MetaboLights
Names
More detailed information about this field from each metasource.
MetaboLights
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:12.196036
MTBLS
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metabolights
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:12.196036
Names
More detailed information about this field from each metasource.
MetaboLights
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:12.196036
MTBLS
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metabolights
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:12.196036
Other names: MTBLS, metabolights
Names
More detailed information about this field from each metasource.
MetaboLights
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:12.196036
MTBLS
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metabolights
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:12.196036
MetaboLights is a database for metabolomics studies, their raw experimental data and associated metadata. The database is cross-species and cross-technique and it covers metabolite structures and their reference spectra as well as their biological roles and locations. MetaboLights is the recommended metabolomics repository for a number of leading journals and ELIXIR, the European infrastructure for life science information.
Description
More detailed information about this field from each metasource.
MetaboLights is a database for metabolomics studies, their raw experimental data and associated metadata. The database is cross-species and cross-technique and it covers metabolite structures and their reference spectra as well as their biological roles and locations. MetaboLights is the recommended metabolomics repository for a number of leading journals and ELIXIR, the European infrastructure for life science information.
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
A database for metabolomics experiments and the associated metadata
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments.
metasource: re3data.orgversion: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
Database for Metabolomics experiments and derived information.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:12.196036
Webpage:
https://www.ebi.ac.uk/metabolights/Webpage
More detailed information about this field from each metasource.
https://www.ebi.ac.uk/metabolights/
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
http://www.ebi.ac.uk/metabolights
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
http://www.ebi.ac.uk/metabolights/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:12.196036
Licence:
Name: EMBL-EBI Terms of UseLicence name
More detailed information about this field from each metasource.
EMBL-EBI Terms of Use
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
other
metasource: re3data.orgversion: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
http://www.ebi.ac.uk/about/terms-of-use
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
https://www.ebi.ac.uk/about/terms-of-use
metasource: re3data.orgversion: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
Publications:
(8)
Publications
More detailed information about this field from each metasource.
MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data
PMID: 23109552
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
MetaboLights: a resource evolving in response to the needs of its scientific community
PMID: 31691833
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
MetaboLights: An Open-Access Database Repository for Metabolomics Data
PMID: 27010336
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Automated assembly of species metabolomes through data submission into a public repository
PMID: 28830114
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1093/database/bat029
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1007/s11306-012-0462-0
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1186/2047-217X-2-8
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1093/nar/gks1004
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:12.196036
Publications
More detailed information about this field from each metasource.
MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data
PMID: 23109552
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
MetaboLights: a resource evolving in response to the needs of its scientific community
PMID: 31691833
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
MetaboLights: An Open-Access Database Repository for Metabolomics Data
PMID: 27010336
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Automated assembly of species metabolomes through data submission into a public repository
PMID: 28830114
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1093/database/bat029
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1007/s11306-012-0462-0
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1186/2047-217X-2-8
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1093/nar/gks1004
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:12.196036
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MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data
PubMed citations: 262.
262 articles citing: MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data
Adipocyte lysoplasmalogenase TMEM86A regulates plasmalogen homeostasis and protein kinase A-dependent energy metabolism. PMID:35835749
Metabolomic Profiling of Plasma Reveals Differential Disease Severity Markers in COVID-19 Patients. PMID:35572676
Advances in mass spectrometry-based metabolomics for investigation of metabolites. PMID:35539746
Exploring synergies between plant metabolic modelling and machine learning. PMID:35521559
Transcriptome and metabolome analyses revealed that narrowband 280 and 310 nm UV-B induce distinctive responses in Arabidopsis. PMID:35279697
Cloud-based archived metabolomics data: A resource for in-source fragmentation/annotation, meta-analysis and systems biology. PMID:35190800
Knowledge-Driven Approaches to Create the MTox700+ Metabolite Panel for Predicting Toxicity. PMID:35094093
ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis. PMID:34862403
Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management. PMID:34822415
Toward Integrated Multi-Omics Intervention: Rice Trait Improvement and Stress Management. PMID:34721467
Metabolic drift in the aging nervous system is reflected in human cerebrospinal fluid. PMID:34552125
Cytosolic phosphofructokinases are important for sugar homeostasis in leaves of Arabidopsis thaliana. PMID:34549262
Data Management and Modeling in Plant Biology. PMID:34539712
"Fuel for the Damage Induced": Untargeted Metabolomics in Elite Rugby Union Match Play. PMID:34436485
Four Weeks of Probiotic Supplementation Alters the Metabolic Perturbations Induced by Marathon Running: Insight from Metabolomics. PMID:34436476
Metabolomics for personalized medicine: the input of analytical chemistry from biomarker discovery to point-of-care tests. PMID:34432105
Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices. PMID:34239102
Exploration of Blood Lipoprotein and Lipid Fraction Profiles in Healthy Subjects through Integrated Univariate, Multivariate, and Network Analysis Reveals Association of Lipase Activity and Cholesterol Esterification with Sex and Age. PMID:34070169
UPLC-TOF-MS/MS-Based Metabolomics Analysis Reveals Species-Specific Metabolite Compositions in Pitchers of Nepenthes ampullaria, Nepenthes rafflesiana, and Their Hybrid Nepenthes × hookeriana. PMID:33968110
Data Processing Optimization in Untargeted Metabolomics of Urine Using Voigt Lineshape Model Non-Linear Regression Analysis. PMID:33947160
Repository scale classification and decomposition of tandem mass spectral data. PMID:33859284
The History of Gene Hunting in Hereditary Spinocerebellar Degeneration: Lessons From the Past and Future Perspectives. PMID:33833777
On-demand virtual research environments using microservices. PMID:33816885
Blind normalization of public high-throughput databases. PMID:33816884
Untargeted In Silico Compound Classification-A Novel Metabolomics Method to Assess the Chemodiversity in Bryophytes. PMID:33806786
Highly Species-Specific Foliar Metabolomes of Diverse Woody Species and Relationships with the Leaf Economics Spectrum. PMID:33805842
isa4j: a scalable Java library for creating ISA-Tab metadata. PMID:33728038
Dynamic Allocation of Carbon Storage and Nutrient-Dependent Exudation in a Revised Genome-Scale Model of Prochlorococcus. PMID:33633777
