Oryza Tag Line
Names
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Oryza Tag Line
metasource: Fairsharing.org
version: FAIRsharing.org: OTL; Oryza Tag Line; DOI: https://doi.org/10.25504/FAIRsharing.61c2x6; Last edited: April 26, 2021, 8:45 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
OTL
metasource: Fairsharing.org
version: FAIRsharing.org: OTL; Oryza Tag Line; DOI: https://doi.org/10.25504/FAIRsharing.61c2x6; Last edited: April 26, 2021, 8:45 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Names
More detailed information about this field from each metasource.
Oryza Tag Line
metasource: Fairsharing.orgversion: FAIRsharing.org: OTL; Oryza Tag Line; DOI: https://doi.org/10.25504/FAIRsharing.61c2x6; Last edited: April 26, 2021, 8:45 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
OTL
metasource: Fairsharing.orgversion: FAIRsharing.org: OTL; Oryza Tag Line; DOI: https://doi.org/10.25504/FAIRsharing.61c2x6; Last edited: April 26, 2021, 8:45 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Names
More detailed information about this field from each metasource.
Oryza Tag Line
metasource: Fairsharing.orgversion: FAIRsharing.org: OTL; Oryza Tag Line; DOI: https://doi.org/10.25504/FAIRsharing.61c2x6; Last edited: April 26, 2021, 8:45 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
OTL
metasource: Fairsharing.orgversion: FAIRsharing.org: OTL; Oryza Tag Line; DOI: https://doi.org/10.25504/FAIRsharing.61c2x6; Last edited: April 26, 2021, 8:45 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
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Oryza Tag Line consists in a searchable database developed under the Oracle management system integrating phenotypic data resulting from the evaluation of the Genoplante rice insertion line library.
Description
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Oryza Tag Line consists in a searchable database developed under the Oracle management system integrating phenotypic data resulting from the evaluation of the Genoplante rice insertion line library.
metasource: Fairsharing.orgversion: FAIRsharing.org: OTL; Oryza Tag Line; DOI: https://doi.org/10.25504/FAIRsharing.61c2x6; Last edited: April 26, 2021, 8:45 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
To organize data resulting from the phenotypic characterization of a library of T-DNA insertion lines of rice (Oryza sativa L cv. Nipponbare), we developed the Oryza Tag Line database (http://genoplante-info.infobiogen.fr/OryzaTagLine/), a project supported by the French genomic initiative GÉnoplante. Today, this database describes 5,000 insertion lines. In the long term, the database will contain information about 46,000 insertion lines already produced. Generic features such as production records and seed stocks, as well as textual and pictorial information on GUS or GFP assays in specific organs or tissues, or morphophysiological alterations observed during field evaluation of the insertion lines are displayed. Forward genetic search is possible through a web interface where users can submit queries based on phenotypic alterations, reporter gene expression or keywords. We also propose to combine different types of queries in an advanced search page.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://oryzatagline.cirad.fr/Webpage
More detailed information about this field from each metasource.
http://oryzatagline.cirad.fr/
metasource: Fairsharing.orgversion: FAIRsharing.org: OTL; Oryza Tag Line; DOI: https://doi.org/10.25504/FAIRsharing.61c2x6; Last edited: April 26, 2021, 8:45 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://urgi.versailles.inra.fr/OryzaTagLine/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
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Oryza Tag Line, a phenotypic mutant database for the Genoplante rice insertion line library
PMID: 17947330
metasource: Fairsharing.org
version: FAIRsharing.org: OTL; Oryza Tag Line; DOI: https://doi.org/10.25504/FAIRsharing.61c2x6; Last edited: April 26, 2021, 8:45 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications
More detailed information about this field from each metasource.
Oryza Tag Line, a phenotypic mutant database for the Genoplante rice insertion line library
PMID: 17947330
metasource: Fairsharing.org
version: FAIRsharing.org: OTL; Oryza Tag Line; DOI: https://doi.org/10.25504/FAIRsharing.61c2x6; Last edited: April 26, 2021, 8:45 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
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Oryza Tag Line, a phenotypic mutant database for the Genoplante rice insertion line library
PubMed citations: 19.
