The Economic, Medical and Psychosocial Consequences of Whole Genome Sequencing for the Genetic Diagnosis of Patients With Intellectual Disability: The DEFIDIAG Study Protocol.
PMID:35444683
Genome-Wide Analysis Identified a Set of Conserved lncRNAs Associated with Domestication-Related Traits in Rice.
PMID:33947059
Recalibration of mapping quality scores in Illumina short-read alignments improves SNP detection results in low-coverage sequencing data.
PMID:33354434
Conserved Imprinted Genes between Intra-Subspecies and Inter-Subspecies Are Involved in Energy Metabolism and Seed Development in Rice.
PMID:33348666
RiceRelativesGD: a genomic database of rice relatives for rice research.
PMID:31560050
Accelerating public sector rice breeding with high-density KASP markers derived from whole genome sequencing of indica rice.
PMID:29563850
Comparative transcriptome analysis reveals molecular response to salinity stress of salt-tolerant and sensitive genotypes of indica rice at seedling stage.
PMID:29391416
Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage.
PMID:26369665
Profiling the expression domains of a rice-specific microRNA under stress.
PMID:26029232
RiceNet v2: an improved network prioritization server for rice genes.
PMID:25813048
Genome and metagenome sequencing: Using the human methyl-binding domain to partition genomic DNA derived from plant tissues.
PMID:25383266
Genetic analysis of ion-beam induced extremely late heading mutants in rice.
PMID:25320557
Gramene 2013: comparative plant genomics resources.
PMID:24217918
RiceWiki: a wiki-based database for community curation of rice genes.
PMID:24136999
STIFDB2: an updated version of plant stress-responsive transcription factor database with additional stress signals, stress-responsive transcription factor binding sites and stress-responsive genes in Arabidopsis and rice.
PMID:23314754
OrysPSSP: a comparative platform for small secreted proteins from rice and other plants.
PMID:23203890
The Rice Genome Knowledgebase (RGKbase): an annotation database for rice comparative genomics and evolutionary biology.
PMID:23193278
Identification of genome-wide variations among three elite restorer lines for hybrid-rice.
PMID:22383984
Analysis of trehalose-6-phosphate synthase (TPS) gene family suggests the formation of TPS complexes in rice.
PMID:21598083
Rice-Map: a new-generation rice genome browser.
PMID:21450055
Analyses of phylogeny, evolution, conserved sequences and genome-wide expression of the ICK/KRP family of plant CDK inhibitors.
PMID:21385782
Plant noncoding RNA gene discovery by "single-genome comparative genomics".
PMID:21220549
Identification and analysis of seven H₂O₂-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica).
PMID:21113019
Gramene database in 2010: updates and extensions.
PMID:21076153
RNA G-Quadruplexes in the model plant species Arabidopsis thaliana: prevalence and possible functional roles.
PMID:20860998
PlnTFDB: updated content and new features of the plant transcription factor database.
PMID:19858103
MyBASE: a database for genome polymorphism and gene function studies of Mycobacterium.
PMID:19228437
Genomic and genetic database resources for the grasses.
PMID:19126704
Bioinformatics in China: a personal perspective.
PMID:18437216
Analysis of 142 genes resolves the rapid diversification of the rice genus.
PMID:18315873
The Rice Annotation Project Database (RAP-DB): 2008 update.
PMID:18089549
Gene organization in rice revealed by full-length cDNA mapping and gene expression analysis through microarray.
PMID:18043742
Gramene: a growing plant comparative genomics resource.
PMID:17984077
A genome-wide gain-of function analysis of rice genes using the FOX-hunting system.
PMID:17929174
MethyCancer: the database of human DNA methylation and cancer.
PMID:17890243
A BAC end view of the Musa acuminata genome.
PMID:17562019
A genome-wide microsatellite polymorphism database for the indica and japonica rice.
PMID:17452422
Rice functional genomics research in China.
PMID:17347106
A comprehensive crop genome research project: the Superhybrid Rice Genome Project in China.
PMID:17331896
Improvement of whole-genome annotation of cereals through comparative analyses.
PMID:17284677
Global genome expression analysis of rice in response to drought and high-salinity stresses in shoot, flag leaf, and panicle.
PMID:17225073
The TIGR Rice Genome Annotation Resource: improvements and new features.
PMID:17145706
PigGIS: Pig Genomic Informatics System.
PMID:17090590
Influenza Virus Database (IVDB): an integrated information resource and analysis platform for influenza virus research.
PMID:17065465
Neighboring-nucleotide effects on the mutation patterns of the rice genome.
PMID:16487081
Comprehensive comparative analysis of kinesins in photosynthetic eukaryotes.
PMID:16448571
Recombination, rearrangement, reshuffling, and divergence in a centromeric region of rice.
PMID:16381819
Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis.
PMID:16284311
A pilot study of transcription unit analysis in rice using oligonucleotide tiling-path microarray.
PMID:16217608
A microarray analysis of the rice transcriptome and its comparison to Arabidopsis.
PMID:16140994
Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architecture.
PMID:15960804
DNA rearrangement in orthologous orp regions of the maize, rice and sorghum genomes.
PMID:15834137
The Genomes of Oryza sativa: a history of duplications.
PMID:15685292
Rice Annotation Database (RAD): a contig-oriented database for map-based rice genomics.
PMID:15608281
ChickVD: a sequence variation database for the chicken genome.
PMID:15608233
SilkDB: a knowledgebase for silkworm biology and genomics.
PMID:15608225
An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments.
PMID:15342564