Metabolomics-based analysis of miniature flask contents identifies tobacco mixture use among the ancient Maya. PMID:33452410
Review on natural products databases: where to find data in 2020. PMID:33431011
HastaLaVista, a web-based user interface for NMR-based untargeted metabolic profiling analysis in biomedical sciences: towards a new publication standard. PMID:33430999
Metabolomic Signature of Human Aortic Valve Stenosis. PMID:33426374
State of the Field in Multi-Omics Research: From Computational Needs to Data Mining and Sharing. PMID:33362867
MSIWarp: A General Approach to Mass Alignment in Mass Spectrometry Imaging. PMID:33317272
Lipidomic Analysis of Plasma from Healthy Men and Women Shows Phospholipid Class and Molecular Species Differences between Sexes. PMID:33284478
Title NMR-based metabolic profiling provides diagnostic and prognostic information in critically ill children with suspected infection. PMID:33214628
Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data. PMID:33169034
Metabolite signatures of diverse Camellia sinensis tea populations. PMID:33149146
Automated supervised learning pipeline for non-targeted GC-MS data analysis. PMID:33117972
Predicting human health from biofluid-based metabolomics using machine learning. PMID:33077825
Exploring the metabolic phenotypes associated with different host inflammation of acute respiratory distress syndrome (ARDS) from lung metabolomics in mice. PMID:33049802
Circulating Metabolites as Potential Biomarkers for Neurological Disorders-Metabolites in Neurological Disorders. PMID:33003305
Recommendations for standardizing nomenclature for dietary (poly)phenol catabolites. PMID:32936878
Salivary metabolite levels in perinatally HIV-infected youth with periodontal disease. PMID:32915320
An Ancient Residue Metabolomics-Based Method to Distinguish Use of Closely Related Plant Species in Ancient Pipes. PMID:32671097
The impact of persistent colonization by Vibrio fischeri on the metabolome of the host squid Euprymna scolopes. PMID:32616546
Lipidome analysis of milk composition in humans, monkeys, bovids, and pigs. PMID:32560628
Metabolomics as an Emerging Tool in the Search for Astrobiologically Relevant Biomarkers. PMID:32551936
Malodorous biogenic amines in Escherichia coli-caused urinary tract infections in women-a metabolomics approach. PMID:32546787
The GOLIATH Project: Towards an Internationally Harmonised Approach for Testing Metabolism Disrupting Compounds. PMID:32423144
Multi-omics systems toxicology study of mouse lung assessing the effects of aerosols from two heat-not-burn tobacco products and cigarette smoke. PMID:32419906
A Metabolomic Approach for Predicting Diurnal Changes in Cortisol. PMID:32414047
Reproducible molecular networking of untargeted mass spectrometry data using GNPS. PMID:32405051
Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era. PMID:32384671
Pathway-Activity Likelihood Analysis and Metabolite Annotation for Untargeted Metabolomics Using Probabilistic Modeling. PMID:32375258
The role of changing temperature in microbial metabolic processes during permafrost thaw. PMID:32353013
NMR-based metabolomic profile of hypercholesterolemic human sera: Relationship with in vitro gene expression? PMID:32298312
Use of Untargeted Liquid Chromatography-Mass Spectrometry Metabolome To Discriminate Italian Monovarietal Red Wines, Produced in Their Different Terroirs. PMID:32271564
Searching for Drug Synergy Against Cancer Through Polyamine Metabolism Impairment: Insight Into the Metabolic Effect of Indomethacin on Lung Cancer Cells. PMID:32256343
Metabolomic Signature of Early Vascular Aging (EVA) in Hypertension. PMID:32118038
GARS: Genetic Algorithm for the identification of a Robust Subset of features in high-dimensional datasets. PMID:32046651
Metabolic alterations in immune cells associate with progression to type 1 diabetes. PMID:32043185
A serum metabolomics study of patients with nAMD in response to anti-VEGF therapy. PMID:31992792
LC-MS untargeted approach showed that methyl jasmonate application on Vitis labrusca L. grapes increases phenolics at subtropical Brazilian regions. PMID:31974665
MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets. PMID:31956905
Corruption of the Pearson correlation coefficient by measurement error and its estimation, bias, and correction under different error models. PMID:31949233
Endoplasmic reticulum-derived bodies enable a single-cell chemical defense in Brassicaceae plants. PMID:31937912
Mass spectrometry searches using MASST. PMID:31894142
Genomic Survey, Transcriptome, and Metabolome Analysis of Apocynum venetum and Apocynum hendersonii to Reveal Major Flavonoid Biosynthesis Pathways. PMID:31817331
BIOPEP-UWM Database of Bioactive Peptides: Current Opportunities. PMID:31783634
A database of high-resolution MS/MS spectra for lichen metabolites. PMID:31780665
A novel bioinformatics approach to identify the consistently well-performing normalization strategy for current metabolomic studies. PMID:31776543
The intestinal regionalization of acute norovirus infection is regulated by the microbiota via bile acid-mediated priming of type III interferon. PMID:31768030
A comparative evaluation of the generalised predictive ability of eight machine learning algorithms across ten clinical metabolomics data sets for binary classification. PMID:31728648
Creating a Reliable Mass Spectral-Retention Time Library for All Ion Fragmentation-Based Metabolomics. PMID:31717785
Revealing the constituents of Egypt's oldest beer using infrared and mass spectrometry. PMID:31700104
MetaboLights: a resource evolving in response to the needs of its scientific community. PMID:31691833
Quantification of Urinary Phenyl-γ-Valerolactones and Related Valeric Acids in Human Urine on Consumption of Apples. PMID:31671768
Bacterial Pathogens Hijack the Innate Immune Response by Activation of the Reverse Transsulfuration Pathway. PMID:31662455
Troubleshooting in Large-Scale LC-ToF-MS Metabolomics Analysis: Solving Complex Issues in Big Cohorts. PMID:31652940
WebSpecmine: A Website for Metabolomics Data Analysis and Mining. PMID:31635085
Disruption of gut integrity and permeability contributes to enteritis in a fish-parasite model: a story told from serum metabolomics. PMID:31619276
Chemical Diversity and Classification of Secondary Metabolites in Nine Bryophyte Species. PMID:31614655
The metaRbolomics Toolbox in Bioconductor and beyond. PMID:31548506
Toward collaborative open data science in metabolomics using Jupyter Notebooks and cloud computing. PMID:31522294
Fatty acid transport protein 4 is required for incorporation of saturated ultralong-chain fatty acids into epidermal ceramides and monoacylglycerols. PMID:31519952
Rapid metabolic shifts occur during the transition between hunger and satiety in Drosophila melanogaster. PMID:31492856
p13CMFA: Parsimonious 13C metabolic flux analysis. PMID:31490922
WiPP: Workflow for Improved Peak Picking for Gas Chromatography-Mass Spectrometry (GC-MS) Data. PMID:31438611
Metabolic responses of rice source and sink organs during recovery from combined drought and heat stress in the field. PMID:31433831
A metabolic profile of all-cause mortality risk identified in an observational study of 44,168 individuals. PMID:31431621
Rapid identification of species, sex and maturity by mass spectrometric analysis of animal faeces. PMID:31412863
Untargeted Metabolomics Reveals Molecular Effects of Ketogenic Diet on Healthy and Tumor Xenograft Mouse Models. PMID:31398922
Fruit Salad in the Lab: Comparing Botanical Species to Help Deciphering Fruit Primary Metabolism. PMID:31354750
Metabolomics Analytics Workflow for Epidemiological Research: Perspectives from the Consortium of Metabolomics Studies (COMETS). PMID:31319517
Phenolics lie at the centre of functional versatility in the responses of two phytochemically diverse tropical trees to canopy thinning. PMID:31257446
Inferring Interaction Networks From Multi-Omics Data. PMID:31249591
Staring into the void: demystifying microbial metabolomics. PMID:31210257
Ontology-based metabolomics data integration with quality control. PMID:31179719
MENDA: a comprehensive curated resource of metabolic characterization in depression. PMID:31157825
The Consortium of Metabolomics Studies (COMETS): Metabolomics in 47 Prospective Cohort Studies. PMID:31155658
Nutritional Metabolomics in Cancer Epidemiology: Current Trends, Challenges, and Future Directions. PMID:31129888