19 articles citing: Oryza Tag Line, a phenotypic mutant database for the Genoplante rice insertion line library
Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy. PMID:30500839
A protocol combining multiphoton microscopy and propidium iodide for deep 3D root meristem imaging in rice: application for the screening and identification of tissue-specific enhancer trap lines. PMID:30386414
Turning rice meiosis into mitosis. PMID:27767093
Ascribing Functions to Genes: Journey Towards Genetic Improvement of Rice Via Functional Genomics. PMID:27252584
Integration of decoy domains derived from protein targets of pathogen effectors into plant immune receptors is widespread. PMID:26848538
Several wall-associated kinases participate positively and negatively in basal defense against rice blast fungus. PMID:26772971
High light-dependent phosphorylation of photosystem II inner antenna CP29 in monocots is STN7 independent and enhances nonphotochemical quenching. PMID:25501945
Diversity and genetics of nitrogen-induced susceptibility to the blast fungus in rice and wheat. PMID:24280346
Next-generation phenotyping: requirements and strategies for enhancing our understanding of genotype-phenotype relationships and its relevance to crop improvement. PMID:23471459
OsWRKY22, a monocot WRKY gene, plays a role in the resistance response to blast. PMID:22443363
Synergistic use of plant-prokaryote comparative genomics for functional annotations. PMID:21810204
Building a mutant resource for the study of disease resistance in rice reveals the pivotal role of several genes involved in defence. PMID:21726398
High-throughput phenotyping of multicellular organisms: finding the link between genotype and phenotype. PMID:21457493
Phenotypic and genomic analyses of a fast neutron mutant population resource in soybean. PMID:21321255
Fine mapping QTL for drought resistance traits in rice (Oryza sativa L.) using bulk segregant analysis. PMID:21298364
RiceFOX: a database of Arabidopsis mutant lines overexpressing rice full-length cDNA that contains a wide range of trait information to facilitate analysis of gene function. PMID:21186176
Natural and artificial mutants as valuable resources for functional genomics and molecular breeding. PMID:20440406
Phenome analysis in plant species using loss-of-function and gain-of-function mutants. PMID:19502383
OryGenesDB 2008 update: database interoperability for functional genomics of rice. PMID:19036791
Tags:
Tags
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complementary dna
metasource: Fairsharing.org
version: FAIRsharing.org: OTL; Oryza Tag Line; DOI: https://doi.org/10.25504/FAIRsharing.61c2x6; Last edited: April 26, 2021, 8:45 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
dna sequence data
metasource: Fairsharing.org
version: FAIRsharing.org: OTL; Oryza Tag Line; DOI: https://doi.org/10.25504/FAIRsharing.61c2x6; Last edited: April 26, 2021, 8:45 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: OTL; Oryza Tag Line; DOI: https://doi.org/10.25504/FAIRsharing.61c2x6; Last edited: April 26, 2021, 8:45 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: OTL; Oryza Tag Line; DOI: https://doi.org/10.25504/FAIRsharing.61c2x6; Last edited: April 26, 2021, 8:45 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
messenger rna
metasource: Fairsharing.org
version: FAIRsharing.org: OTL; Oryza Tag Line; DOI: https://doi.org/10.25504/FAIRsharing.61c2x6; Last edited: April 26, 2021, 8:45 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: OTL; Oryza Tag Line; DOI: https://doi.org/10.25504/FAIRsharing.61c2x6; Last edited: April 26, 2021, 8:45 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
rice
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
complementary dna
metasource: Fairsharing.orgversion: FAIRsharing.org: OTL; Oryza Tag Line; DOI: https://doi.org/10.25504/FAIRsharing.61c2x6; Last edited: April 26, 2021, 8:45 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
dna sequence data
metasource: Fairsharing.orgversion: FAIRsharing.org: OTL; Oryza Tag Line; DOI: https://doi.org/10.25504/FAIRsharing.61c2x6; Last edited: April 26, 2021, 8:45 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: OTL; Oryza Tag Line; DOI: https://doi.org/10.25504/FAIRsharing.61c2x6; Last edited: April 26, 2021, 8:45 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: OTL; Oryza Tag Line; DOI: https://doi.org/10.25504/FAIRsharing.61c2x6; Last edited: April 26, 2021, 8:45 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
messenger rna
metasource: Fairsharing.orgversion: FAIRsharing.org: OTL; Oryza Tag Line; DOI: https://doi.org/10.25504/FAIRsharing.61c2x6; Last edited: April 26, 2021, 8:45 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: OTL; Oryza Tag Line; DOI: https://doi.org/10.25504/FAIRsharing.61c2x6; Last edited: April 26, 2021, 8:45 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
rice
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
complementary dna dna sequences dna gene expression messenger rna phenotype plant rice
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