochemistry. PMID:23015842
ProGlycProt: a repository of experimentally characterized prokaryotic glycoproteins. PMID:22039152 -
Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de
PubMed citations: 13.
13 articles citing: Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de
Insights into Bioinformatic Applications for Glycosylation: Instigating an Awakening towards Applying Glycoinformatic Resources for Cancer Diagnosis and Therapy. PMID:33302373
GlyTouCan: an accessible glycan structure repository. PMID:28922742
Carbohydrate structure database merged from bacterial, archaeal, plant and fungal parts. PMID:26286194
Methods to identify the unexplored diversity of microbial exopolysaccharides. PMID:26106372
GlycoRDF: an ontology to standardize glycomics data in RDF. PMID:25388145
PTM-SD: a database of structurally resolved and annotated posttranslational modifications in proteins. PMID:24857970
Introducing glycomics data into the Semantic Web. PMID:24280648
Using databases and web resources for glycomics research. PMID:23325765
The use of glycoinformatics in glycochemistry. PMID:23015842
Functional network of glycan-related molecules: glyco-net in glycoconjugate data bank. PMID:20584338
Bioinformatics and molecular modeling in glycobiology. PMID:20364395
Cell surface of Lactococcus lactis is covered by a protective polysaccharide pellicle. PMID:20106971
GlycomeDB - integration of open-access carbohydrate structure databases. PMID:18803830 - http://dx.doi.org/10.1093/nar/gkv840
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Source files of the Carbohydrate Structure Database: the way to sophisticated analysis of natural glycans
PubMed citations: 0.
0 articles citing: Source files of the Carbohydrate Structure Database: the way to sophisticated analysis of natural glycans
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More detailed information about this field from each metasource.
carbohydrate
metasource: Fairsharing.org
version: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
cross linking
metasource: Fairsharing.org
version: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
curated information
metasource: Fairsharing.org
version: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
molecular structure
metasource: Fairsharing.org
version: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
nuclear magnetic resonance (nmr) spectroscopy
metasource: Fairsharing.org
version: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
structure
metasource: Fairsharing.org
version: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
structure databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
carbohydrates
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:02.130684
fungi
metasource: re3data.org
version: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
glycobiology
metasource: re3data.org
version: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
glycoinformatics
metasource: re3data.org
version: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
glycomics
metasource: re3data.org
version: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
plants
metasource: re3data.org
version: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
prokaryotes
metasource: re3data.org
version: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
protein interactions
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:02.130684
plant biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:02.130684
nmr
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:02.130684
Tags
More detailed information about this field from each metasource.
carbohydrate
metasource: Fairsharing.orgversion: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
cross linking
metasource: Fairsharing.orgversion: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
curated information
metasource: Fairsharing.orgversion: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
molecular structure
metasource: Fairsharing.orgversion: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
nuclear magnetic resonance (nmr) spectroscopy
metasource: Fairsharing.orgversion: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
structure
metasource: Fairsharing.orgversion: FAIRsharing.org: CSDB; Carbohydrate Structure Database; DOI: https://doi.org/10.25504/FAIRsharing.dkbt9j; Last edited: Feb. 5, 2019, 12:05 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
structure databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
carbohydrates
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:02.130684
fungi
metasource: re3data.orgversion: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
glycobiology
metasource: re3data.orgversion: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
glycoinformatics
metasource: re3data.orgversion: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
glycomics
metasource: re3data.orgversion: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
plants
metasource: re3data.orgversion: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
prokaryotes
metasource: re3data.orgversion: re3data.org: Carbohydrate Structure Database; editing status 2020-02-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3QZ33 last accessed: 2022-11-04
protein interactions
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:02.130684
plant biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:02.130684
nmr
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:02.130684
carbohydrate cross linking molecular structure nuclear magnetic resonance (nmr) spectroscopy structure structure carbohydrates fungi glycobiology glycoinformatics glycomics plants prokaryotes protein interaction plant biology nmr
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