Mass Spectrometry-Based Integration and Expansion of the Chemical Diversity Harbored Within a Marine Sponge. PMID:31093948
Persistent Alterations in Plasma Lipid Profiles Before Introduction of Gluten in the Diet Associated With Progression to Celiac Disease. PMID:31082858
Metabolic responses of rice cultivars with different tolerance to combined drought and heat stress under field conditions. PMID:31081890
Drying Enhances Signal Intensities for Global GC⁻MS Metabolomics. PMID:30959834
Collected mass spectrometry data on monoterpene indole alkaloids from natural product chemistry research. PMID:30944327
Infrastructures of systems biology that facilitate functional genomic study in rice. PMID:30874968
A large-scale metabolomics study to harness chemical diversity and explore biochemical mechanisms in ryegrass. PMID:30854479
Interoperable and scalable data analysis with microservices: applications in metabolomics. PMID:30851093
Assessing the Effectiveness of Direct Data Merging Strategy in Long-Term and Large-Scale Pharmacometabonomics. PMID:30842738
Differentiation of Ficus deltoidea varieties and chemical marker determination by UHPLC-TOFMS metabolomics for establishing quality control criteria of this popular Malaysian medicinal herb. PMID:30830457
RANCM: a new ranking scheme for assigning confidence levels to metabolite assignments in NMR-based metabolomics studies. PMID:30830432
Metabolomic characterization of hypertension and dyslipidemia. PMID:30830367
rDolphin: a GUI R package for proficient automatic profiling of 1D 1H-NMR spectra of study datasets. PMID:30830320
Time-resolved decoding of metabolic signatures of in vitro growth of the hemibiotrophic pathogen Colletotrichum sublineolum. PMID:30824820
FAIRness and Usability for Open-access Omics Data Systems. PMID:30815061
Identification of bioactive metabolites using activity metabolomics. PMID:30814649
Evaluation of Sample Preparation Methods for the Analysis of Reef-Building Corals Using ¹H-NMR-Based Metabolomics. PMID:30781808
Sphingolipid-dependent Dscam sorting regulates axon segregation. PMID:30778062
In plaque-mass spectrometry imaging of a bloom-forming alga during viral infection reveals a metabolic shift towards odd-chain fatty acid lipids. PMID:30718847
mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics. PMID:30688441
Comparative Analyses of Metabolomic Fingerprints and Cytotoxic Activities of Soft Corals from the Colombian Caribbean. PMID:30634471
A robust intracellular metabolite extraction protocol for human neutrophil metabolic profiling. PMID:30571714
PhenoMeNal: processing and analysis of metabolomics data in the cloud. PMID:30535405
Modeling Meets Metabolomics-The WormJam Consensus Model as Basis for Metabolic Studies in the Model Organism Caenorhabditis elegans. PMID:30488036
Common Metabolic Pathways Implicated in Resistance to Chemotherapy Point to a Key Mitochondrial Role in Breast Cancer. PMID:30373788
ArrayExpress update - from bulk to single-cell expression data. PMID:30357387
pJRES Binning Algorithm (JBA): a new method to facilitate the recovery of metabolic information from pJRES 1H NMR spectra. PMID:30351417
Seasonal variation of secondary metabolites in nine different bryophytes. PMID:30271570
Computational workflow to study the seasonal variation of secondary metabolites in nine different bryophytes. PMID:30152810
MS-based lipidomics of human blood plasma: a community-initiated position paper to develop accepted guidelines. PMID:30115755
Container-based bioinformatics with Pachyderm. PMID:30101309
Improving sample classification by harnessing the potential of 1H-NMR signal chemical shifts. PMID:30089873
Are microbiome studies ready for hypothesis-driven research? PMID:30059804
The value of universally available raw NMR data for transparency, reproducibility, and integrity in natural product research. PMID:30003207
A decade after the metabolomics standards initiative it's time for a revision. PMID:29989594
PROMIS, global analysis of PROtein-metabolite interactions using size separation in Arabidopsis thaliana. PMID:29853640
Software Tools and Approaches for Compound Identification of LC-MS/MS Data in Metabolomics. PMID:29748461
Current Challenges in Plant Eco-Metabolomics. PMID:29734799
MetExplore: collaborative edition and exploration of metabolic networks. PMID:29718355
Based on the Metabolomic Approach the Energy Metabolism Responses of Oriental River Prawn Macrobrachium nipponense Hepatopancreas to Acute Hypoxia and Reoxygenation. PMID:29686619
Cancer-cell-secreted exosomal miR-105 promotes tumour growth through the MYC-dependent metabolic reprogramming of stromal cells. PMID:29662176
Grazer-induced transcriptomic and metabolomic response of the chain-forming diatom Skeletonema marinoi. PMID:29599523
STRENDA DB: enabling the validation and sharing of enzyme kinetics data. PMID:29498804
When Transcriptomics and Metabolomics Work Hand in Hand: A Case Study Characterizing Plant CDF Transcription Factors. PMID:29495643
A lost opportunity for science: journals promote data sharing in metabolomics but do not enforce it. PMID:29479297
Metabolomic alterations in invasive ductal carcinoma of breast: A comprehensive metabolomic study using tissue and serum samples. PMID:29416801
Global Analyses of Selective Insulin Resistance in Hepatocytes Caused by Palmitate Lipotoxicity. PMID:29414761
Linking soil biology and chemistry in biological soil crust using isolate exometabolomics. PMID:29296020
Ash leaf metabolomes reveal differences between trees tolerant and susceptible to ash dieback disease. PMID:29257137
Assessing Public Metabolomics Metadata, Towards Improving Quality. PMID:29236679
Strategies for dereplication of natural compounds using high-resolution tandem mass spectrometry. PMID:29225718
Similar, but different: structurally related azelaic acid and hexanoic acid trigger differential metabolomic and transcriptomic responses in tobacco cells. PMID:29187153
SATORI: a system for ontology-guided visual exploration of biomedical data repositories. PMID:29186292
Identifying metabolites by integrating metabolome databases with mass spectrometry cheminformatics. PMID:29176591
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research. PMID:29136241
jMorp: Japanese Multi Omics Reference Panel. PMID:29069501
The BioStudies database-one stop shop for all data supporting a life sciences study. PMID:29069414
Deciphering lipid structures based on platform-independent decision rules. PMID:29058722
PKM2 methylation by CARM1 activates aerobic glycolysis to promote tumorigenesis. PMID:29058718
Compliance with minimum information guidelines in public metabolomics repositories. PMID:28949328
Navigating freely-available software tools for metabolomics analysis. PMID:28890673
Automated assembly of species metabolomes through data submission into a public repository. PMID:28830114
Metabolomics based markers predict type 2 diabetes in a 14-year follow-up study. PMID:28804275
Volatile Metabolites Emission by In Vivo Microalgae-An Overlooked Opportunity? PMID:28788107
Metabolomic Analysis of Alfalfa (Medicago sativa L.) Root-Symbiotic Rhizobia Responses under Alkali Stress. PMID:28744296
Synthetic and systems biology for microbial production of commodity chemicals. PMID:28725470
Seed Metabolome Analysis of a Transgenic Rice Line Expressing Cholera Toxin B-subunit. PMID:28701756
Metabolomics Identifies Metabolic Markers of Maturation in Human Pluripotent Stem Cell-Derived Cardiomyocytes. PMID:28656061
Unique identifiers for small molecules enable rigorous labeling of their atoms. PMID:28534867
NOREVA: normalization and evaluation of MS-based metabolomics data. PMID:28525573
From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics. PMID:28520864
A Web Service Framework for Interactive Analysis of Metabolomics Data. PMID:28514166
Longevity of major coenzymes allows minimal de novo synthesis in microorganisms. PMID:28504670
Development of a core Clostridium thermocellum kinetic metabolic model consistent with multiple genetic perturbations. PMID:28469704
Identification of small molecules using accurate mass MS/MS search. PMID:28436590
Evidence of a DHA Signature in the Lipidome and Metabolome of Human Hepatocytes. PMID:28208746
How close are we to complete annotation of metabolomes? PMID:28113135
Global open data management in metabolomics. PMID:28092796
MASTR-MS: a web-based collaborative laboratory information management system (LIMS) for metabolomics. PMID:28090199
Computational tools and workflows in metabolomics: An international survey highlights the opportunity for harmonisation through Galaxy. PMID:28090198
A complete workflow for high-resolution spectral-stitching nanoelectrospray direct-infusion mass-spectrometry-based metabolomics and lipidomics. PMID:28079878
Considerations when choosing a genetic model organism for metabolomics studies. PMID:28025166
Performance Evaluation and Online Realization of Data-driven Normalization Methods Used in LC/MS based Untargeted Metabolomics Analysis. PMID:27958387
Genome, transcriptome and proteome: the rise of omics data and their integration in biomedical sciences. PMID:27881428
A Conversation on Data Mining Strategies in LC-MS Untargeted Metabolomics: Pre-Processing and Pre-Treatment Steps. PMID:27827887
The Poly (ADP-Ribose) Polymerase Inhibitor Veliparib and Radiation Cause Significant Cell Line Dependent Metabolic Changes in Breast Cancer Cells. PMID:27811964
Updates in Rhea - an expert curated resource of biochemical reactions. PMID:27789701
Prediction, Detection, and Validation of Isotope Clusters in Mass Spectrometry Data. PMID:27775610
The metabolome 18 years on: a concept comes of age. PMID:27695392
Alterations in Serum Polyunsaturated Fatty Acids and Eicosanoids in Patients with Mild to Moderate Chronic Obstructive Pulmonary Disease (COPD). PMID:27657052
The Lipopolysaccharide-Induced Metabolome Signature in Arabidopsis thaliana Reveals Dynamic Reprogramming of Phytoalexin and Phytoanticipin Pathways. PMID:27656890
Systems Medicine as an Emerging Tool for Cardiovascular Genetics. PMID:27626034
Meta-analysis of clinical metabolic profiling studies in cancer: challenges and opportunities. PMID:27601137
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking. PMID:27504778
Editorial: Metabolome Informatics and Statistics: Current State and Emerging Trends. PMID:27486579
Coordinate Regulation of Metabolite Glycosylation and Stress Hormone Biosynthesis by TT8 in Arabidopsis. PMID:27432888
Metabolomics: an emerging but powerful tool for precision medicine. PMID:27148576
Advantages and Pitfalls of Mass Spectrometry Based Metabolome Profiling in Systems Biology. PMID:27128910
The Ontology for Biomedical Investigations. PMID:27128319
Emerging applications of metabolomics in drug discovery and precision medicine. PMID:26965202
Deciphering ocean carbon in a changing world. PMID:26951682
libChEBI: an API for accessing the ChEBI database. PMID:26933452
Galaxy-M: a Galaxy workflow for processing and analyzing direct infusion and liquid chromatography mass spectrometry-based metabolomics data. PMID:26913198
A Computational Solution to Automatically Map Metabolite Libraries in the Context of Genome Scale Metabolic Networks. PMID:26909353
The Time Is Right to Focus on Model Organism Metabolomes. PMID:26891337
Taking Bioinformatics to Systems Medicine. PMID:26677177
Data standards can boost metabolomics research, and if there is a will, there is a way. PMID:26612985
ATP-binding Cassette Subfamily C Member 5 (ABCC5) Functions as an Efflux Transporter of Glutamate Conjugates and Analogs. PMID:26515061
A Glimpse to Background and Characteristics of Major Molecular Biological Networks. PMID:26491677
COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access. PMID:26491418
Metabolic responses induced by DNA damage and poly (ADP-ribose) polymerase (PARP) inhibition in MCF-7 cells. PMID:26478723
ChEBI in 2016: Improved services and an expanding collection of metabolites. PMID:26467479
Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools. PMID:26467476
Joint Analysis of Dependent Features within Compound Spectra Can Improve Detection of Differential Features. PMID:26442246
Cheminformatics Research at the Unilever Centre for Molecular Science Informatics Cambridge. PMID:26435758
Systems analysis of host-parasite interactions. PMID:26306749
PhenoMeter: A Metabolome Database Search Tool Using Statistical Similarity Matching of Metabolic Phenotypes for High-Confidence Detection of Functional Links. PMID:26284240
SEEK: a systems biology data and model management platform. PMID:26160520
From Peer-Reviewed to Peer-Reproduced in Scholarly Publishing: The Complementary Roles of Data Models and Workflows in Bioinformatics. PMID:26154165
Standardizing the experimental conditions for using urine in NMR-based metabolomic studies with a particular focus on diagnostic studies: a review. PMID:26109927
Many InChIs and quite some feat. PMID:26081259
Metabolic differences in ripening of Solanum lycopersicum 'Ailsa Craig' and three monogenic mutants. PMID:25977786
Direct infusion mass spectrometry metabolomics dataset: a benchmark for data processing and quality control. PMID:25977770
The SwissLipids knowledgebase for lipid biology. PMID:25943471
The Da Vinci European BioBank: A Metabolomics-Driven Infrastructure. PMID:25913579
Metabolonote: a wiki-based database for managing hierarchical metadata of metabolome analyses. PMID:25905099
BiNChE: a web tool and library for chemical enrichment analysis based on the ChEBI ontology. PMID:25879798
The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI. PMID:25855807
Analytical methods in untargeted metabolomics: state of the art in 2015. PMID:25798438
A 'rule of 0.5' for the metabolite-likeness of approved pharmaceutical drugs. PMID:25750602
Molecular phenotyping of a UK population: defining the human serum metabolome. PMID:25598764
MetaDB a Data Processing Workflow in Untargeted MS-Based Metabolomics Experiments. PMID:25566535
A public repository for mass spectrometry imaging data. PMID:25542566
Metabolism of skin-absorbed resveratrol into its glucuronized form in mouse skin. PMID:25506824
Pathomx: an interactive workflow-based tool for the analysis of metabolomic data. PMID:25490956
linkedISA: semantic representation of ISA-Tab experimental metadata. PMID:25472428
CeCaFDB: a curated database for the documentation, visualization and comparative analysis of central carbon metabolic flux distributions explored by 13C-fluxomics. PMID:25392417
Updates in Rhea--a manually curated resource of biochemical reactions. PMID:25332395
Comparative proteome analysis reveals conserved and specific adaptation patterns of Staphylococcus aureus after internalization by different types of human non-professional phagocytic host cells. PMID:25136337
The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience. PMID:24980485
Recent applications of metabolomics toward cyanobacteria. PMID:24957891
Tools and databases of the KOMICS web portal for preprocessing, mining, and dissemination of metabolomics data. PMID:24949426
Impacts of the Callipyge mutation on ovine plasma metabolites and muscle fibre type. PMID:24937646
Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions. PMID:24778628
Data Mining Methods for Omics and Knowledge of Crude Medicinal Plants toward Big Data Biology. PMID:24688691
jmzTab: a java interface to the mzTab data standard. PMID:24659499
GigaDB: promoting data dissemination and reproducibility. PMID:24622612
The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again. PMID:24564732
ABCC6 prevents ectopic mineralization seen in pseudoxanthoma elasticum by inducing cellular nucleotide release. PMID:24277820
The European Bioinformatics Institute's data resources 2014. PMID:24271396
EBI metagenomics--a new resource for the analysis and archiving of metagenomic data. PMID:24165880
The role of reporting standards for metabolite annotation and identification in metabolomic studies. PMID:24131531
metabolicMine: an integrated genomics, genetics and proteomics data warehouse for common metabolic disease research. PMID:23935057
Metabolomics and systems pharmacology: why and how to model the human metabolic network for drug discovery. PMID:23892182
An analysis of a 'community-driven' reconstruction of the human metabolic network. PMID:23888127
Predicting network activity from high throughput metabolomics. PMID:23861661
Dissemination of metabolomics results: role of MetaboLights and COSMOS. PMID:23683662
Error Analysis and Propagation in Metabolomics Data Analysis. PMID:23667718
The MetaboLights repository: curation challenges in metabolomics. PMID:23630246
Recent progress in the development of metabolome databases for plant systems biology. PMID:23577015 -
MetaboLights: a resource evolving in response to the needs of its scientific community
PubMed citations: 179.
179 articles citing: MetaboLights: a resource evolving in response to the needs of its scientific community
Investigation of urine metabolome of BALB/c mouse infected with an avirulent strain of Toxoplasma gondii. PMID:35906695
MAVEN2: An Updated Open-Source Mass Spectrometry Exploration Platform. PMID:35893250
Metabolic Profiling of Rheumatoid Arthritis Neutrophils Reveals Altered Energy Metabolism That Is Not Affected by JAK Inhibition. PMID:35888774
A Current Encyclopedia of Bioinformatics Tools, Data Formats and Resources for Mass Spectrometry Lipidomics. PMID:35888710
MicroRNA-mediated regulation of lipid metabolism in virus-infected Emiliania huxleyi. PMID:35869388
MetHoS: a platform for large-scale processing, storage and analysis of metabolomics data. PMID:35804309
Enhancing untargeted metabolomics using metadata-based source annotation. PMID:35798960
Longitudinal Changes in Circulating Metabolites and Lipoproteins After Breast Cancer Treatment. PMID:35785197
Deep kernel learning improves molecular fingerprint prediction from tandem mass spectra. PMID:35758813
Untargeted LC-HRMS Based-Plasma Metabolomics Reveals 3-O-Methyldopa as a New Biomarker of Poor Prognosis in High-Risk Neuroblastoma. PMID:35756625
Rifampicin-Mediated Metabolic Changes in Mycobacterium tuberculosis. PMID:35736426
Implementation of an MS/MS Spectral Library for Monoterpene Indole Alkaloids. PMID:35732939
Switchgrass Metabolomics Reveals Striking Genotypic and Developmental Differences in Specialized Metabolic Phenotypes. PMID:35729681
Bioinspired Rhamnolipid Protects Wheat Against Zymoseptoria tritici Through Mainly Direct Antifungal Activity and Without Major Impact on Leaf Physiology. PMID:35720601
Metabolic profilings of rat INS-1 β-cells under changing levels of essential amino acids. PMID:35701423
Linking gastrointestinal microbiota and metabolome dynamics to clinical outcomes in paediatric haematopoietic stem cell transplantation. PMID:35689247
Coupling between high-resolution mass spectrometry and focalized data-analysis methods provides the identification of new putative glycosidic non-anthocyanic flavonoids in grape. PMID:35687180
Power of mzRAPP-Based Performance Assessments in MS1-Based Nontargeted Feature Detection. PMID:35671103
Integrated Transcriptomics and Nontargeted Metabolomics Analysis Reveal Key Metabolic Pathways in Ganoderma lucidum in Response to Ethylene. PMID:35628712
The LOTUS initiative for open knowledge management in natural products research. PMID:35616633
IDSL.IPA Characterizes the Organic Chemical Space in Untargeted LC/HRMS Data Sets. PMID:35579321
Multi-Omic Profiling of Multi-Biosamples Reveals the Role of Amino Acid and Nucleotide Metabolism in Endometrial Cancer. PMID:35574395
m6A methylation mediates LHPP acetylation as a tumour aerobic glycolysis suppressor to improve the prognosis of gastric cancer. PMID:35568711
Variation in Root Exudate Composition Influences Soil Microbiome Membership and Function. PMID:35536051
Data Mining, Quality and Management in the Life Sciences. PMID:35507257
EMT alterations in the solute carrier landscape uncover SLC22A10/A15 imposed vulnerabilities in pancreatic cancer. PMID:35479410
Characterization of Constituents with Potential Anti-Inflammatory Activity in Chinese Lonicera Species by UHPLC-HRMS Based Metabolite Profiling. PMID:35448474
DEIMoS: An Open-Source Tool for Processing High-Dimensional Mass Spectrometry Data. PMID:35430813
FAIR Genomes metadata schema promoting Next Generation Sequencing data reuse in Dutch healthcare and research. PMID:35418585
Pyruvate kinase, a metabolic sensor powering glycolysis, drives the metabolic control of DNA replication. PMID:35418203
Non-targeted metabolomics of cooked cowpea (Vigna unguiculata) and pigeon pea (Cajanus cajan) from Ghana using two distinct and complementary analytical platforms. PMID:35415674
Angiopoietin-like 4 governs diurnal lipoprotein lipase activity in brown adipose tissue. PMID:35413480
automRm: An R Package for Fully Automatic LC-QQQ-MS Data Preprocessing Powered by Machine Learning. PMID:35412809
Cross-Omics Analysis of Fenugreek Supplementation Reveals Beneficial Effects Are Caused by Gut Microbiome Changes Not Mammalian Host Physiology. PMID:35409014
Transcriptomic and Non-Targeted Metabolomic Analyses Reveal the Flavonoid Biosynthesis Pathway in Auricularia cornea. PMID:35408732
Estrogens and Progestins Cooperatively Shift Breast Cancer Cell Metabolism. PMID:35406548
1H NMR based urinary metabolites profiling dataset of canine mammary tumors. PMID:35361774
Computational analyses of mechanism of action (MoA): data, methods and integration. PMID:35360890
Association of prenatal acetaminophen use and acetaminophen metabolites with DNA methylation of newborns: analysis of two consecutive generations of the Isle of Wight birth cohort. PMID:35317219
Urinary metabolomics reveals the biological characteristics of early pregnancy in pigs. PMID:35313998
Gut microbiota and fermentation-derived branched chain hydroxy acids mediate health benefits of yogurt consumption in obese mice. PMID:35292630
Untargeted metabolomics analysis of esophageal squamous cell cancer progression. PMID:35287685
Multi-Omics Strategies for Investigating the Microbiome in Toxicology Research. PMID:35285497
Metabolite Dysregulation by Pranlukast in Mycobacterium tuberculosis. PMID:35268621
Pathway Analysis for Cancer Research and Precision Oncology Applications. PMID:35230687
Cell Membrane Remodeling Mediates Polymyxin B Resistance in Klebsiella pneumoniae: An Integrated Proteomics and Metabolomics Study. PMID:35222333
Systematic Evaluation of HILIC Stationary Phases for Global Metabolomics of Human Plasma. PMID:35208239
Automated Annotation of Untargeted All-Ion Fragmentation LC-MS Metabolomics Data with MetaboAnnotatoR. PMID:35180347
Reproducible untargeted metabolomics workflow for exhaustive MS2 data acquisition of MS1 features. PMID:35172886
Plasma lipidomics analysis reveals altered lipids signature in patients with osteonecrosis of the femoral head. PMID:35147763
Deep models of integrated multiscale molecular data decipher the endothelial cell response to ionizing radiation. PMID:35106469
Phosphoglycolate phosphatase homologs act as glycerol-3-phosphate phosphatase to control stress and healthspan in C. elegans. PMID:35017476
Increased circulating butyrate and ursodeoxycholate during probiotic intervention in humans with type 2 diabetes. PMID:34996347
LCMD: Lung Cancer Metabolome Database. PMID:34976312
Optimization of metabolomic data processing using NOREVA. PMID:34952956
LC-MS-Based Metabolomics Discriminates Premium from Standard Chilean cv. Cabernet Sauvignon Wines from Different Valleys. PMID:34940587
Untargeted metabolomics of COVID-19 patient serum reveals potential prognostic markers of both severity and outcome. PMID:34928464
Development of RIKEN Plant Metabolome MetaDatabase. PMID:34918130
Enhanced hepatic respiratory capacity and altered lipid metabolism support metabolic homeostasis during short-term hypoxic stress. PMID:34911556
Metabolic Reprogramming and Reconstruction: Integration of Experimental and Computational Studies to Set the Path Forward in ADPKD. PMID:34901057
GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser. PMID:34862502
In vitro interaction network of a synthetic gut bacterial community. PMID:34857933
In vitro co-metabolism of epigallocatechin-3-gallate (EGCG) by the mucin-degrading bacterium Akkermansia muciniphila. PMID:34855864
Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management. PMID:34822415
Multiple acyl-CoA dehydrogenase deficiency kills Mycobacterium tuberculosis in vitro and during infection. PMID:34782606
Multi-Omics Approach to Elucidate Cerebrospinal Fluid Changes in Dogs with Intervertebral Disc Herniation. PMID:34769107
Rhea, the reaction knowledgebase in 2022. PMID:34755880
DNA Data Bank of Japan (DDBJ) update report 2021. PMID:34751405
Metabolomics in Exercise and Sports: A Systematic Review. PMID:34716906
maplet: An extensible R toolbox for modular and reproducible metabolomics pipelines. PMID:34694386
Pharmacometabolomics by NMR in Oncology: A Systematic Review. PMID:34681239
Recommendations for good practice in MS-based lipidomics. PMID:34662536
High-confidence structural annotation of metabolites absent from spectral libraries. PMID:34650271
Finger sweat analysis enables short interval metabolic biomonitoring in humans. PMID:34645808
Differentiation of the High Night Temperature Response in Leaf Segments of Rice Cultivars with Contrasting Tolerance. PMID:34638787
Leaf herbivory counteracts nematode-triggered repression of jasmonate-related defenses in tomato roots. PMID:34618073
Advancements in capturing and mining mass spectrometry data are transforming natural products research. PMID:34612288
Bile acid metabolism dysregulation associates with cancer cachexia: roles of liver and gut microbiome. PMID:34585527
Metabolomic Characterization Reveals ILF2 and ILF3 Affected Metabolic Adaptions in Esophageal Squamous Cell Carcinoma. PMID:34568427
Metabolomic signature of amino acids in plasma of patients with non-segmental Vitiligo. PMID:34562159
Metabolic drift in the aging nervous system is reflected in human cerebrospinal fluid. PMID:34552125
Marine dissolved organic matter: a vast and unexplored molecular space. PMID:34536106
ISA API: An open platform for interoperable life science experimental metadata. PMID:34528664
Heat Stress Alters the Intestinal Microbiota and Metabolomic Profiles in Mice. PMID:34512584
Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis. PMID:34492007
Thermodynamic Genome-Scale Metabolic Modeling of Metallodrug Resistance in Colorectal Cancer. PMID:34439283
Investigating Global Lipidome Alterations with the Lipid Network Explorer. PMID:34436429
Metabolomics for personalized medicine: the input of analytical chemistry from biomarker discovery to point-of-care tests. PMID:34432105
Amanida: An R package for Meta-analysis of metabolomics non-integral data. PMID:34406360
A hierarchical approach to removal of unwanted variation for large-scale metabolomics data. PMID:34404777
Metabolomics profiling predicts outcome of tocilizumab in rheumatoid arthritis: an exploratory study. PMID:34402961
Metabolic profiling of maternal serum of women at high-risk of spontaneous preterm birth using NMR and MGWAS approach. PMID:34402867
Dissecting Metabolism of Leaf Nodules in Ardisia crenata and Psychotria punctata. PMID:34395523
Mapping the biosynthetic pathway of a hybrid polyketide-nonribosomal peptide in a metazoan. PMID:34389721
Two parallel pathways connect glutamine metabolism and mTORC1 activity to regulate glutamoptosis. PMID:34376668
Adaptive laboratory evolution of microbial co-cultures for improved metabolite secretion. PMID:34370382
Characterization of the Heat-Stable Proteome during Seed Germination in Arabidopsis with Special Focus on LEA Proteins. PMID:34360938
Progress towards an OECD reporting framework for transcriptomics and metabolomics in regulatory toxicology. PMID:34333066
DecoID improves identification rates in metabolomics through database-assisted MS/MS deconvolution. PMID:34239103
Redirected nuclear glutamate dehydrogenase supplies Tet3 with α-ketoglutarate in neurons. PMID:34215750
Guide to Semi-Quantitative Non-Targeted Screening Using LC/ESI/HRMS. PMID:34207787
FATTY ACID SYNTHESIS IS REQUIRED FOR BREAST CANCER BRAIN METASTASIS. PMID:34179825
Untargeted Metabolomics Reveals Species-Specific Metabolite Production and Shared Nutrient Consumption by Pseudomonas aeruginosa and Staphylococcus aureus. PMID:34156287
Physiological extremes of the human blood metabolome: A metabolomics analysis of highly glycolytic, oxidative, and anabolic athletes. PMID:34152092
A Metabolomic Landscape of Maize Plants Treated With a Microbial Biostimulant Under Well-Watered and Drought Conditions. PMID:34149776
Plasma and stool metabolomics to identify microbiota derived-biomarkers of metabolic dysfunction-associated fatty liver disease: effect of PNPLA3 genotype. PMID:34137937
Metabolic perturbations sensitize triple-negative breast cancers to apoptosis induced by BH3 mimetics. PMID:34103421
An acquired acyltransferase promotes Klebsiella pneumoniae ST258 respiratory infection. PMID:34077733
Metabolomics reveals synergy between Ag and g-C3N4 in Ag/g-C3N4 composite photocatalysts: a unique feature among Ag-doped biocidal materials. PMID:34061256
The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing. PMID:34048576
UPLC-MS-Based Serum Metabolomics Reveals Potential Biomarkers of Ang II-Induced Hypertension in Mice. PMID:34026879
MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights. PMID:34019663
A general non-self response as part of plant immunity. PMID:34007033
A streamlined workflow for conversion, peer review, and publication of genomics metadata as omics data papers. PMID:33983435
Human Stool Metabolome Differs upon 24 h Blood Pressure Levels and Blood Pressure Dipping Status: A Prospective Longitudinal Study. PMID:33946722
A GC-MS/Single-Cell Method to Evaluate Membrane Transporter Substrate Specificity and Signaling. PMID:33928121
Altered metabolic pathways in a transgenic mouse model suggest mechanistic role of amyloid precursor protein overexpression in Alzheimer's disease. PMID:33876332
Highly Species-Specific Foliar Metabolomes of Diverse Woody Species and Relationships with the Leaf Economics Spectrum. PMID:33805842
Benchmarking Non-Targeted Metabolomics Using Yeast-Derived Libraries. PMID:33802096
High-Precision Automated Workflow for Urinary Untargeted Metabolomic Epidemiology. PMID:33739820
Semi-automated NMR Pipeline for Environmental Exposures: New Insights on the Metabolomics of Smokers versus Non-smokers. PMID:33691028
Standardized nomenclature and open science in Human Genomics. PMID:33612096
A community resource for paired genomic and metabolomic data mining. PMID:33589842
Metabolomics analysis of the serum from children with urolithiasis using UPLC-MS. PMID:33580996
Urban living in healthy Tanzanians is associated with an inflammatory status driven by dietary and metabolic changes. PMID:33574617
Metabolic Versatility of Mycobacterium tuberculosis during Infection and Dormancy. PMID:33540752
Improving Exposure Assessment Using Non-Targeted and Suspect Screening: The ISO/IEC 17025: 2017 Quality Standard as a Guideline. PMID:33530331
NMRFinder: a novel method for 1D 1H-NMR metabolite annotation. PMID:33523311
Integrated Metabolomics and Lipidomics Analysis Reveal Remodeling of Lipid Metabolism and Amino Acid Metabolism in Glucagon Receptor-Deficient Zebrafish. PMID:33520988
Lack of Electron Acceptors Contributes to Redox Stress and Growth Arrest in Asparagine-Starved Sarcoma Cells. PMID:33499165
Cancers in Agreement? Exploring the Cross-Talk of Cancer Metabolomic and Transcriptomic Landscapes Using Publicly Available Data. PMID:33494351
Areas of Metabolomic Exploration for Helminth Infections. PMID:33492932
Comparison of Regular, Pure Shift, and Fast 2D NMR Experiments for Determination of the Geographical Origin of Walnuts. PMID:33429871
Clovamide, a Hydroxycinnamic Acid Amide, Is a Resistance Factor Against Phytophthora spp. in Theobroma cacao. PMID:33424909
Metabolomics Insights in Early Childhood Caries. PMID:33423574
Metabolic Dynamics of In Vitro CD8+ T Cell Activation. PMID:33379404
Functional Characterization of the Lin28/let-7 Circuit During Forelimb Regeneration in Ambystoma mexicanum and Its Influence on Metabolic Reprogramming. PMID:33330447
Molecular Basis Underlying Common Cutworm Resistance of the Primitive Soybean Landrace Peking. PMID:33304385
NQO1 protects obese mice through improvements in glucose and lipid metabolism. PMID:33298924
Determination and Comparison of Short-Chain Fatty Acids in Serum and Colon Content Samples: Alzheimer's Disease Rat as a Case Study. PMID:33291848
Halogenated tryptophan derivatives disrupt essential transamination mechanisms in bloodstream form Trypanosoma brucei. PMID:33275612
Metabolic Drug Response Phenotyping in Colorectal Cancer Organoids by LC-QTOF-MS. PMID:33271860
Recurrent Topics in Mass Spectrometry-Based Metabolomics and Lipidomics-Standardization, Coverage, and Throughput. PMID:33249827
The European Bioinformatics Institute: empowering cooperation in response to a global health crisis. PMID:33245775
Plasma Metabolomic Profiles Differentiate Patients With Dilated Cardiomyopathy and Ischemic Cardiomyopathy. PMID:33240942
The application of rapid evaporative ionization mass spectrometry in the analysis of Drosophila species-a potential new tool in entomology. PMID:33234068
Symbiotic Bacterium-Derived Organic Acids Protect Delia antiqua Larvae from Entomopathogenic Fungal Infection. PMID:33203688
1H-NMR-Based Analysis for Exploring Knee Synovial Fluid Metabolite Changes after Local Cryotherapy in Knee Arthritis Patients. PMID:33202890
The maturity in fetal pigs using a multi-fluid metabolomic approach. PMID:33199811
Exclusive enteral nutrition mediates gut microbial and metabolic changes that are associated with remission in children with Crohn's disease. PMID:33144591
MetaClean: a machine learning-based classifier for reduced false positive peak detection in untargeted LC-MS metabolomics data. PMID:33085002
A Python-Based Pipeline for Preprocessing LC-MS Data for Untargeted Metabolomics Workflows. PMID:33081373
NASA GeneLab: interfaces for the exploration of space omics data. PMID:33080015
StreptomeDB 3.0: an updated compendium of streptomycetes natural products. PMID:33051671
Targeting Methionine Synthase in a Fungal Pathogen Causes a Metabolic Imbalance That Impacts Cell Energetics, Growth, and Virulence. PMID:33051366
Ecophysiological Study of Paraburkholderia sp. Strain 1N under Soil Solution Conditions: Dynamic Substrate Preferences and Characterization of Carbon Use Efficiency. PMID:33008817
Evaluation of Sample Preparation Methods for Inter-Laboratory Metabolomics Investigation of Streptomyces lividans TK24. PMID:32972026
Glucagon acutely regulates hepatic amino acid catabolism and the effect may be disturbed by steatosis. PMID:32937194
Exhaled volatile organic compounds analysis in clinical pediatrics: a systematic review. PMID:32919397
Differential Profiles of Gut Microbiota and Metabolites Associated with Host Shift of Plutella xylostella. PMID:32872681
Comparative Lipidomics of Different Yeast Species Associated to Drosophila suzukii. PMID:32872268
Microbial natural product databases: moving forward in the multi-omics era. PMID:32856641
Phenolic Metabolites from Barley in Contribution to Phenome in soil Moisture Deficit. PMID:32825802
The genetic origin of evolidine, the first cyclopeptide discovered in plants, and related orbitides. PMID:32817170
ReDU: a framework to find and reanalyze public mass spectrometry data. PMID:32807955
Integrative Modeling of Quantitative Plasma Lipoprotein, Metabolic, and Amino Acid Data Reveals a Multiorgan Pathological Signature of SARS-CoV-2 Infection. PMID:32806897
ABHD11 maintains 2-oxoglutarate metabolism by preserving functional lipoylation of the 2-oxoglutarate dehydrogenase complex. PMID:32792488
Sirt2 Inhibition Enhances Metabolic Fitness and Effector Functions of Tumor-Reactive T Cells. PMID:32768387
Ex Vivo Equine Cartilage Explant Osteoarthritis Model: A Metabolomics and Proteomics Study. PMID:32701294
Untargeted LC-MS Metabolomics Differentiates Between Virulent and Avirulent Clinical Strains of Pseudomonas aeruginosa. PMID:32668735
Metabolic Signatures of 10 Processed and Non-processed Meat Products after In Vitro Digestion. PMID:32635215
Metabolomics and Multi-Omics Integration: A Survey of Computational Methods and Resources. PMID:32429287
Assessing Urinary Metabolomics in Giant Pandas Using Chromatography/Mass Spectrometry: Pregnancy-Related Changes in the Metabolome. PMID:32373070
On the Use of Correlation and MI as a Measure of Metabolite-Metabolite Association for Network Differential Connectivity Analysis. PMID:32344593
NOREVA: enhanced normalization and evaluation of time-course and multi-class metabolomic data. PMID:32324219
Metabolomics Profiles of Smokers from Two Ethnic Groups with Differing Lung Cancer Risk. PMID:32293874
Nematode-Trapping Fungi Produce Diverse Metabolites during Predator-Prey Interaction. PMID:32245081
Optimization of Synovial Fluid Collection and Processing for NMR Metabolomics and LC-MS/MS Proteomics. PMID:32227958
The 27th annual Nucleic Acids Research database issue and molecular biology database collection. PMID:31906604 -
MetaboLights: An Open-Access Database Repository for Metabolomics Data
PubMed citations: 49.
49 articles citing: MetaboLights: An Open-Access Database Repository for Metabolomics Data
DES-Amyloidoses "Amyloidoses through the looking-glass": A knowledgebase developed for exploring and linking information related to human amyloid-related diseases. PMID:35877764
Integration of Transcriptomics Data and Metabolomic Data Using Biomedical Literature Mining and Pathway Analysis. PMID:35713871
Integrative OMICS Data-Driven Procedure Using a Derivatized Meta-Analysis Approach. PMID:35186042
Molecular Probes, Chemosensors, and Nanosensors for Optical Detection of Biorelevant Molecules and Ions in Aqueous Media and Biofluids. PMID:34995461
Native mass spectrometry-based metabolomics identifies metal-binding compounds. PMID:34795435
Toxicometabolomics: Small Molecules to Answer Big Toxicological Questions. PMID:34677407
Data Management and Modeling in Plant Biology. PMID:34539712
Serine Metabolism Tunes Immune Responses To Promote Oreochromis niloticus Survival upon Edwardsiella tarda Infection. PMID:34427522
Metabolomics-Guided Elucidation of Plant Abiotic Stress Responses in the 4IR Era: An Overview. PMID:34357339
Bioactivity descriptors for uncharacterized chemical compounds. PMID:34168145
Spatial Metabolomics and Imaging Mass Spectrometry in the Age of Artificial Intelligence. PMID:34056560
Recent Advanced Technologies for the Characterization of Xenobiotic-Degrading Microorganisms and Microbial Communities. PMID:33644024
Comprehensive Meta-Analysis of COVID-19 Global Metabolomics Datasets. PMID:33435351
Volumetric Absorptive Microsampling of Blood for Untargeted Lipidomics. PMID:33430231
Systematic Review of Multi-Omics Approaches to Investigate Toxicological Effects in Macrophages. PMID:33317022
Differential Network Analysis Reveals Molecular Determinants Associated with Blood Pressure and Heart Rate in Healthy Subjects. PMID:33274633
Food Phenotyping: Recording and Processing of Non-Targeted Liquid Chromatography Mass Spectrometry Data for Verifying Food Authenticity. PMID:32878155
Proteomics and Metabolomics for Cystic Fibrosis Research. PMID:32751630
Distinctive lipid signatures of bronchial epithelial cells associated with cystic fibrosis drugs, including Trikafta. PMID:32673287
AutoTuner: High Fidelity and Robust Parameter Selection for Metabolomics Data Processing. PMID:32212641
Metabolomic and Lipidomic Signatures of Metabolic Syndrome and its Physiological Components in Adults: A Systematic Review. PMID:31959772
Experiment design driven FAIRification of omics data matrices, an exemplar. PMID:31831744
Assessment of coverage for endogenous metabolites and exogenous chemical compounds using an untargeted metabolomics platform. PMID:31797630
An omics perspective on drug target discovery platforms. PMID:31774113
Stable Isotope-Assisted Plant Metabolomics: Combination of Global and Tracer-Based Labeling for Enhanced Untargeted Profiling and Compound Annotation. PMID:31708958
Enzyme annotation in UniProtKB using Rhea. PMID:31688925
InterSpin: Integrated Supportive Webtools for Low- and High-Field NMR Analyses Toward Molecular Complexity. PMID:31459550
Circulating metabolites in progression to islet autoimmunity and type 1 diabetes. PMID:31444528
Perspectives on Data Analysis in Metabolomics: Points of Agreement and Disagreement from the 2018 ASMS Fall Workshop. PMID:31440979
In Silico Toxicology Data Resources to Support Read-Across and (Q)SAR. PMID:31244651
The Design of FluxML: A Universal Modeling Language for 13C Metabolic Flux Analysis. PMID:31178829
De novo structure determination of 3-((3-aminopropyl)amino)-4-hydroxybenzoic acid, a novel and abundant metabolite in Acinetobacter baylyi ADP1. PMID:30874951
Assessing the Effectiveness of Direct Data Merging Strategy in Long-Term and Large-Scale Pharmacometabonomics. PMID:30842738
A Systems Analysis With "Simplified Source-Sink Model" Reveals Metabolic Reprogramming in a Pair of Source-to-Sink Organs During Early Fruit Development in Tomato by LED Light Treatments. PMID:30364178
ConfeitoGUI: A toolkit for size-sensitive community detection from a correlation network. PMID:30352084
Updates in Rhea: SPARQLing biochemical reaction data. PMID:30272209
Inferring Metabolic Mechanisms of Interaction within a Defined Gut Microbiota. PMID:30195437
DES-Mutation: System for Exploring Links of Mutations and Diseases. PMID:30190574
Balancing sufficiency and impact in reporting standards for mass spectrometry imaging experiments. PMID:30124809
Dynamics of Plasma Lipidome in Progression to Islet Autoimmunity and Type 1 Diabetes - Type 1 Diabetes Prediction and Prevention Study (DIPP). PMID:30006587
The Cellosaurus, a Cell-Line Knowledge Resource. PMID:29805321
Ash leaf metabolomes reveal differences between trees tolerant and susceptible to ash dieback disease. PMID:29257137
Panomics for Precision Medicine. PMID:29217119
MetExploreViz: web component for interactive metabolic network visualization. PMID:28968733
DES-ncRNA: A knowledgebase for exploring information about human micro and long noncoding RNAs based on literature-mining. PMID:28387604
Predatory Publishing Is a Threat to Non-Mainstream Science. PMID:28378542
Mixing omics: combining genetics and metabolomics to study rheumatic diseases. PMID:28148918
Current and Future Perspectives on the Structural Identification of Small Molecules in Biological Systems. PMID:27983674
Increasing rigor in NMR-based metabolomics through validated and open source tools. PMID:27643760 -
Automated assembly of species metabolomes through data submission into a public repository
PubMed citations: 4.
4 articles citing: Automated assembly of species metabolomes through data submission into a public repository
Modeling Meets Metabolomics-The WormJam Consensus Model as Basis for Metabolic Studies in the Model Organism Caenorhabditis elegans. PMID:30488036
Are microbiome studies ready for hypothesis-driven research? PMID:30059804
ESI-LC-MS based-metabolomics data of mangosteen (Garcinia mangostana Linn.) fruit pericarp, aril and seed at different ripening stages. PMID:29876463
Caveat Usor: Assessing Differences between Major Chemistry Databases. PMID:29451740 - http://dx.doi.org/10.1093/database/bat029
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More detailed information about this field from each metasource.
assay
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
biocuration
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
biological sample
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
biological sample annotation
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
chemical formula
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
chemical structure
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
computational predictions
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
lipid
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
mass spectrometry spectra
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metabolite
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
nuclear magnetic resonance (nmr) spectroscopy
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
protocol
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
publication
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
validation
metasource: Fairsharing.org
version: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metabolic pathways
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
cosmos
metasource: re3data.org
version: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
metabolic
metasource: re3data.org
version: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
metabolic pathway
metasource: re3data.org
version: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
metabolism
metasource: re3data.org
version: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
metabolite database
metasource: re3data.org
version: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
metabolites
metasource: re3data.org
version: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
metabolomics
metasource: re3data.org
version: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:12.196036
metabolomics experiment
metasource: re3data.org
version: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
metabolomics study
metasource: re3data.org
version: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
metabonomics
metasource: re3data.org
version: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
assay
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
biocuration
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
biological sample
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
biological sample annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
chemical formula
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
chemical structure
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
computational predictions
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
lipid
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
mass spectrometry spectra
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metabolite
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
nuclear magnetic resonance (nmr) spectroscopy
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
protocol
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
publication
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
validation
metasource: Fairsharing.orgversion: FAIRsharing.org: MTBLS; MetaboLights; DOI: https://doi.org/10.25504/FAIRsharing.kkdpxe; Last edited: Feb. 4, 2021, 2:47 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metabolic pathways
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
cosmos
metasource: re3data.orgversion: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
metabolic
metasource: re3data.orgversion: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
metabolic pathway
metasource: re3data.orgversion: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
metabolism
metasource: re3data.orgversion: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
metabolite database
metasource: re3data.orgversion: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
metabolites
metasource: re3data.orgversion: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
metabolomics
metasource: re3data.orgversion: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:12.196036
metabolomics experiment
metasource: re3data.orgversion: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
metabolomics study
metasource: re3data.orgversion: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
metabonomics
metasource: re3data.orgversion: re3data.org: MetaboLights; editing status 2020-01-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31P7N last accessed: 2022-11-04
assay biocuration biological sample biological sample annotation chemical formula chemical structure computational predictions lipid mass spectrometry spectra metabolite nuclear magnetic resonance (nmr) spectroscopy protocol publication validation metabolic and signaling pathways metabolic and signaling pathways cosmos metabolic metabolic pathway metabolism metabolite database metabolites metabolomics metabolomics experiment metabolomics study metabonomics
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